+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Hordeum vulgare subsp. vulgare (domesticated barley)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 123406388 mRNA cap guanine-N7 methyltransferase 1-like K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 123426718 mRNA cap guanine-N7 methyltransferase 1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 123427294 mRNA cap guanine-N7 methyltransferase 2 isoform X1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 123424528 mRNA-capping enzyme-like K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 123447875 mRNA-capping enzyme-like K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 123442302 cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 123448673 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 123402335 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 123409947 pre-mRNA cleavage factor Im 25 kDa subunit 1-like K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 123428491 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 123448653 pre-mRNA cleavage factor Im 25 kDa subunit 2-like K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 123399127 translation initiation factor IF-2-like K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 123403173 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 123412288 polyadenylation and cleavage factor homolog 4-like K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 123424542 probable cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 123452843 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 123395178 cleavage and polyadenylation specificity factor subunit 3-I-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 123451948 cleavage and polyadenylation specificity factor subunit 3-I-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 123401262 uncharacterized protein LOC123401262 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 123407783 zinc finger CCCH domain-containing protein 45 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 123399837 flowering time control protein FY K15542 PFS2; polyadenylation factor subunit 2
E 123447758 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 123447972 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 123399686 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123404067 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123406244 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123407142 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123425874 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123442731 serine/threonine-protein phosphatase alpha-3 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123443630 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123449051 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 123396352 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 123452288 cleavage stimulation factor subunit 50 K14406 CSTF1; cleavage stimulation factor subunit 1
E 123447953 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 123442691 cleavage stimulation factor subunit 77 isoform X1 K14408 CSTF3; cleavage stimulation factor subunit 3
E 123424594 uncharacterized protein LOC123424594 K06100 SYMPK; symplekin
E 123444181 uncharacterized protein LOC123444181 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 123426167 small nuclear ribonucleoprotein-associated protein B'-like K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 123396300 small nuclear ribonucleoprotein SmD3a-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 123443673 uncharacterized protein LOC123443673 isoform X1 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 123450034 small nuclear ribonucleoprotein SmD3b-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 123407643 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 123405206 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 123411396 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 123425350 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 123452843 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 123395178 cleavage and polyadenylation specificity factor subunit 3-I-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 123451948 cleavage and polyadenylation specificity factor subunit 3-I-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 123447953 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 123424594 uncharacterized protein LOC123424594 K06100 SYMPK; symplekin
E 123444181 uncharacterized protein LOC123444181 K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 123425238 transcription elongation factor SPT4 homolog 1-like K15171 SUPT4H1; transcription elongation factor SPT4
E 123403094 putative transcription elongation factor SPT5 homolog 1 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
E 123410926 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 123401385 probable N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 123449712 N6-adenosine-methyltransferase non-catalytic subunit MTB K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 123403784 RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 123413289 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 123443125 uncharacterized protein LOC123443125 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 123432265 E3 ubiquitin-protein ligase HAKAI homolog K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 123404828 nuclear poly(A) polymerase 4-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 123410067 nuclear poly(A) polymerase 4-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 123424651 nuclear poly(A) polymerase 3-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 123430364 nuclear poly(A) polymerase 4-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 123447712 nuclear poly(A) polymerase 1-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 123448802 nuclear poly(A) polymerase 3-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 123451150 nuclear poly(A) polymerase 4-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 123416662 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 123427227 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 123429569 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 123444413 uncharacterized protein LOC123444413 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 123451610 zinc finger CCCH domain-containing protein 27 K13192 RBM26; RNA-binding protein 26
