+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Haliotis rufescens (red abalone)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 124135334 mRNA cap guanine-N7 methyltransferase-like K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 124148416 mRNA-capping enzyme-like K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 124135739 cyclin-dependent kinase 7-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 124115407 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1-like K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 124141798 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2-like K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
D Cap binding complex
E 124134203 nuclear cap-binding protein subunit 1-like K12882 NCBP1; nuclear cap-binding protein subunit 1
E 124116713 nuclear cap-binding protein subunit 2-like K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 124138969 cleavage and polyadenylation specificity factor subunit 5-like isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 124120731 cleavage and polyadenylation specificity factor subunit 6-like isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 124114702 polyribonucleotide 5'-hydroxyl-kinase Clp1-like isoform X1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 124132702 uncharacterized protein LOC124132702 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 124152235 cleavage and polyadenylation specificity factor subunit 1-like isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 124144542 cleavage and polyadenylation specificity factor subunit 2-like K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 124135376 cleavage and polyadenylation specificity factor subunit 3-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 124138106 cleavage and polyadenylation specificity factor subunit 4-like isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 125374031 pre-mRNA 3'-end-processing factor FIP1-like K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 124145510 RNA-binding protein 33-like isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 124137741 pre-mRNA 3' end processing protein WDR33-like K15542 PFS2; polyadenylation factor subunit 2
E 124116077 WD repeat-containing protein 82-like K14962 WDR82; COMPASS component SWD2
E 124132769 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 124135184 serine/threonine-protein phosphatase alpha-2 isoform K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 124146136 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 124137701 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 124116916 cleavage stimulation factor subunit 1-like K14406 CSTF1; cleavage stimulation factor subunit 1
E 124150668 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 124145256 cleavage stimulation factor subunit 3-like K14408 CSTF3; cleavage stimulation factor subunit 3
E 124140700 symplekin-like K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 124117225 small nuclear ribonucleoprotein-associated protein B'-like K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 124138686 small nuclear ribonucleoprotein Sm D3-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 124126679 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 124136168 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 124141249 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 124150883 U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 124144542 cleavage and polyadenylation specificity factor subunit 2-like K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 124135376 cleavage and polyadenylation specificity factor subunit 3-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 124150668 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 124140700 symplekin-like K06100 SYMPK; symplekin
E 124116876 uncharacterized protein LOC124116876 K18710 SLBP; histone RNA hairpin-binding protein
D DRB sensitivity inducing factor (DSIF) complex
E 124111348 transcription elongation factor SPT4-like K15171 SUPT4H1; transcription elongation factor SPT4
E 124138184 transcription elongation factor SPT5-like K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 124133956 N6-adenosine-methyltransferase subunit METTL3-like isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 124138884 N6-adenosine-methyltransferase non-catalytic subunit-like K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 124118390 N(6)-adenine-specific methyltransferase METTL4-like isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 124132071 RNA N6-adenosine-methyltransferase mettl16-like K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 124139024 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 124150190 protein virilizer homolog K22910 VIRMA; protein virilizer
E 124122591 RNA-binding protein spenito-like K13190 RBM15; RNA-binding protein 15
E 124141354 zinc finger CCCH domain-containing protein 13-like isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 124145901 E3 ubiquitin-protein ligase Hakai-like isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 124140962 poly(A) polymerase type 3-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 124131368 poly(A) RNA polymerase gld-2 homolog A-like K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 124125762 speckle targeted PIP5K1A-regulated poly(A) polymerase-like K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 124143118 BRCA1-associated RING domain protein 1-like K10683 BARD1; BRCA1-associated RING domain protein 1
E 124132756 RNA demethylase ALKBH5-like K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 124152482 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 124116679 TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 124147182 KIN17-like protein isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 124118035 DNA/RNA-binding protein KIN17-like K13102 KIN; DNA/RNA-binding protein KIN17
