+E Ribosome biogenesis KO
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Ribosome Biogenesis - Jannaschia sp. CCS1
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Jann_0522 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Jann_0524 GTP-binding protein Era K03595 era; GTPase
C Jann_2283 Small GTP-binding protein domain K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Jann_2681 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C Jann_0040 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C Jann_3412 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C Jann_0560 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Jann_1809 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Jann_4040 Fmu (Sun) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Jann_1983 Fmu (Sun) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Jann_3884 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Jann_0441 conserved hypothetical protein 95 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Jann_3912 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Jann_0201 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Jann_2769 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Jann_0899 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Jann_2801 RNA methyltransferase TrmH group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Jann_1981 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Jann_0378 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Jann_2689 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Jann_0269 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Jann_0086 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Jann_4024 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Jann_1217 Pseudouridine synthase Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Jann_0624 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Jann_3401 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Jann_1685 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C Jann_0862 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Jann_3147 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C Jann_0748 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Jann_1015 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Jann_2261 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C Jann_0961 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C Jann_0522 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Jann_2539 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
C Jann_2181 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C Jann_1574 DEAD/DEAH box helicase-like protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C Jann_0524 GTP-binding protein Era K03595 era; GTPase
C Jann_3872 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Jann_2169 Small GTP-binding protein domain K03977 engA; GTPase
C Jann_2283 Small GTP-binding protein domain K03979 obgE; GTPase [EC:3.6.5.-]
C Jann_2245 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C Jann_3895 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Jann_0514 (p)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Jann_4036 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Jann_0041 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C Jann_0377 Iojap-related protein K09710 ybeB; ribosome-associated protein
C Jann_0703 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
C Jann_0224 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
C Jann_3582 hypothetical protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024