E 123411015 RNA demethylase ALKBH9B-like K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 123431327 RNA demethylase ALKBH9B-like K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 123441748 RNA demethylase ALKBH10B isoform X1 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 123401904 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 123442722 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 123408309 LOW QUALITY PROTEIN: methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 123407046 serrate RNA effector molecule-like K27103 SRRT; serrate RNA effector molecule
D 123409327 serrate RNA effector molecule-like K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 123424277 RNA-binding protein Y14A K12876 RBM8A; RNA-binding protein 8A
E 123452888 RNA-binding protein Y14B-like K12876 RBM8A; RNA-binding protein 8A
E 123410409 protein mago nashi homolog 2 K12877 MAGOH; protein mago nashi
E 123407428 THO complex subunit 4D-like K12881 THOC4; THO complex subunit 4
E 123424545 THO complex subunit 4D-like K12881 THOC4; THO complex subunit 4
E 123426174 uncharacterized protein LOC123426174 isoform X1 K12881 THOC4; THO complex subunit 4
E 123448119 THO complex subunit 4B-like K12881 THOC4; THO complex subunit 4
E 123449000 THO complex subunit 4A-like K12881 THOC4; THO complex subunit 4
E 123452129 THO complex subunit 4B-like K12881 THOC4; THO complex subunit 4
E 123443683 DEAD-box ATP-dependent RNA helicase 15 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 123452774 DEAD-box ATP-dependent RNA helicase 15-like isoform X1 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 123401124 eukaryotic initiation factor 4A-III homolog B K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 123428372 eukaryotic initiation factor 4A-III homolog B-like K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 123402611 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 123447339 pinin K13114 PNN; pinin
E 123429672 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 123448495 apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 123426013 serine/arginine-rich splicing factor SR45-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 123445573 serine/arginine-rich splicing factor SR45 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 123449038 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 123450042 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 123445203 THO complex subunit 2-like isoform X1 K12879 THOC2; THO complex subunit 2
E 123445563 THO complex subunit 2-like isoform X1 K12879 THOC2; THO complex subunit 2
E 123398371 THO complex subunit 3 isoform X1 K12880 THOC3; THO complex subunit 3
E 123407428 THO complex subunit 4D-like K12881 THOC4; THO complex subunit 4
E 123424545 THO complex subunit 4D-like K12881 THOC4; THO complex subunit 4
E 123426174 uncharacterized protein LOC123426174 isoform X1 K12881 THOC4; THO complex subunit 4
E 123448119 THO complex subunit 4B-like K12881 THOC4; THO complex subunit 4
E 123449000 THO complex subunit 4A-like K12881 THOC4; THO complex subunit 4
E 123452129 THO complex subunit 4B-like K12881 THOC4; THO complex subunit 4
E 123404583 THO complex subunit 5A isoform X1 K13174 THOC5; THO complex subunit 5
E 123395025 THO complex subunit 6 K13175 THOC6; THO complex subunit 6
E 123402630 THO complex subunit 7B K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 123395959 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 123443503 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 123445232 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 123425021 SAC3 family protein B isoform X1 K23719 SAC3; nuclear mRNA export protein SAC3
E 123448671 SAC3 family protein C isoform X1 K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 123401107 nuclear-pore anchor isoform X1 K09291 TPR; nucleoprotein TPR
E 123443201 protein RAE1 K14298 RAE1; mRNA export factor
E 123443939 protein RAE1-like K14298 RAE1; mRNA export factor
E 123428006 protein transport protein SEC13 homolog A-like K14004 SEC13; protein transport protein SEC13
E 123443134 protein transport protein SEC13 homolog B-like K14004 SEC13; protein transport protein SEC13
E 123444391 nuclear pore complex protein NUP85 K14304 NUP85; nuclear pore complex protein Nup85
E 123426090 nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 123444860 nuclear pore complex protein NUP62 K14306 NUP62; nuclear pore complex protein Nup62
E 123427667 nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 123399829 nuclear pore complex protein NUP93A-like K14309 NUP93; nuclear pore complex protein Nup93
E 123408445 nuclear pore complex protein NUP98A-like K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 123443381 nuclear pore complex protein NUP98A-like isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 123448128 nuclear pore complex protein NUP98A-like isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 123449572 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 123396434 nuclear pore complex protein NUP107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 123449261 nuclear pore complex protein NUP133 K14300 NUP133; nuclear pore complex protein Nup133
E 123413161 uncharacterized protein LOC123413161 K14311 NUP188; nuclear pore complex protein Nup188
E 123449272 nuclear pore complex protein NUP155 K14312 NUP155; nuclear pore complex protein Nup155
E 123406319 nuclear pore complex protein NUP160 K14303 NUP160; nuclear pore complex protein Nup160
E 123440242 nuclear pore complex protein NUP35-like K14313 NUP35; nuclear pore complex protein Nup53
E 123443114 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 123446946 nuclear pore complex protein NUP35 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 123403152 nuclear pore complex protein NUP205 K14310 NUP205; nuclear pore complex protein Nup205
E 123452067 nuclear pore complex protein GP210 K14314 NUP210; nuclear pore complex protein Nup210
E 123424681 nuclear pore complex protein NUP214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 123397168 nuclear pore complex protein NUP58-like K14307 NUPL1; nucleoporin p58/p45
E 123398565 nuclear pore complex protein NUP58-like K14307 NUPL1; nucleoporin p58/p45
E 123410679 zinc finger CCCH domain-containing protein 46 K14321 NUPL2; nucleoporin-like protein 2
E 123415204 uncharacterized protein LOC123415204 K14315 NDC1; nucleoporin NDC1
E 123443901 protein SEH1 K14299 SEH1; nucleoporin SEH1
E 123395761 aladin K14320 AAAS; aladin
E 123401227 protein GLE1-like K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 123407682 GTP-binding nuclear protein Ran-3 isoform X1 K07936 RAN; GTP-binding nuclear protein Ran