D 124138485 methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 124115301 terminal nucleotidyltransferase 5C-like K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 124134867 zinc finger CCCH domain-containing protein 14-like K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 124147389 serrate RNA effector molecule homolog A-like isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 124113369 RNA-binding protein 8A-like K12876 RBM8A; RNA-binding protein 8A
E 124138801 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 124151224 THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 124144772 spliceosome RNA helicase DDX39B isoform X1 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 124129237 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 124112106 coiled-coil domain-containing protein 174-like K25178 CCDC174; coiled-coil domain-containing protein 174
E 124149517 protein CASC3-like isoform X1 K14323 CASC3; protein CASC3
E 124126168 histone deacetylase complex subunit SAP18-like K14324 SAP18; histone deacetylase complex subunit SAP18
E 124132356 pinin-like K13114 PNN; pinin
E 124136952 apoptotic chromatin condensation inducer in the nucleus-like isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 124137112 serine/arginine repetitive matrix protein 1-like isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 124138786 THO complex subunit 1-like K12878 THOC1; THO complex subunit 1
E 124132653 THO complex subunit 2-like K12879 THOC2; THO complex subunit 2
E 124115918 THO complex subunit 3-like K12880 THOC3; THO complex subunit 3
E 124151224 THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 124135213 THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 124153032 THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 124146114 THO complex subunit 7 homolog isoform X1 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 124112667 PCI domain-containing protein 2-like K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 124127135 26S proteasome complex subunit SEM1-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 124133923 transcription and mRNA export factor ENY2-like K11368 ENY2; enhancer of yellow 2 transcription factor
E 124115641 caltractin K10840 CETN2; centrin-2
E 125379327 centrin-3 K16466 CETN3; centrin-3
E 124136041 germinal-center associated nuclear protein-like isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 124115607 nucleoprotein TPR-like isoform X1 K09291 TPR; nucleoprotein TPR
E 124114353 mRNA export factor-like K14298 RAE1; mRNA export factor
E 124134440 protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 124147358 nucleoporin Nup37-like K14302 NUP37; nuclear pore complex protein Nup37
E 124110839 nuclear pore complex protein Nup85-like K14304 NUP85; nuclear pore complex protein Nup85
E 124147343 nucleoporin Nup43-like K14305 NUP43; nuclear pore complex protein Nup43
E 124130057 nuclear pore complex protein Nup50-like isoform X1 K14295 NUP50; nuclear pore complex protein Nup50
E 124144178 nucleoporin p54-like isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 124111438 nuclear pore glycoprotein p62-like K14306 NUP62; nuclear pore complex protein Nup62
E 124120296 nucleoporin 88-like isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 124142537 nuclear pore complex protein Nup93-like K14309 NUP93; nuclear pore complex protein Nup93
E 124115638 nuclear pore complex protein Nup98-Nup96-like isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 124115908 nuclear pore complex protein Nup107-like isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 124124817 nuclear pore complex protein Nup133-like K14300 NUP133; nuclear pore complex protein Nup133
E 124121675 nucleoporin NUP188-like K14311 NUP188; nuclear pore complex protein Nup188
E 124149402 nuclear pore complex protein Nup153-like isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 124111761 nuclear pore complex protein Nup155-like isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 124146922 nuclear pore complex protein Nup160-like isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 124148520 nucleoporin NUP35-like isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 124137105 nuclear pore complex protein Nup205-like isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 124116845 nuclear pore membrane glycoprotein 210-like isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 124114175 nuclear pore complex protein Nup214-like isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 124137490 nucleoporin p58/p45-like isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 124139464 nucleoporin NUP42-like isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 124142208 nucleoporin NDC1-like K14315 NDC1; nucleoporin NDC1
E 124148291 nucleoporin SEH1-like K14299 SEH1; nucleoporin SEH1
E 124120606 ranBP2-like and GRIP domain-containing protein 4 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 124120609 RANBP2-like and GRIP domain-containing protein 8 isoform X5 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 124120610 E3 SUMO-protein ligase RanBP2-like isoform X2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 125379327 centrin-3 K16466 CETN3; centrin-3
E 124134915 mRNA export factor GLE1-like K18723 GLE1; nucleoporin GLE1
E 124111962 nuclear RNA export factor 1-like K14284 NXF; nuclear RNA export factor
D Ran-mediated transport factors
E 124140245 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 124131003 GTP-binding nuclear protein ran-1-like K07936 RAN; GTP-binding nuclear protein Ran
E 124114434 uncharacterized protein LOC124114434 isoform X1 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 124142763 ELAV-like protein 1-B K13088 ELAVL1; ELAV-like protein 1
E 124145537 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 124111986 ELAV-like protein 1 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 124147852 FAS-associated factor 2-like K18726 FAF2; FAS-associated factor 2
