+D GENES KO #

  KEGG Orthology (KO) - Candidatus Improbicoccus pseudotrichonymphae

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:ips00010] D CfP315_0642 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CfP315_0408 class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CfP315_0499 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CfP315_0091 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CfP315_0454 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CfP315_0883 pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CfP315_0815 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D CfP315_0294 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CfP315_0511 PTS transporter subunit IIABC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] C 00020 Citrate cycle (TCA cycle) [PATH:ips00020] D CfP315_0815 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D CfP315_0883 pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:ips00030] D CfP315_0642 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CfP315_0912 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CfP315_0830 transketolase alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CfP315_0850 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CfP315_0579 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CfP315_0809 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CfP315_0408 class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:ips00040] D CfP315_0522 UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CfP315_0912 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CfP315_0302 ribulose-5-phosphate reductase K05352 tarJ; ribitol-5-phosphate 2-dehydrogenase (NADP+) [EC:1.1.1.405] D CfP315_0334 D-ribitol-5-phosphate cytidylyltransferase K21030 tarI; D-ribitol-5-phosphate cytidylyltransferase [EC:2.7.7.40] C 00051 Fructose and mannose metabolism [PATH:ips00051] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CfP315_0408 class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CfP315_0499 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CfP315_0579 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:ips00052] D CfP315_0318 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CfP315_0522 UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:ips00500] D CfP315_0522 UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CfP315_0294 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CfP315_0511 PTS transporter subunit IIABC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CfP315_0642 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ips00520] D CfP315_0294 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CfP315_0040 glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CfP315_0562 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D CfP315_0473 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CfP315_0750 NTP transferase domain-containing protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CfP315_0003 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CfP315_0725 UDP-N-acetylglucosamine 1-carboxyvinyltransferas K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CfP315_0163 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CfP315_0511 PTS transporter subunit IIABC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CfP315_0522 UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CfP315_0318 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CfP315_0642 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:ips00620] D CfP315_0883 pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CfP315_0053 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CfP315_0032 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D CfP315_0815 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D CfP315_0454 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism D CfP315_0757 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00640 Propanoate metabolism [PATH:ips00640] D CfP315_0053 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CfP315_0032 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D CfP315_0462 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism D CfP315_0883 pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism D CfP315_0499 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:ips00190] D CfP315_0364 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D CfP315_0363 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D CfP315_0683 V-type ATPase subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D CfP315_0672 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D CfP315_0366 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D CfP315_0684 V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D CfP315_0405 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:ips00710] D CfP315_0091 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CfP315_0408 class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CfP315_0830 transketolase alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CfP315_0850 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CfP315_0579 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CfP315_0499 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CfP315_0912 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CfP315_0454 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:ips00720] D CfP315_0883 pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CfP315_0454 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CfP315_0313 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CfP315_0032 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D CfP315_0053 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:ips00680] D CfP315_0757 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CfP315_0408 class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CfP315_0053 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00910 Nitrogen metabolism D CfP315_0488 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] C 00920 Sulfur metabolism D CfP315_0811 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:ips00061] D CfP315_0248 acyl carrier protein K02078 acpP; acyl carrier protein D CfP315_0268 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00062 Fatty acid elongation C 00071 Fatty acid degradation C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:ips00561] D CfP315_0435 phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CfP315_0326 glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D CfP315_0262 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:ips00564] D CfP315_0411 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D CfP315_0326 glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D CfP315_0262 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CfP315_0690 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CfP315_0300 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D CfP315_0667 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:ips00230] D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CfP315_0809 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CfP315_0130 5'-nucleotidase C-terminal domain-containing protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D CfP315_0161 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D CfP315_0797 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D CfP315_0784 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CfP315_0176 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D CfP315_0841 YmdB family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D CfP315_0116 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:ips00240] D CfP315_0542 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CfP315_0541 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CfP315_0413 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CfP315_0540 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D CfP315_0544 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D CfP315_0543 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D CfP315_0421 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D CfP315_0526 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CfP315_0162 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D CfP315_0869 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D CfP315_0130 5'-nucleotidase C-terminal domain-containing protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D CfP315_0841 YmdB family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D CfP315_0784 