E 123451266 GTP-binding nuclear protein Ran-2 K07936 RAN; GTP-binding nuclear protein Ran
E 123447026 acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 123434852 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 123399786 cell division control protein 48 homolog E-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123399795 cell division control protein 48 homolog E-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123435769 cell division control protein 48 homolog E-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123435785 cell division control protein 48 homolog E-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123439645 cell division control protein 48 homolog D-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123439646 cell division control protein 48 homolog D-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123439647 cell division control protein 48 homolog D-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123439648 cell division control protein 48 homolog D-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123439651 cell division control protein 48 homolog D-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123441258 cell division control protein 48 homolog E-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123449462 cell division control protein 48 homolog E-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 123449463 cell division control protein 48 homolog E K13525 VCP; transitional endoplasmic reticulum ATPase
E 123402671 protein N-lysine methyltransferase METTL21A K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 123405692 uncharacterized protein LOC123405692 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 123408502 uncharacterized protein LOC123408502 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 123442151 uncharacterized protein LOC123442151 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 123450284 protein N-lysine methyltransferase METTL21A K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 123395221 protein EXPORTIN 1A-like isoform X1 K14290 XPO1; exportin-1
E 123443533 exportin-7-A isoform X1 K18460 XPO7; exportin-7
E 123442426 RAN GTPase-activating protein 2-like K14319 RANGAP1; Ran GTPase-activating protein 1
E 123445076 RAN GTPase-activating protein 2-like K14319 RANGAP1; Ran GTPase-activating protein 1
E 123399782 nuclear transport factor 2-like K28773 NUTF2; nuclear transport factor 2
E 123407598 nuclear transport factor 2-like K28773 NUTF2; nuclear transport factor 2
E 123440352 nuclear transport factor 2B-like K28773 NUTF2; nuclear transport factor 2
D eIF4F and regulatory proteins
E 123430567 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 123445661 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 123449094 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 123406061 eukaryotic initiation factor 4A-1 K03257 EIF4A; translation initiation factor 4A
E 123413668 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E 123425732 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 123427142 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 123427394 eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 123406184 eukaryotic translation initiation factor 4B3-like K03258 EIF4B; translation initiation factor 4B
E 123427012 eukaryotic translation initiation factor 4B1 K03258 EIF4B; translation initiation factor 4B
E 123449684 protein PIR isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 123407809 DEAD-box ATP-dependent RNA helicase 52A-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 123448365 DEAD-box ATP-dependent RNA helicase 52C-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 123452849 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 123445275 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 123398305 polyadenylate-binding protein 8-like K13126 PABPC; polyadenylate-binding protein
E 123411286 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 123427184 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 123428453 uncharacterized protein LOC123428453 K13126 PABPC; polyadenylate-binding protein
E 123431269 multiple RNA-binding domain-containing protein 1-like K13126 PABPC; polyadenylate-binding protein
E 123446641 polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 123404187 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 123445662 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence
E 123442883 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 123449096 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 123405468 UBP1-associated protein 2B-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123406148 heterogeneous nuclear ribonucleoprotein 1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123406288 heterogeneous nuclear ribonucleoprotein A0-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123409642 heterogeneous nuclear ribonucleoprotein A0-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123413593 heterogeneous nuclear ribonucleoprotein 1-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123428223 RNA-binding protein P-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123443465 RNA-binding protein P-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123443873 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123445239 glycine-rich RNA-binding protein 2, mitochondrial-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123452897 glycine-rich RNA-binding protein 2, mitochondrial-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123425535 heterogeneous nuclear ribonucleoprotein 1-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 123426305 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 123430641 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 123445471 heterogeneous nuclear ribonucleoproteins A2/B1-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 123448455 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 123452411 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 123427772 HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 123428344 HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 123401032 protein PELOTA 1-like K06965 PELO; protein pelota
E 123428056 protein PELOTA 1 K06965 PELO; protein pelota
E 123405955 polyadenylate-binding protein 2-like K14396 PABPN1; polyadenylate-binding protein 2
E 123413657 polyadenylate-binding protein 2-like isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 123439156 polyadenylate-binding protein 1-like isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 123449488 DEAD-box ATP-dependent RNA helicase 38 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 123413441 pre-mRNA-splicing factor syf1 homolog K12867 SYF1; pre-mRNA-splicing factor SYF1