E 124113093 transitional endoplasmic reticulum ATPase isoform X1 K13525 VCP; transitional endoplasmic reticulum ATPase
E 124147867 protein N-lysine methyltransferase METTL21D-like K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 124146645 exportin-1-like isoform X1 K14290 XPO1; exportin-1
E 124147207 exportin-7-like isoform X1 K18460 XPO7; exportin-7
E 124149636 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
E 124113790 RNA-binding protein FUS-like isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 124118186 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 124110671 eukaryotic translation initiation factor 4E type 2-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 124152630 eukaryotic initiation factor 4A-I-like isoform X1 K03257 EIF4A; translation initiation factor 4A
E 124138503 eukaryotic translation initiation factor 4 gamma 3-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 124115062 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 124139116 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 124135802 eukaryotic translation initiation factor 4B-like isoform X2 K03258 EIF4B; translation initiation factor 4B
E 124140215 eukaryotic translation initiation factor 4H-like K24086 EIF4H; translation initiation factor 4H
E 124142310 eukaryotic translation initiation factor 4E-binding protein 1-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 124141661 eukaryotic translation initiation factor 4E transporter-like isoform X3 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 124122767 protein angel homolog 2-like K18729 ANGEL; protein angel
E 124111139 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 124127546 cytoplasmic FMR1-interacting protein-like isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 124139846 gem-associated protein 5-like K13133 GEMIN5; gem associated protein 5
E 124134968 cytoplasmic polyadenylation element-binding protein-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 124138114 cytoplasmic polyadenylation element-binding protein 2-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 124120554 ATP-dependent RNA helicase DDX3Y-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 124124640 GRB10-interacting GYF protein 2-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 125381056 GRB10-interacting GYF protein 2-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 124137727 GRB10-interacting GYF protein 2-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 124144402 GRB10-interacting GYF protein 2-like K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 124122603 uncharacterized protein LOC124122603 K13126 PABPC; polyadenylate-binding protein
E 124128332 uncharacterized protein LOC124128332 K13126 PABPC; polyadenylate-binding protein
E 125378125 polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 124114187 polyadenylate-binding protein-interacting protein 1-like isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 124145663 polyadenylate-binding protein-interacting protein 2-like isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 124142472 helicase SKI2W-like K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 124110518 deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 124133721 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence
E 124134941 density-regulated protein homolog K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 124135491 APOBEC1 complementation factor-like isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 124151147 partner of Y14 and mago-like K14294 WIBG; partner of Y14 and mago
E 124145083 DAZ-associated protein 1-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 124140201 RNA-binding protein Musashi homolog 2-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 124120496 uncharacterized protein LOC124120496 isoform X2 K14416 HBS1; elongation factor 1 alpha-like protein
E 124142088 protein pelota-like K06965 PELO; protein pelota
E 124135333 polyadenylate-binding protein 2-B-like K14396 PABPN1; polyadenylate-binding protein 2
E 124132285 ATP-dependent RNA helicase DDX19A-like K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 124114406 pre-mRNA-splicing factor SYF1-like K12867 SYF1; pre-mRNA-splicing factor SYF1
E 124131033 SAP domain-containing ribonucleoprotein-like K18732 SARNP; SAP domain-containing ribonucleoprotein
E 124146284 regulator of chromosome condensation-like K11493 RCC1; regulator of chromosome condensation
E 124131344 la-related protein 6-like K18733 LARP6; la-related protein 6
E 124145812 transcriptional activator protein Pur-alpha-like isoform X1 K21772 PURA; transcriptional activator protein Pur-alpha
E 124153103 uncharacterized protein LOC124153103 K22414 POLDIP3; polymerase delta-interacting protein 3
E 124123826 zinc finger CCCH domain-containing protein 11A-like K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 124151050 leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 124139375 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 124144563 eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like K03267 ERF3; peptide chain release factor subunit 3
E 124131366 regulator of nonsense transcripts 1-like K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 124140109 regulator of nonsense transcripts 2-like isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 124145967 regulator of nonsense transcripts 3B-like isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 124134283 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 124115505 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X3 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 124150924 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 124110383 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 124134875 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 124143984 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 124134886 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 124137375 serine/threonine-protein kinase SMG1-like isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 124146821 nonsense-mediated mRNA decay factor SMG5-like K11125 SMG5; protein SMG5