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CfP315_0324 cytidine deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CfP315_0574 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D CfP315_0701 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CfP315_0348 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:ips00250] D CfP315_0589 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D CfP315_0413 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CfP315_0488 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CfP315_0542 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CfP315_0541 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CfP315_0040 glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:ips00260] D CfP315_0483 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CfP315_0247 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CfP315_0757 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00270 Cysteine and methionine metabolism [PATH:ips00270] D CfP315_0202 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CfP315_0483 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CfP315_0247 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] C 00280 Valine, leucine and isoleucine degradation C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis [PATH:ips00300] D CfP315_0483 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CfP315_0247 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CfP315_0532 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CfP315_0679 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CfP315_0043 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CfP315_0745 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D CfP315_0409 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CfP315_0340 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation C 00220 Arginine biosynthesis [PATH:ips00220] D CfP315_0542 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CfP315_0541 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CfP315_0488 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] C 00330 Arginine and proline metabolism C 00340 Histidine metabolism C 00350 Tyrosine metabolism C 00360 Phenylalanine metabolism C 00380 Tryptophan metabolism C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:ips00430] D CfP315_0032 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D CfP315_0053 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:ips00440] D CfP315_0156 PHP domain-containing protein K20859 phnPP; phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57] C 00450 Selenocompound metabolism [PATH:ips00450] D CfP315_0276 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CfP315_0389 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D CfP315_0757 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:ips00470] D CfP315_0455 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CfP315_0840 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CfP315_0043 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] C 00480 Glutathione metabolism B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ips00541] D CfP315_0522 UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CfP315_0318 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CfP315_0473 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CfP315_0750 NTP transferase domain-containing protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:ips00550] D CfP315_0003 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CfP315_0725 UDP-N-acetylglucosamine 1-carboxyvinyltransferas K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CfP315_0163 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CfP315_0710 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CfP315_0840 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CfP315_0409 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CfP315_0340 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CfP315_0391 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CfP315_0575 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CfP315_0908 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CfP315_0335 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CfP315_0437 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CfP315_0700 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CfP315_0829 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CfP315_0907 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CfP315_0031 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:ips00552] D CfP315_0575 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CfP315_0884 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:ips00730] D CfP315_0372 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D CfP315_0412 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0882 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0311 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CfP315_0347 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CfP315_0373 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CfP315_0374 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D CfP315_0371 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D CfP315_0116 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism D CfP315_0373 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] C 00750 Vitamin B6 metabolism C 00760 Nicotinate and nicotinamide metabolism [PATH:ips00760] D CfP315_0130 5'-nucleotidase C-terminal domain-containing protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] C 00770 Pantothenate and CoA biosynthesis D CfP315_0146 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism [PATH:ips00780] D CfP315_0268 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:ips00790] D CfP315_0140 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D CfP315_0493 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D CfP315_0492 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D CfP315_0292 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] C 00670 One carbon pool by folate [PATH:ips00670] D CfP315_0313 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CfP315_0757 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CfP315_0451 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CfP315_0348 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:ips00860] D CfP315_0500 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CfP315_0338 radical SAM protein K22226 ahbC; Fe-coproporphyrin III synthase C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:ips00900] D CfP315_0347 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CfP315_0463 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D CfP315_0560 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D CfP315_0234 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D CfP315_0513 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D CfP315_0742 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D CfP315_0391 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D CfP315_0830 transketolase alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CfP315_0850 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:ips00261] D CfP315_0483 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CfP315_0247 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CfP315_0532 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CfP315_0679 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis D CfP315_0664 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D CfP315_0268 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D CfP315_0248 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:ips03020] D CfP315_0228 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CfP315_0227 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CfP315_0123 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CfP315_0798 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:ips03010] D CfP315_0042 S1 RNA-binding domain-containing protein K02945 RP-S1; small subunit ribosomal protein S1 D CfP315_0427 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CfP315_0102 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CfP315_0122 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CfP315_0113 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CfP315_0344 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CfP315_0922 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CfP315_0110 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CfP315_0403 