E 123425030 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 123451917 pre-mRNA-splicing factor SYF1-like K12867 SYF1; pre-mRNA-splicing factor SYF1
E 123448964 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 123444960 SAC3 family protein A-like isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 123445262 SAC3 family protein A isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 123412043 eukaryotic peptide chain release factor subunit 1-2-like K03265 ETF1; peptide chain release factor subunit 1
E 123425493 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 123445427 eukaryotic peptide chain release factor subunit 1-1-like K03265 ETF1; peptide chain release factor subunit 1
E 123447345 eukaryotic peptide chain release factor subunit 1-3-like K03265 ETF1; peptide chain release factor subunit 1
E 123424567 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 123426134 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 123404355 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 123427274 regulator of nonsense transcripts UPF2-like isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 123426789 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 123399499 serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 123401803 serine/threonine-protein phosphatase PP2A-3 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 123412685 serine/threonine-protein phosphatase PP2A-1 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 123449540 serine/threonine-protein phosphatase PP2A-4 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 123452851 serine/threonine-protein phosphatase PP2A-2 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 123398603 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 123406345 LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 123407426 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 123443830 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 123402277 probable serine/threonine protein phosphatase 2A regulatory subunit B''delta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 123425344 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 123430999 probable serine/threonine protein phosphatase 2A regulatory subunit B''delta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 123395059 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123400211 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123407227 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123426814 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123427048 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123442995 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123447132 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 123449661 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 123450226 serine/threonine-protein kinase SMG1-like K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 123398020 protein SMG7 K14409 SMG7; protein SMG7
E 123405901 uncharacterized protein LOC123405901 K18734 SMG8; protein SMG8
E 123411514 protein SMG9-like K18735 SMG9; protein SMG9
E 123445275 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 123398977 pumilio homolog 24-like K14844 PUF6; pumilio homology domain family member 6
E 123398978 pumilio homolog 24-like K14844 PUF6; pumilio homology domain family member 6
E 123453164 pumilio homolog 24-like K14844 PUF6; pumilio homology domain family member 6
E 123443692 egalitarian protein homolog K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 123402732 far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 123411206 far upstream element-binding protein 1-like K13210 FUBP; far upstream element-binding protein
E 123401327 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 123424588 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 123424589 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 123448935 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 123448936 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 123452502 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 123452503 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 123411776 elongation factor 1-gamma 2-like K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E 123449684 protein PIR isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 123395111 KH domain-containing protein At4g18375-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123396026 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123399608 RNA-binding KH domain-containing protein RCF3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123404116 RNA-binding KH domain-containing protein PEPPER-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123407590 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123429333 flowering locus K homology domain-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123432196 KH domain-containing protein At4g18375-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123439185 RNA-binding KH domain-containing protein PEPPER-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123443288 KH domain-containing protein HEN4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123445624 KH domain-containing protein At4g18375-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123447724 flowering locus K homology domain-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 123448685 RNA-binding KH domain-containing protein RCF3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 123395895 LOW QUALITY PROTEIN: protein argonaute 16-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123398927 protein argonaute MEL1-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123401132 protein argonaute 1C-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123401630 protein argonaute 1A-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123405270 protein argonaute PNH1-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123409610 protein argonaute 1D-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123411940 protein argonaute 4B-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123413304 protein argonaute PNH1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123413596 protein argonaute 1B-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123425312 protein argonaute 14-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123427487 