+E Ribosome biogenesis KO
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Ribosome Biogenesis - Haloquadratum walsbyi C23
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D Hqrw_2878 nop5; rRNA/tRNA 2'-O-methyltransferase complex protein Nop5 K14564 NOP56; nucleolar protein 56
C Box H/ACA snoRNPs
D Hqrw_1285 nop10; tRNA/rRNA pseudouridine synthase complex protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
D Hqrw_3569 dim2; probable ribosome biogenesis protein Dim2 K06961 KRR1; ribosomal RNA assembly protein
B Pre-40S particles
C Kinases
D Hqrw_3924 rio1; RIO-type serine/threonine protein kinase Rio1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Hqrw_1497 rio2; RIO-type serine/threonine protein kinase Rio2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D Hqrw_3887 adk2; probable adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3]
D Hqrw_3680 probable 16S rRNA maturation protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
C Other pre-40S particles
D Hqrw_1434 ABCE1 family ribosome recycling factor K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
C GTPases
D Hqrw_3681 probable GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
C RNases
D RNase MRP
E Hqrw_3222 rnp1; ribonuclease P protein component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E Hqrw_1615 rnp2; ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E Hqrw_1613 rnp3; ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
C Kinases
C Export and cytoplasmic maturation factors
D Hqrw_3950 tif6; translation initiation factor aIF-6 K03264 EIF6; translation initiation factor 6
D Hqrw_3962 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3
D Hqrw_2813 SBDS family protein K14574 SDO1; ribosome maturation protein SDO1
C 5-FMC complex
C Ribosome quality control proteins
D Hqrw_3720 cdc48a; AAA-type ATPase (CDC48 subfamily) K13525 VCP; transitional endoplasmic reticulum ATPase
D Hqrw_3067 cdc48b; AAA-type ATPase (CDC48 subfamily) K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
C Hqrw_4153 oapA; origin-associated GTP-binding protein OapA K03595 era; GTPase
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D Hqrw_2878 nop5; rRNA/tRNA 2'-O-methyltransferase complex protein Nop5 K14564 NOP56; nucleolar protein 56
D Hqrw_2877 fib; fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K04795 flpA; fibrillarin-like pre-rRNA processing protein
D Hqrw_3282 rpl8e; 50S ribosomal protein L8e K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D Hqrw_1603 gar1; tRNA/rRNA pseudouridine synthase complex protein Gar1 K07569 gar1; RNA-binding protein
D Hqrw_1285 nop10; tRNA/rRNA pseudouridine synthase complex protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C Hqrw_3918 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
B rRNA modification factors
C 16S rRNA modification factors
D Hqrw_3275 ksgA; ribosome biogenesis protein KsgA, 16S rRNA-methylating K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
C 23S rRNA modification factors
D Hqrw_4101 rlmE; 23S rRNA (uridine-2'-O-) methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
C Hqrw_3653 GNAT family acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Hqrw_1464 ATP-grasp fold protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C Hqrw_3165 DUF181 family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
B rRNA processing factors
B rRNA helicases
B GTPases
C Hqrw_4153 oapA; origin-associated GTP-binding protein OapA K03595 era; GTPase
C Hqrw_2585 hflX; ribosome-associating GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C Hqrw_4123 yrdC; threonylcarbamoyl-AMP synthase YrdC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Hqrw_2800 CRM domain protein K07574 yhbY; RNA-binding protein
C Hqrw_2954 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C Hqrw_1473 aubA; RNA-binding protein AU-1 K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024