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CfP315_0095 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CfP315_0121 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CfP315_0921 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CfP315_0120 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CfP315_0109 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CfP315_0126 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CfP315_0304 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CfP315_0105 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CfP315_0346 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CfP315_0100 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CfP315_0425 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CfP315_0807 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CfP315_0099 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CfP315_0096 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CfP315_0097 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CfP315_0108 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CfP315_0111 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CfP315_0747 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CfP315_0393 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CfP315_0746 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CfP315_0806 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CfP315_0404 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CfP315_0106 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CfP315_0114 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CfP315_0103 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CfP315_0124 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CfP315_0112 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CfP315_0821 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CfP315_0584 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CfP315_0508 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CfP315_0101 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CfP315_0098 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CfP315_0107 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CfP315_0507 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CfP315_0224 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CfP315_0104 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CfP315_0174 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CfP315_0755 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CfP315_0803 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CfP315_0341 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CfP315_0585 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CfP315_0119 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 C 00970 Aminoacyl-tRNA biosynthesis [PATH:ips00970] D CfP315_0500 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CfP315_0824 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CfP315_0267 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CfP315_0825 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CfP315_0041 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CfP315_0283 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CfP315_0309 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CfP315_0854 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CfP315_0558 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CfP315_0226 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CfP315_0301 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CfP315_0389 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CfP315_0451 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CfP315_0661 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CfP315_0380 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CfP315_0657 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CfP315_0759 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CfP315_0379 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CfP315_0506 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CfP315_0698 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CfP315_0766 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CfP315_0765 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CfP315_0834 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CfP315_0452 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:ips03060] D CfP315_0115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CfP315_0804 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CfP315_0144 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CfP315_0323 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CfP315_0423 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CfP315_0303 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CfP315_0505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CfP315_0820 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:ips04122] D CfP315_0412 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0882 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0479 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CfP315_0311 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:ips03018] D CfP315_0395 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CfP315_0501 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CfP315_0027 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CfP315_0255 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CfP315_0405 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] B B 09124 Replication and repair C 03030 DNA replication [PATH:ips03030] D CfP315_0911 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CfP315_0055 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CfP315_0422 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CfP315_0632 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CfP315_0490 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CfP315_0325 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CfP315_0177 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CfP315_0345 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CfP315_0801 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CfP315_0662 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:ips03410] D CfP315_0299 DNA-3-methyladenine glycosylase 2 family protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D CfP315_0438 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CfP315_0729 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D CfP315_0641 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CfP315_0694 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CfP315_0662 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:ips03420] D CfP315_0033 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CfP315_0662 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:ips03430] D CfP315_0033 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CfP315_0378 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CfP315_0356 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CfP315_0694 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CfP315_0345 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CfP315_0911 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CfP315_0490 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CfP315_0055 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CfP315_0632 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CfP315_0422 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CfP315_0662 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:ips03440] D CfP315_0694 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CfP315_0345 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CfP315_0368 recombinase RecA K03553 recA; recombination protein RecA D CfP315_0561 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CfP315_0874 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CfP315_0911 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CfP315_0490 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CfP315_0055 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CfP315_0632 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CfP315_0422 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CfP315_0799 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:ips02010] D CfP315_0813 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D CfP315_0693 spermidine/putrescine ABC transporter permease component II K11070 potC; spermidine/putrescine transport system permease protein D CfP315_0316 