+F Repair protein KO #

  DNA Repair and Recombination Proteins - Halobaculum rubrum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D K6T25_11775 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D K6T25_02735 MGMT family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D K6T25_12695 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D K6T25_13925 DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E K6T25_09710 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E K6T25_14530 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E K6T25_12765 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E K6T25_02080 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E K6T25_02930 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E K6T25_07720 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E K6T25_14140 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E K6T25_14320 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E K6T25_06270 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E K6T25_11050 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E K6T25_03650 single-stranded DNA binding protein K07466 RFA1; replication factor A1 D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E K6T25_03650 single-stranded DNA binding protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E K6T25_07720 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E K6T25_03650 single-stranded DNA binding protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D K6T25_07720 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D K6T25_08470 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D K6T25_03750 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D K6T25_08130 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D K6T25_11775 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D K6T25_02735 MGMT family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D K6T25_12695 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D K6T25_13925 DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D K6T25_10000 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E K6T25_14210 hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E K6T25_04475 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E K6T25_05860 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E K6T25_14265 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E K6T25_12185 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E K6T25_09710 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E K6T25_12765 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E K6T25_02080 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E K6T25_02930 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E K6T25_04505 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E K6T25_05665 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E K6T25_06750 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E K6T25_06400 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E K6T25_04360 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E K6T25_07465 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E K6T25_06600 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E K6T25_04525 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E K6T25_06400 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E K6T25_08065 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E K6T25_03155 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E K6T25_07645 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 E K6T25_10815 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E K6T25_08060 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL E K6T25_03325 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase E K6T25_06400 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E K6T25_04525 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E K6T25_07710 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E K6T25_15155 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E K6T25_03010 DNA double-strand break repair ATPase Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E K6T25_03015 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E K6T25_06750 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins E K6T25_13385 UvrD-helicase domain-containing protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E K6T25_13380 PD-(D/E)XK nuclease family protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E K6T25_06905 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E K6T25_09505 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E K6T25_07535 nucleoid-structuring protein H-NS K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E K6T25_03010 DNA double-strand break repair ATPase Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 E K6T25_03015 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E K6T25_07260 ATP-dependent DNA helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E K6T25_09860 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F K6T25_11340 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F K6T25_11345 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F K6T25_05210 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F K6T25_07195 endonuclease NucS K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F K6T25_06750 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F K6T25_06400 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F K6T25_01455 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F K6T25_01650 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F K6T25_04360 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F K6T25_07465 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D K6T25_12385 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D K6T25_05595 polX; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) C DNA helicases D K6T25_11880 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D K6T25_14060 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D K6T25_08470 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D K6T25_03750 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D K6T25_08130 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D K6T25_09320 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D K6T25_05625 Nre family DNA repair protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024