E 124120263 telomerase-binding protein EST1A-like K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 124113764 nonsense-mediated mRNA decay factor SMG7-like isoform X1 K14409 SMG7; protein SMG7
E 124139109 nonsense-mediated mRNA decay factor SMG8-like isoform X1 K18734 SMG8; protein SMG8
E 124116858 nonsense-mediated mRNA decay factor SMG9-like K18735 SMG9; protein SMG9
E 124124640 GRB10-interacting GYF protein 2-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 125381056 GRB10-interacting GYF protein 2-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 124137727 GRB10-interacting GYF protein 2-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 124144402 GRB10-interacting GYF protein 2-like K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 124121959 uncharacterized protein LOC124121959 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 124150233 probable ATP-dependent RNA helicase DHX34 isoform X1 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 124134324 GTP-binding protein 1-like K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 124136165 pumilio homolog 3-like K14844 PUF6; pumilio homology domain family member 6
E 124140784 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 124146551 protein bicaudal D-like isoform X1 K18739 BICD; protein bicaudal D
E 124144202 uncharacterized protein LOC124144202 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
E 124112559 piRNA biogenesis protein EXD1-like K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 124118791 actin-1-like K05692 ACTB_G1; actin beta/gamma 1
E 124121471 actin-2-like K05692 ACTB_G1; actin beta/gamma 1
E 124121473 actin-5-like K05692 ACTB_G1; actin beta/gamma 1
E 124144617 actin, adductor muscle K05692 ACTB_G1; actin beta/gamma 1
E 124146295 actin-2-like K05692 ACTB_G1; actin beta/gamma 1
E 124114128 actin, cytoplasmic-like K05692 ACTB_G1; actin beta/gamma 1
E 124114131 actin, cytoplasmic-like K05692 ACTB_G1; actin beta/gamma 1
E 124114132 actin, cytoplasmic-like K05692 ACTB_G1; actin beta/gamma 1
E 124114133 actin, cytoplasmic-like K05692 ACTB_G1; actin beta/gamma 1
E 124114135 actin, cytoplasmic-like K05692 ACTB_G1; actin beta/gamma 1
E 124114136 actin, cytoplasmic K05692 ACTB_G1; actin beta/gamma 1
E 124114327 actin-2-like K05692 ACTB_G1; actin beta/gamma 1
E 124114330 actin-like K05692 ACTB_G1; actin beta/gamma 1
E 124114333 actin-2-like K05692 ACTB_G1; actin beta/gamma 1
E 124114334 actin, cytoplasmic-like isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 124114337 actin-1-like K05692 ACTB_G1; actin beta/gamma 1
E 124126731 actin-2-like K05692 ACTB_G1; actin beta/gamma 1
E 124117334 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 124124652 uncharacterized protein LOC124124652 K18741 NANOS1; protein nanos 1
E 124137735 uncharacterized protein LOC124137735 K18741 NANOS1; protein nanos 1
E 124118027 uncharacterized protein LOC124118027 K09090 HESN; hairy and enhancer of split, invertebrate
D Trans-acting binding proteins
E 124139310 far upstream element-binding protein 1-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 124110954 elongation factor 1-alpha, oocyte form-like K03231 EEF1A; elongation factor 1-alpha
E 124110955 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 124110956 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 124124186 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 124131816 elongation factor 1-gamma-like isoform X1 K03233 EEF1G; elongation factor 1-gamma
E 124134067 HCLS1-associated protein X-1-like isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 124117435 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 124117467 double-stranded RNA-binding protein Staufen homolog isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 124118387 polypyrimidine tract-binding protein 1-like isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 124134968 cytoplasmic polyadenylation element-binding protein-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 124138114 cytoplasmic polyadenylation element-binding protein 2-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 124111139 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 124127546 cytoplasmic FMR1-interacting protein-like isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 124135962 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 124135481 caprin-1-like isoform X1 K18743 CAPRIN1; caprin-1
E 124116476 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 124152504 5'-3' exoribonuclease 1-like isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 124139494 protein argonaute-2-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 124118186 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 124110671 eukaryotic translation initiation factor 4E type 2-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 124131366 regulator of nonsense transcripts 1-like K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 124120554 ATP-dependent RNA helicase DDX3Y-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 124121803 ATP-dependent RNA helicase cgh-1-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 124134081 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 124113021 protein LSM14 homolog A-like isoform X1 K18749 LSM14; protein LSM14
E 124116476 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1
E 124112861 LIM domain-containing protein jub-like isoform X1 K16682 AJUBA; LIM domain-containing protein
E 124125726 putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 124133274 transportin-1-like isoform X1 K18752 TNPO1; transportin-1
