+F Repair protein KO
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DNA Repair and Recombination Proteins - Helicobacter pylori J99
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D jhp_0618 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E jhp_1266 ung; URACIL-DNA GLYCOSYLASE K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E jhp_0130 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E jhp_0532 nth; ENDONUCLEASE III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D jhp_0799 dut; DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D jhp_0618 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E jhp_1266 ung; URACIL-DNA GLYCOSYLASE K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E jhp_0595 putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E jhp_0130 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E jhp_0532 nth; ENDONUCLEASE III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E jhp_1415 exoA; EXODEOXYRIBONUCLEASE K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E jhp_0322 recJ; putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E jhp_0644 uvrA; EXCINUCLEASE ABC SUBUNIT A K03701 uvrA; excinuclease ABC subunit A
E jhp_1041 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B
E jhp_0760 uvrC; EXCINUCLEASE ABC SUBUNIT C K03703 uvrC; excinuclease ABC subunit C
E jhp_1371 rep; putative ATP-DEPENDENT DNA HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E jhp_0847 putative ATP-DEPENDENT HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F jhp_1121 rpoB; DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
F jhp_1213 rpoA; RNA POLYMERASE ALPHA SUBUNIT K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F jhp_0713 putative K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F jhp_1458 mfd; TRANSCRIPTION-REPAIR COUPLING FACTOR K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E jhp_0565 mutS; DNA MISMATCH REPAIR PROTEIN K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E jhp_0243 xseA; EXODEOXYRIBONUCLEASE LARGE SUBUNIT K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E jhp_1375 putative K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E jhp_1353 dnaE; DNA POLYMERASE III, ALPHA CHAIN K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E jhp_0452 dnaN; DNA POLYMERASE III, BETA CHAIN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E jhp_1168 putative K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E jhp_1152 holB; putative DNA poymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E jhp_1438 DNA POLYMERASE III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E jhp_0655 dnaX; DNA POLYMERASE III SUBUNITS GAMMA AND TAU K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E jhp_1371 rep; putative ATP-DEPENDENT DNA HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E jhp_0847 putative ATP-DEPENDENT HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E jhp_1166 ssb; SINGLE-STRAND BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein
E jhp_0433 putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E jhp_0141 recA; RECA PROTEIN K03553 recA; recombination protein RecA
E jhp_0815 ruvA; HOLLIDAY JUNCTION DNA HELICASE K03550 ruvA; holliday junction DNA helicase RuvA
E jhp_0366 ruvB; HOLLIDAY JUNCTION DNA HELICASE RUVB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E jhp_0811 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E jhp_0994 priA; PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E jhp_0141 recA; RECA PROTEIN K03553 recA; recombination protein RecA
E jhp_0209 radA; DNA REPAIR PROTEIN K04485 radA; DNA repair protein RadA/Sms
E jhp_1412 recG; ATP-DEPENDENT DNA HELICASE K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E jhp_0322 recJ; putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E jhp_0859 recR; RECOMBINATION PROTEIN K06187 recR; recombination protein RecR
E jhp_1434 recN; DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) K03631 recN; DNA repair protein RecN (Recombination protein N)
E jhp_0815 ruvA; HOLLIDAY JUNCTION DNA HELICASE K03550 ruvA; holliday junction DNA helicase RuvA
E jhp_0366 ruvB; HOLLIDAY JUNCTION DNA HELICASE RUVB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E jhp_0811 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F jhp_0641 gyrA; DNA GYRASE SUBUNIT A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F jhp_0453 gyrB; DNA GYRASE SUBUNIT B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F jhp_0108 topA_1; DNA TOPOISOMERASE I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F jhp_0919 topA_2; topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F jhp_0931 topA_3; topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F jhp_0774 DNA-BINDING PROTEIN HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F jhp_0322 recJ; putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F jhp_0859 recR; RECOMBINATION PROTEIN K06187 recR; recombination protein RecR
F jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F jhp_0644 uvrA; EXCINUCLEASE ABC SUBUNIT A K03701 uvrA; excinuclease ABC subunit A
F jhp_1041 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D jhp_0141 recA; RECA PROTEIN K03553 recA; recombination protein RecA
D jhp_1434 recN; DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) K03631 recN; DNA repair protein RecN (Recombination protein N)
D jhp_1166 ssb; SINGLE-STRAND BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D jhp_0799 dut; DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D jhp_0621 nrdA; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D jhp_1016 nrdB; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024