spermidine/putrescine ABC transporter permease component I K11071 potB; spermidine/putrescine transport system permease protein D CfP315_0489 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D CfP315_0150 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CfP315_0149 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D CfP315_0148 phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D CfP315_0044 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CfP315_0503 ABC transporter permease subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D CfP315_0233 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D CfP315_0179 zinc ABC transporter permease K09816 znuB; zinc transport system permease protein D CfP315_0232 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CfP315_0085 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D CfP315_0847 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein D CfP315_0295 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein C 02060 Phosphotransferase system (PTS) [PATH:ips02060] D CfP315_0763 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CfP315_0154 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D CfP315_0764 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D CfP315_0294 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CfP315_0511 PTS transporter subunit IIABC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] C 03070 Bacterial secretion system [PATH:ips03070] D CfP315_0804 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CfP315_0144 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CfP315_0115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CfP315_0323 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CfP315_0423 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CfP315_0505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CfP315_0303 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:ips02020] D CfP315_0474 response regulator transcription factor K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CfP315_0150 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CfP315_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CfP315_0865 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:ips02024] D CfP315_0804 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CfP315_0144 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CfP315_0115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CfP315_0323 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D CfP315_0423 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CfP315_0505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CfP315_0303 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CfP315_0865 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly D CfP315_0178 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:ips01501] D CfP315_0437 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CfP315_0700 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CfP315_0829 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:ips01502] D CfP315_0340 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CfP315_0908 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CfP315_0335 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ips01503] D CfP315_0861 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:ips01000] C 01001 Protein kinases [BR:ips01001] D CfP315_0628 Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D CfP315_0880 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] C 01009 Protein phosphatases and associated proteins [BR:ips01009] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 01002 Peptidases and inhibitors [BR:ips01002] D CfP315_0478 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D CfP315_0040 glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CfP315_0589 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D CfP315_0298 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D CfP315_0858 class B sortase K08600 srtB; sortase B [EC:3.4.22.71] D CfP315_0895 zinc carboxypeptidase K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11] D CfP315_0666 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CfP315_0674 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CfP315_0514 site-2 protease family protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CfP315_0031 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CfP315_0089 ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CfP315_0820 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CfP315_0147 SpoIVB peptidase K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D CfP315_0197 HK97 family phage prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease D CfP315_0607 HK97 family phage prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease C 01003 Glycosyltransferases [BR:ips01003] D CfP315_0437 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ips01011] D CfP315_0003 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CfP315_0725 UDP-N-acetylglucosamine 1-carboxyvinyltransferas K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CfP315_0163 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CfP315_0710 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CfP315_0840 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CfP315_0409 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CfP315_0455 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CfP315_0908 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CfP315_0335 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CfP315_0575 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CfP315_0437 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CfP315_0700 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CfP315_0829 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CfP315_0907 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CfP315_0031 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CfP315_0858 class B sortase K08600 srtB; sortase B [EC:3.4.22.71] D CfP315_0440 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D CfP315_0861 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:ips01004] D CfP315_0268 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CfP315_0435 phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CfP315_0326 glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D CfP315_0262 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:ips01006] D CfP315_0391 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CfP315_0045 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:ips01007] D CfP315_0500 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CfP315_0041 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CfP315_0834 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CfP315_0452 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CfP315_0301 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CfP315_0379 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CfP315_0389 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CfP315_0657 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CfP315_0661 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CfP315_0380 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CfP315_0759 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CfP315_0309 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CfP315_0698 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CfP315_0854 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CfP315_0226 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CfP315_0506 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CfP315_0558 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CfP315_0283 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CfP315_0766 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CfP315_0765 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CfP315_0745 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:ips03000] D CfP315_0202 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CfP315_0708 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D CfP315_0029 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CfP315_0808 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR C 03021 Transcription machinery [BR:ips03021] D CfP315_0123 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CfP315_0228 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CfP315_0227 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CfP315_0798 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CfP315_0178 