E 124137375 serine/threonine-protein kinase SMG1-like isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 124146821 nonsense-mediated mRNA decay factor SMG5-like K11125 SMG5; protein SMG5
E 124120263 telomerase-binding protein EST1A-like K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 124113764 nonsense-mediated mRNA decay factor SMG7-like isoform X1 K14409 SMG7; protein SMG7
E 124152836 mRNA decay activator protein ZFP36L2-like K18753 ZFP36L; butyrate response factor
E 124116416 protein lin-28 homolog isoform X1 K18754 LIN28; protein lin-28
E 124141221 huntingtin-like isoform X1 K04533 HD; huntingtin
E 124129076 protein bicaudal C homolog 1-B-like isoform X1 K18756 BICC1; protein bicaudal C
E 124120538 cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 124120953 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
E 124147155 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 124145090 m7GpppN-mRNA hydrolase-like K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 124122166 mRNA-decapping enzyme 1B-like K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 124143404 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 124142483 U6 snRNA-associated Sm-like protein LSm2 isoform X1 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 124146140 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 124140706 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 124150337 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 124150083 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 124140782 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 124120659 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 124146625 kinesin light chain-like isoform X1 K10407 KLC; kinesin light chain
E 124140784 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 124142540 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124142541 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124142542 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124142543 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124151827 tubulin alpha-8 chain-like isoform X1 K07374 TUBA; tubulin alpha
E 124120684 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 124120685 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124120699 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124120717 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124120718 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124120719 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 124120736 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124120934 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124120936 tubulin alpha-3 chain-like isoform X1 K07374 TUBA; tubulin alpha
E 124120941 tubulin alpha-3 chain-like K07374 TUBA; tubulin alpha
E 124120942 tubulin alpha-3 chain-like K07374 TUBA; tubulin alpha
E 124120943 tubulin alpha-3 chain-like K07374 TUBA; tubulin alpha
E 124121256 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 124121257 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 124121259 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124121266 tubulin alpha-2/alpha-4 chain-like K07374 TUBA; tubulin alpha
E 124144216 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124144217 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124144218 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124144219 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124144221 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124110730 tubulin alpha chain, testis-specific-like K07374 TUBA; tubulin alpha
E 124145064 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124138077 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 124138087 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 124114404 tubulin alpha-2/alpha-4 chain K07374 TUBA; tubulin alpha
E 124114697 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124114698 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124114700 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124114704 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124149242 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124139771 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 124131042 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 124131044 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124117160 tubulin alpha-1 chain isoform X1 K07374 TUBA; tubulin alpha
E 124151171 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 125371554 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 125374067 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 125377459 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 125377474 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 125380988 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 125380989 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 124134968 cytoplasmic polyadenylation element-binding protein-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 124138114 cytoplasmic polyadenylation element-binding protein 2-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 124139846 gem-associated protein 5-like K13133 GEMIN5; gem associated protein 5
E 124118933 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 124116283 CCR4-NOT transcription complex subunit 1-like isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 124116638 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 124150890 CCR4-NOT transcription complex subunit 3-like isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 124114872 CCR4-NOT transcription complex subunit 4-like isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 124142343 uncharacterized protein LOC124142343 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 124139598 CCR4-NOT transcription complex subunit 7-like K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 124110798 DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 124146742 PAN2-PAN3 deadenylation complex catalytic subunit Pan2-like isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 124132680 PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 124146133 protein BTG2-like K14443 TOB; protein Tob/BTG