protein argonaute 1B isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123427571 protein argonaute 7 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123427593 protein argonaute 2-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123427597 protein argonaute 2-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123427598 protein argonaute 2-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123439511 protein argonaute 18-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123443511 protein argonaute 4A K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123451009 protein argonaute 12-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123451010 protein argonaute 12-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123452899 LOW QUALITY PROTEIN: protein argonaute 4B-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 123430567 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 123445661 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 123449094 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 123426134 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 123407809 DEAD-box ATP-dependent RNA helicase 52A-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 123448365 DEAD-box ATP-dependent RNA helicase 52C-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 123452849 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 123401333 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 123427339 DEAD-box ATP-dependent RNA helicase 6 isoform X1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 123433531 DEAD-box ATP-dependent RNA helicase 12 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 123412881 protein decapping 5-like K18749 LSM14; protein LSM14
E 123442363 protein decapping 5-like K18749 LSM14; protein LSM14
E 123449501 probable RNA helicase SDE3 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 123428549 transportin-1 K18752 TNPO1; transportin-1
E 123450226 serine/threonine-protein kinase SMG1-like K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 123398020 protein SMG7 K14409 SMG7; protein SMG7
E 123448854 putative zinc finger CCCH domain-containing protein 21 K18753 ZFP36L; butyrate response factor
E 123405468 UBP1-associated protein 2B-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123406148 heterogeneous nuclear ribonucleoprotein 1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123406288 heterogeneous nuclear ribonucleoprotein A0-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123409642 heterogeneous nuclear ribonucleoprotein A0-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123413593 heterogeneous nuclear ribonucleoprotein 1-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123428223 RNA-binding protein P-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123443465 RNA-binding protein P-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123443873 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123445239 glycine-rich RNA-binding protein 2, mitochondrial-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123452897 glycine-rich RNA-binding protein 2, mitochondrial-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 123397460 la-related protein 1B-like K18757 LARP1; la-related protein 1
E 123400185 la-related protein 1B-like K18757 LARP1; la-related protein 1
E 123443470 la-related protein 1A isoform X1 K18757 LARP1; la-related protein 1
E 123449478 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
D P-body specific factors
E 123402545 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 123394949 mRNA-decapping enzyme-like protein isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 123395679 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 123448041 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 123426834 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 123411046 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 123444803 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 123446676 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 123443408 probable U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 123439740 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 123426544 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 123410023 sm-like protein LSM7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 123428240 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 123452804 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 123425595 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 123447635 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 123448787 tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 123449291 tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 123452449 tubulin alpha-2 chain-like K07374 TUBA; tubulin alpha
E 123438675 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 123449980 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 123399853 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123402018 LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123406341 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123444454 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123441633 uncharacterized protein LOC123441633 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 123446909 general negative regulator of transcription subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 123398966 uncharacterized protein LOC123398966 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 123443167 flocculation protein FLO11-like K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 123429162 carbon catabolite repressor protein 4 homolog 1-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 123439722 carbon catabolite repressor protein 4 homolog 4-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 123398198 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123401958 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123407890 probable CCR4-associated factor 1 homolog 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123408083 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123431274 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123442044 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123442046 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123442048 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123401284 DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 123400158 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 123444512 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 123447445 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 123404134 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 123412041 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 123404355 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 123427274 regulator of nonsense transcripts UPF2-like isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 123426789 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 123441807 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 123426224 uncharacterized protein LOC123426224 K20102 YTHDF; YTH domain-containing family protein