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CfP315_0022 sigma-70 family RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CfP315_0349 RNA polymerase sporulation sigma factor SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CfP315_0477 RNA polymerase sporulation sigma factor SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CfP315_0894 RNA polymerase sporulation sigma factor SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CfP315_0305 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D CfP315_0333 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CfP315_0805 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D CfP315_0933 SpoIIE family protein phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D CfP315_0881 anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D CfP315_0880 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D CfP315_0758 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA C 03019 Messenger RNA biogenesis [BR:ips03019] D CfP315_0383 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CfP315_0501 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D CfP315_0395 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CfP315_0855 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CfP315_0027 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CfP315_0255 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CfP315_0405 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 03041 Spliceosome C 03011 Ribosome [BR:ips03011] D CfP315_0042 S1 RNA-binding domain-containing protein K02945 RP-S1; small subunit ribosomal protein S1 D CfP315_0427 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CfP315_0102 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CfP315_0122 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CfP315_0113 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CfP315_0344 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CfP315_0922 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CfP315_0110 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CfP315_0403 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CfP315_0095 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CfP315_0121 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CfP315_0921 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CfP315_0120 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CfP315_0109 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CfP315_0126 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CfP315_0304 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CfP315_0105 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CfP315_0346 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CfP315_0100 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CfP315_0425 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CfP315_0807 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CfP315_0099 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CfP315_0096 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CfP315_0097 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CfP315_0108 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CfP315_0111 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CfP315_0393 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CfP315_0746 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CfP315_0806 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CfP315_0747 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CfP315_0404 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CfP315_0106 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CfP315_0114 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CfP315_0103 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CfP315_0124 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CfP315_0112 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CfP315_0821 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CfP315_0584 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CfP315_0508 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CfP315_0101 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CfP315_0098 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CfP315_0107 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CfP315_0507 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CfP315_0224 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CfP315_0104 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CfP315_0174 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CfP315_0755 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CfP315_0803 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CfP315_0341 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CfP315_0585 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CfP315_0119 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 C 03009 Ribosome biogenesis [BR:ips03009] D CfP315_0383 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CfP315_0305 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D CfP315_0333 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CfP315_0805 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D CfP315_0644 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6)) -dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CfP315_0515 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CfP315_0258 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CfP315_0629 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CfP315_0401 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CfP315_0659 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D CfP315_0756 ribosome biogenesis GTPase Der K03977 engA; GTPase D CfP315_0819 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A D CfP315_0571 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CfP315_0810 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D CfP315_0402 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D CfP315_0019 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:ips03016] D CfP315_0500 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CfP315_0506 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CfP315_0657 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CfP315_0380 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CfP315_0389 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CfP315_0041 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CfP315_0379 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CfP315_0759 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CfP315_0309 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CfP315_0283 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CfP315_0854 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CfP315_0558 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CfP315_0226 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CfP315_0301 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CfP315_0661 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CfP315_0698 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CfP315_0766 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CfP315_0765 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CfP315_0834 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CfP315_0452 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CfP315_0287 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CfP315_0086 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CfP315_0412 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0882 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0571 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CfP315_0045 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CfP315_0005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CfP315_0649 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CfP315_0342 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CfP315_0420 tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D CfP315_0245 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D CfP315_0697 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D CfP315_0060 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CfP315_0370 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D CfP315_0479 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CfP315_0311 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CfP315_0675 tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CfP315_0131 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CfP315_0400 