E 124139377 protein Tob1-like K14443 TOB; protein Tob/BTG
E 124117984 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 124141661 eukaryotic translation initiation factor 4E transporter-like isoform X3 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 124110487 protein PAT1 homolog 1-like isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 124118909 enhancer of mRNA-decapping protein 3-like isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 124147665 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 124140109 regulator of nonsense transcripts 2-like isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 124145967 regulator of nonsense transcripts 3B-like isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 124123121 protein wech-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124124519 RING finger protein nhl-1-like isoform X1 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124138546 E3 ubiquitin-protein ligase TRIM9-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124138571 E3 ubiquitin-protein ligase TRIM71-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124115171 uncharacterized protein LOC124115171 isoform X1 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124148968 tripartite motif-containing protein 3-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124132467 E3 ubiquitin-protein ligase TRIM56-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124132492 tripartite motif-containing protein 3-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 124124087 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 124139465 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 124142022 nucleolysin TIAR-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 124122603 uncharacterized protein LOC124122603 K13126 PABPC; polyadenylate-binding protein
E 124128332 uncharacterized protein LOC124128332 K13126 PABPC; polyadenylate-binding protein
E 125378125 polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 124117467 double-stranded RNA-binding protein Staufen homolog isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 124111139 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 124142763 ELAV-like protein 1-B K13088 ELAVL1; ELAV-like protein 1
E 124145537 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 124118967 ras GTPase-activating protein-binding protein 1-like isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 124110381 eukaryotic translation initiation factor 2A-like K15026 EIF2A; translation initiation factor 2A
E 124120458 eukaryotic translation initiation factor 3 subunit B-like K03253 EIF3B; translation initiation factor 3 subunit B
E 124152630 eukaryotic initiation factor 4A-I-like isoform X1 K03257 EIF4A; translation initiation factor 4A
E 124129237 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 124135802 eukaryotic translation initiation factor 4B-like isoform X2 K03258 EIF4B; translation initiation factor 4B
E 124138503 eukaryotic translation initiation factor 4 gamma 3-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 124115062 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 124139116 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 124133565 ribosomal protein S6 kinase alpha-1-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 124134282 receptor of activated protein C kinase 1-like K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 124143458 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 124111962 nuclear RNA export factor 1-like K14284 NXF; nuclear RNA export factor
E 124118425 tudor domain-containing protein 3-like isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 124152164 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 124122166 mRNA-decapping enzyme 1B-like K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 124145090 m7GpppN-mRNA hydrolase-like K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 124121803 ATP-dependent RNA helicase cgh-1-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 124118909 enhancer of mRNA-decapping protein 3-like isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 124147665 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 124110487 protein PAT1 homolog 1-like isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 124143404 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 124142483 U6 snRNA-associated Sm-like protein LSm2 isoform X1 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 124146140 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 124140706 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 124150337 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 124150083 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 124140782 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 124120659 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 124152504 5'-3' exoribonuclease 1-like isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 124132351 5'-3' exoribonuclease 2-like K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 124145872 U8 snoRNA-decapping enzyme-like K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 124124479 m7GpppX diphosphatase-like K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 124141190 helicase with zinc finger domain 2-like isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 124142337 probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 124136564 exosome complex component CSL4-like isoform X1 K07573 CSL4; exosome complex component CSL4
E 124118245 exosome complex component RRP4-like K03679 RRP4; exosome complex component RRP4
E 124111602 exosome complex component RRP40-like K03681 RRP40; exosome complex component RRP40