E 123444110 YTH domain-containing protein ECT3 K20102 YTHDF; YTH domain-containing family protein
E 123448786 YTH domain-containing protein ECT4-like K20102 YTHDF; YTH domain-containing family protein
E 123452218 YTH domain-containing protein ECT4-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 123411622 RNA-binding protein 208 K13201 TIA1; nucleolysin TIA-1/TIAR
E 123425320 oligouridylate-binding protein 1-like K13201 TIA1; nucleolysin TIA-1/TIAR
E 123448427 oligouridylate-binding protein 1B-like K13201 TIA1; nucleolysin TIA-1/TIAR
E 123398305 polyadenylate-binding protein 8-like K13126 PABPC; polyadenylate-binding protein
E 123411286 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 123427184 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 123428453 uncharacterized protein LOC123428453 K13126 PABPC; polyadenylate-binding protein
E 123431269 multiple RNA-binding domain-containing protein 1-like K13126 PABPC; polyadenylate-binding protein
E 123446641 polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 123426482 nuclear transport factor 2-like isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 123401582 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 123397255 eukaryotic translation initiation factor 3 subunit B-like isoform X1 K03253 EIF3B; translation initiation factor 3 subunit B
E 123447805 eukaryotic translation initiation factor 3 subunit B-like K03253 EIF3B; translation initiation factor 3 subunit B
E 123452734 eukaryotic translation initiation factor 3 subunit B-like K03253 EIF3B; translation initiation factor 3 subunit B
E 123406061 eukaryotic initiation factor 4A-1 K03257 EIF4A; translation initiation factor 4A
E 123413668 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E 123401124 eukaryotic initiation factor 4A-III homolog B K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 123428372 eukaryotic initiation factor 4A-III homolog B-like K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 123406184 eukaryotic translation initiation factor 4B3-like K03258 EIF4B; translation initiation factor 4B
E 123427012 eukaryotic translation initiation factor 4B1 K03258 EIF4B; translation initiation factor 4B
E 123425732 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 123427142 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 123427394 eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 123444140 guanine nucleotide-binding protein subunit beta-like protein A K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 123449378 guanine nucleotide-binding protein subunit beta-like protein A K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 123395110 LOW QUALITY PROTEIN: histone deacetylase 15-like K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 123442996 tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 123394949 mRNA-decapping enzyme-like protein isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 123395679 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 123448041 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 123402545 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 123401333 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 123427339 DEAD-box ATP-dependent RNA helicase 6 isoform X1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 123433531 DEAD-box ATP-dependent RNA helicase 12 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 123404134 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 123412041 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 123400158 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 123444512 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 123447445 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 123426834 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 123411046 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 123444803 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 123446676 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 123443408 probable U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 123439740 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 123426544 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 123410023 sm-like protein LSM7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 123428240 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 123452804 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 123444770 5'-3' exoribonuclease 3-like isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 123452664 5'-3' exoribonuclease 4-like K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 123451932 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 123405160 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 123410114 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 123444021 putative exosome complex component rrp40 K03681 RRP40; exosome complex component RRP40
E 123449937 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 123395192 exosome complex exonuclease RRP46 homolog K12590 RRP46; exosome complex component RRP46
E 123425183 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 123409844 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 123447761 exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 123402057 exosome complex component RRP45A-like isoform X1 K03678 RRP45; exosome complex component RRP45
E 123412118 exosome complex component RRP45A-like isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 123449790 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 123429464 protein RRP6-like 2 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 123449486 protein RRP6-like 1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 123407459 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 123442659 uncharacterized protein LOC123442659 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 123444076 terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 123412777 DExH-box ATP-dependent RNA helicase DExH9 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 123425158 DExH-box ATP-dependent RNA helicase DExH10-like K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 123447952 DExH-box ATP-dependent RNA helicase DExH10-like isoform X1 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 123404187 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 123438108 tetratricopeptide repeat protein SKI3 isoform X1 K12600 SKI3; superkiller protein 3