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CfP315_0395 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:ips03012] D CfP315_0307 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CfP315_0164 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CfP315_0426 elongation factor Ts K02357 tsf; elongation factor Ts D CfP315_0842 elongation factor Tu K02358 tuf; elongation factor Tu D CfP315_0923 elongation factor G K02355 fusA; elongation factor G D CfP315_0432 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D CfP315_0392 ribosome recycling factor K02838 frr; ribosome recycling factor D CfP315_0866 peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D CfP315_0157 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D CfP315_0118 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CfP315_0290 elongation factor P K02356 efp; elongation factor P D CfP315_0036 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:ips03110] D CfP315_0090 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D CfP315_0027 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CfP315_0255 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CfP315_0026 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D CfP315_0028 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D CfP315_0256 co-chaperone GroES K04078 groES; chaperonin GroES D CfP315_0674 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CfP315_0277 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:ips03032] D CfP315_0801 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CfP315_0202 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CfP315_0876 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CfP315_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CfP315_0325 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CfP315_0213 putative DnaC K02315 dnaC; DNA replication protein DnaC D CfP315_0624 putative DnaC K02315 dnaC; DNA replication protein DnaC D CfP315_0177 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CfP315_0345 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CfP315_0911 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CfP315_0490 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CfP315_0632 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CfP315_0422 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CfP315_0055 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CfP315_0662 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CfP315_0631 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CfP315_0145 DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CfP315_0436 type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:ips03036] D CfP315_0202 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CfP315_0383 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CfP315_0876 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CfP315_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CfP315_0295 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CfP315_0485 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D CfP315_0909 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; cell division protein FtsW D CfP315_0847 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein D CfP315_0173 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CfP315_0861 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CfP315_0656 DivIVA domain-containing protein K04074 divIVA; cell division initiation protein D CfP315_0655 cell division protein SepF K09772 sepF; cell division inhibitor SepF D CfP315_0476 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D CfP315_0034 FtsW/RodA/SpoVE family cell cycle protein K05837 rodA; rod shape determining protein RodA D CfP315_0649 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CfP315_0515 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] C 03400 DNA repair and recombination proteins [BR:ips03400] D CfP315_0299 DNA-3-methyladenine glycosylase 2 family protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D CfP315_0438 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CfP315_0701 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CfP315_0729 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D CfP315_0641 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CfP315_0694 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CfP315_0662 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CfP315_0033 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CfP315_0228 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CfP315_0227 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CfP315_0123 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CfP315_0798 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CfP315_0378 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CfP315_0356 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CfP315_0911 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CfP315_0490 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CfP315_0632 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CfP315_0422 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CfP315_0055 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CfP315_0345 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CfP315_0368 recombinase RecA K03553 recA; recombination protein RecA D CfP315_0561 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CfP315_0799 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CfP315_0874 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CfP315_0222 helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D CfP315_0322 helicase-exonuclease AddAB subunit AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D CfP315_0631 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CfP315_0145 DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CfP315_0436 type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CfP315_0876 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D CfP315_0811 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:ips03029] D CfP315_0307 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CfP315_0164 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CfP315_0426 elongation factor Ts K02357 tsf; elongation factor Ts D CfP315_0842 elongation factor Tu K02358 tuf; elongation factor Tu D CfP315_0923 elongation factor G K02355 fusA; elongation factor G D CfP315_0834 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CfP315_0380 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CfP315_0309 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CfP315_0854 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CfP315_0379 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CfP315_0824 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CfP315_0267 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CfP315_0825 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CfP315_0345 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CfP315_0027 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CfP315_0028 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D CfP315_0255 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CfP315_0256 co-chaperone GroES K04078 groES; chaperonin GroES D CfP315_0026 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D CfP315_0412 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0882 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:ips02000] D CfP315_0155 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CfP315_0813 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D CfP315_0693 spermidine/putrescine ABC transporter permease component II K11070 potC; spermidine/putrescine transport system permease protein D CfP315_0316 spermidine/putrescine ABC transporter permease component I K11071 potB; spermidine/putrescine transport system permease protein D CfP315_0489 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D CfP315_0751 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D CfP315_0753 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D CfP315_0752 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D CfP315_0150 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CfP315_0149 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D CfP315_0148 phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D CfP315_0044 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CfP315_0503 ABC transporter permease subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D CfP315_0169 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D CfP315_0873 