+F Repair protein KO #

  DNA Repair and Recombination Proteins - Helicobacter pylori J99

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D jhp_0618 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E jhp_1266 ung; URACIL-DNA GLYCOSYLASE K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E jhp_0130 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E jhp_0532 nth; ENDONUCLEASE III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D jhp_0799 dut; DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D jhp_0618 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E jhp_1266 ung; URACIL-DNA GLYCOSYLASE K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E jhp_0595 putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E jhp_0130 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E jhp_0532 nth; ENDONUCLEASE III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E jhp_1415 exoA; EXODEOXYRIBONUCLEASE K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E jhp_0322 recJ; putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E jhp_0644 uvrA; EXCINUCLEASE ABC SUBUNIT A K03701 uvrA; excinuclease ABC subunit A E jhp_1041 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B E jhp_0760 uvrC; EXCINUCLEASE ABC SUBUNIT C K03703 uvrC; excinuclease ABC subunit C E jhp_1371 rep; putative ATP-DEPENDENT DNA HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E jhp_0847 putative ATP-DEPENDENT HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F jhp_1121 rpoB; DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6] F jhp_1213 rpoA; RNA POLYMERASE ALPHA SUBUNIT K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F jhp_0713 putative K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F jhp_1458 mfd; TRANSCRIPTION-REPAIR COUPLING FACTOR K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E jhp_0565 mutS; DNA MISMATCH REPAIR PROTEIN K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E jhp_0243 xseA; EXODEOXYRIBONUCLEASE LARGE SUBUNIT K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E jhp_1375 putative K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E jhp_1353 dnaE; DNA POLYMERASE III, ALPHA CHAIN K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E jhp_0452 dnaN; DNA POLYMERASE III, BETA CHAIN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E jhp_1168 putative K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E jhp_1152 holB; putative DNA poymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E jhp_1438 DNA POLYMERASE III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E jhp_0655 dnaX; DNA POLYMERASE III SUBUNITS GAMMA AND TAU K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E jhp_1371 rep; putative ATP-DEPENDENT DNA HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E jhp_0847 putative ATP-DEPENDENT HELICASE K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E jhp_1166 ssb; SINGLE-STRAND BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein E jhp_0433 putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E jhp_0141 recA; RECA PROTEIN K03553 recA; recombination protein RecA E jhp_0815 ruvA; HOLLIDAY JUNCTION DNA HELICASE K03550 ruvA; holliday junction DNA helicase RuvA E jhp_0366 ruvB; HOLLIDAY JUNCTION DNA HELICASE RUVB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E jhp_0811 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E jhp_0994 priA; PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E jhp_0141 recA; RECA PROTEIN K03553 recA; recombination protein RecA E jhp_0209 radA; DNA REPAIR PROTEIN K04485 radA; DNA repair protein RadA/Sms E jhp_1412 recG; ATP-DEPENDENT DNA HELICASE K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E jhp_0322 recJ; putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E jhp_0859 recR; RECOMBINATION PROTEIN K06187 recR; recombination protein RecR E jhp_1434 recN; DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) K03631 recN; DNA repair protein RecN (Recombination protein N) E jhp_0815 ruvA; HOLLIDAY JUNCTION DNA HELICASE K03550 ruvA; holliday junction DNA helicase RuvA E jhp_0366 ruvB; HOLLIDAY JUNCTION DNA HELICASE RUVB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E jhp_0811 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F jhp_0641 gyrA; DNA GYRASE SUBUNIT A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F jhp_0453 gyrB; DNA GYRASE SUBUNIT B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F jhp_0108 topA_1; DNA TOPOISOMERASE I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F jhp_0919 topA_2; topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F jhp_0931 topA_3; topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F jhp_0774 DNA-BINDING PROTEIN HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F jhp_0322 recJ; putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F jhp_0859 recR; RECOMBINATION PROTEIN K06187 recR; recombination protein RecR F jhp_0558 lig; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F jhp_0644 uvrA; EXCINUCLEASE ABC SUBUNIT A K03701 uvrA; excinuclease ABC subunit A F jhp_1041 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D jhp_0141 recA; RECA PROTEIN K03553 recA; recombination protein RecA D jhp_1434 recN; DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) K03631 recN; DNA repair protein RecN (Recombination protein N) D jhp_1166 ssb; SINGLE-STRAND BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D jhp_0799 dut; DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D jhp_0621 nrdA; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D jhp_1016 nrdB; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024