E 123448407 WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 123429162 carbon catabolite repressor protein 4 homolog 1-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 123439722 carbon catabolite repressor protein 4 homolog 4-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 123438675 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 123449980 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 123399853 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123402018 LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123406341 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123444454 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 123441633 uncharacterized protein LOC123441633 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 123446909 general negative regulator of transcription subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 123398966 uncharacterized protein LOC123398966 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 123443167 flocculation protein FLO11-like K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 123398198 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123401958 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123407890 probable CCR4-associated factor 1 homolog 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123408083 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123431274 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123442044 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123442046 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123442048 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 123427622 CCR4-NOT transcription complex subunit 9-like isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 123431497 CCR4-NOT transcription complex subunit 9-like isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 123452562 CCR4-NOT transcription complex subunit 9-like isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 123399448 CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 123402508 ABC transporter I family member 19-like K12608 CAF16; CCR4-NOT complex subunit CAF16
E 123448788 ABC transporter I family member 20 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 123398014 poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 123426963 poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 123430684 DExH-box ATP-dependent RNA helicase DExH1 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 123442414 DExH-box ATP-dependent RNA helicase DExH3-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 123444507 DExH-box ATP-dependent RNA helicase DExH6-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 123452229 DExH-box ATP-dependent RNA helicase DExH3 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 123443604 ERI1 exoribonuclease 2-like K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 123404721 nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 123442809 protein RST1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 123402941 oligoribonuclease-like K13288 orn; oligoribonuclease [EC:3.1.-.-]
E 123426427 oligoribonuclease-like isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 123424695 ATP-dependent DNA helicase RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 123395557 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123400197 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123400198 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123405022 enolase 1-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123409930 enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123428756 enolase 1-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123449064 cytosolic enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 123405999 polyribonucleotide nucleotidyltransferase 2, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 123426165 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 123398234 ATP-dependent 6-phosphofructokinase 5, chloroplastic-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 123400133 ATP-dependent 6-phosphofructokinase 5, chloroplastic-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 123406988 ATP-dependent 6-phosphofructokinase 5, chloroplastic-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 123407276 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 123430404 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 123442903 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 123446765 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 123399461 heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 123444460 heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 123450028 heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 123403144 ruBisCO large subunit-binding protein subunit beta, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123404891 ruBisCO large subunit-binding protein subunit beta, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123413142 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123424470 ruBisCO large subunit-binding protein subunit alpha, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123426809 ruBisCO large subunit-binding protein subunit beta, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123430302 chaperonin CPN60-1, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123446944 chaperonin CPN60-1, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123448213 chaperonin CPN60-like 2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123449681 chaperonin CPN60-1, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123450776 ruBisCO large subunit-binding protein subunit beta, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 123452026 ruBisCO large subunit-binding protein subunit alpha-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 123405160 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 123410114 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 123451932 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 123449937 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 123409844 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 26, 2026