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D CfP315_0872 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D CfP315_0871 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D CfP315_0630 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D CfP315_0233 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D CfP315_0179 zinc ABC transporter permease K09816 znuB; zinc transport system permease protein D CfP315_0232 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CfP315_0085 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D CfP315_0293 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CfP315_0847 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein D CfP315_0295 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CfP315_0529 bacitracin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CfP315_0763 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CfP315_0154 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D CfP315_0764 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D CfP315_0294 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CfP315_0511 PTS transporter subunit IIABC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CfP315_0358 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D CfP315_0699 magnesium transporter CorA family protein K03284 corA; magnesium transporter D CfP315_0521 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CfP315_0015 GerAB/ArcD/ProY family transporter K06296 gerKB; spore germination protein KB D CfP315_0327 sodium:proton antiporter K18218 tet35; tetracycline resistance efflux pump D CfP315_0273 polysaccharide biosynthesis C-terminal domain-containing protein K06409 spoVB; stage V sporulation protein B D CfP315_0634 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D CfP315_0635 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D CfP315_0909 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; cell division protein FtsW D CfP315_0125 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D CfP315_0249 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D CfP315_0250 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:ips02044] D CfP315_0523 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA D CfP315_0324 cytidine deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CfP315_0846 MBL fold metallo-hydrolase K02238 comEC; competence protein ComEC D CfP315_0047 ComF family protein K02242 comFC; competence protein ComFC D CfP315_0423 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CfP315_0804 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D CfP315_0144 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D CfP315_0115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D CfP315_0303 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CfP315_0505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CfP315_0323 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC C 02042 Bacterial toxins [BR:ips02042] D CfP315_0521 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CfP315_0670 hemolysin III family protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:ips02022] D CfP315_0474 response regulator transcription factor K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CfP315_0865 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A C 02035 Bacterial motility proteins C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:ips04812] D CfP315_0173 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ C 04147 Exosome [BR:ips04147] D CfP315_0091 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CfP315_0666 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CfP315_0255 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CfP315_0027 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D CfP315_0642 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CfP315_0842 elongation factor Tu K02358 tuf; elongation factor Tu D CfP315_0287 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CfP315_0116 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CfP315_0499 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:ips02048] D CfP315_0202 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CfP315_0209 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D CfP315_0940 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D CfP315_0173 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CfP315_0500 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CfP315_0412 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CfP315_0882 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:ips01504] D CfP315_0327 sodium:proton antiporter K18218 tet35; tetracycline resistance efflux pump C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ips00537] D CfP315_0666 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D CfP315_0692 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D CfP315_0021 anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D CfP315_0564 HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D CfP315_0677 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CfP315_0800 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CfP315_0668 cation-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CfP315_0930 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CfP315_0244 HAD-IC family P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] C 99981 Carbohydrate metabolism D CfP315_0726 DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D CfP315_0691 ferredoxin K05337 fer; ferredoxin D CfP315_0369 Fe-S cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism D CfP315_0023 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription C 99974 Translation D CfP315_0475 S1 RNA-binding domain-containing protein K07571 K07571; S1 RNA binding domain protein C 99975 Protein processing D CfP315_0088 trigger factor K03545 tig; trigger factor D CfP315_0291 SsrA-binding protein K03664 smpB; SsrA-binding protein D CfP315_0160 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D CfP315_0665 YraN family protein K07460 yraN; putative endonuclease D CfP315_0583 DNA-protecting protein DprA K04096 smf; DNA processing protein D CfP315_0320 AAA family ATPase K07478 ycaJ; putative ATPase C 99979 Viral proteins C 99998 Others D CfP315_0056 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D CfP315_0054 ATP/ADP translocase K03301 TC.AAA; ATP:ADP antiporter, AAA family D CfP315_0310 ATP/ADP translocase K03301 TC.AAA; ATP:ADP antiporter, AAA family C 99978 Cell growth D CfP315_0482 spore maturation protein A K06373 spmA; spore maturation protein A D CfP315_0481 spore maturation protein B K06374 spmB; spore maturation protein B D CfP315_0020 anti-sigma factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D CfP315_0171 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D CfP315_0199 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D CfP315_0509 spoIIIAH-like protein K06397 spoIIIAH; stage III sporulation protein AH D CfP315_0877 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D CfP315_0827 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D CfP315_0527 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D CfP315_0464 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D CfP315_0892 dipicolinate synthase subunit DpsA K06410 spoVFA; dipicolinate synthase subunit A D CfP315_0893 dipicolinate synthase subunit B K06411 spoVFB; dipicolinate synthase subunit B D CfP315_0350 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D CfP315_0014 spore germination protein K06295 gerKA; spore germination protein KA C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others D CfP315_0133 phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein B B 09194 Poorly characterized C 99996 General function prediction only D CfP315_0139 phosphatase K04477 ycdX; putative hydrolase C 99997 Function unknown D CfP315_0535 thioether cross-link-forming SCIFF peptide maturase K06871 K06871; uncharacterized protein D CfP315_0705 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D CfP315_0721 phage tail sheath subtilisin-like domain-containing protein K06907 FI; Bacteriophage tail sheath protein D CfP315_0246 zinc metallopeptidase K06973 K06973; uncharacterized protein D CfP315_0906 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D CfP315_0087 metallophosphoesterase K07099 K07099; uncharacterized protein D CfP315_0498 DUF2156 domain-containing protein K01163 K01163; uncharacterized protein D CfP315_0559 hypothetical protein K01163 K01163; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2024