E 124140185 exosome complex component RRP41-like K11600 RRP41; exosome complex component RRP41
E 124150862 exosome complex component RRP46-like K12590 RRP46; exosome complex component RRP46
E 124135680 exosome complex component MTR3-like K12587 MTR3; exosome complex component MTR3
E 124135290 exosome complex component RRP42-like K12589 RRP42; exosome complex component RRP42
E 124113260 exosome complex component RRP43-like K12586 RRP43; exosome complex component RRP43
E 124133708 exosome complex component RRP45-like K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 124135366 exosome complex exonuclease RRP44-like K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 124113370 DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 124144994 exosome component 10-like K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 124123373 nuclear nucleic acid-binding protein C1D-like K12592 C1D; exosome complex protein LRP1
E 124123133 M-phase phosphoprotein 6-like K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 124112500 terminal nucleotidyltransferase 4B-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 124144555 zinc finger CCHC domain-containing protein 7-like K12597 AIR1_2; protein AIR1/2
E 124115582 exosome RNA helicase MTR4-like K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 124142472 helicase SKI2W-like K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 124135690 tetratricopeptide repeat protein 37-like K12600 SKI3; superkiller protein 3
E 124152707 WD repeat-containing protein 61-like K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 124142343 uncharacterized protein LOC124142343 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 124116283 CCR4-NOT transcription complex subunit 1-like isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 124116638 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 124150890 CCR4-NOT transcription complex subunit 3-like isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 124114872 CCR4-NOT transcription complex subunit 4-like isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 124139598 CCR4-NOT transcription complex subunit 7-like K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 124122152 CCR4-NOT transcription complex subunit 9-like K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 124138572 CCR4-NOT transcription complex subunit 10-like isoform X2 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 124146742 PAN2-PAN3 deadenylation complex catalytic subunit Pan2-like isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 124132680 PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 124144582 poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 124141664 pre-piRNA 3'-exonuclease trimmer-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 124144977 ATP-dependent DNA/RNA helicase DHX36-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 124146133 protein BTG2-like K14443 TOB; protein Tob/BTG
E 124139377 protein Tob1-like K14443 TOB; protein Tob/BTG
E 124117984 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 124133660 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 124143381 3'-5' exoribonuclease 1-like isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 124138591 ERI1 exoribonuclease 2-like K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 124124479 m7GpppX diphosphatase-like K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 124150374 2',5'-phosphodiesterase 12-like K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 124141190 helicase with zinc finger domain 2-like isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 124142337 probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 124134554 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134555 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134556 helicase with zinc finger domain 2-like isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134559 helicase with zinc finger domain 2-like isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134585 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134586 helicase with zinc finger domain 2-like isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134587 helicase with zinc finger domain 2-like isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124134588 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 124127358 nuclear exosome regulator NRDE2-like K26109 NRDE2; nuclear exosome regulator NRDE2
E 124149745 protein Smaug homolog 1-like isoform X1 K27396 SMG; protein Smaug
E 124150101 focadhesin-like K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 124122407 probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 124126528 uncharacterized protein LOC124126528 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 124124212 ribonuclease 3-like isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 124149492 oligoribonuclease, mitochondrial-like K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 124149604 ATP-dependent DNA helicase RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 124137664 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 124137045 polyribonucleotide nucleotidyltransferase 1, mitochondrial-like K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 124131656 ATP-dependent 6-phosphofructokinase-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 124116240 stress-70 protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 124120011 heat shock protein 60A-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 124118245 exosome complex component RRP4-like K03679 RRP4; exosome complex component RRP4
E 124136564 exosome complex component CSL4-like isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 124140185 exosome complex component RRP41-like K11600 RRP41; exosome complex component RRP41
E 124135290 exosome complex component RRP42-like K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024