+E
#
Transcription Machinery - Janthinobacterium sp. 1_2014MBL_MicDiv
%
!
AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E YQ44_17060 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E YQ44_24845 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E YQ44_25170 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E YQ44_25165 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E YQ44_04830 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E YQ44_18025 RNA polymerase sigma 70 K03086 rpoD; RNA polymerase primary sigma factor
E YQ44_03205 RNA polymerase sigma 70 K03086 rpoD; RNA polymerase primary sigma factor
E YQ44_06500 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E YQ44_07905 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E YQ44_22895 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E YQ44_07030 RNA polymerase factor sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E YQ44_26980 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E YQ44_04325 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E YQ44_02375 RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_24635 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_03810 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_13745 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_15765 RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_13605 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_02880 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_11180 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_09075 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E YQ44_22645 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
E YQ44_24530 RNA polymerase subunit sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E YQ44_15175 flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
E YQ44_04565 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E YQ44_21485 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
E YQ44_18875 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
E YQ44_25195 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E YQ44_25565 glutathione S-transferase K03599 sspA; stringent starvation protein A
E YQ44_25570 peptidase K03600 sspB; stringent starvation protein B
E YQ44_10880 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E YQ44_10885 anti-sigma factor antagonist K17762 rsbS; rsbT antagonist protein RsbS
E YQ44_10890 anti-sigma factor antagonist K17763 rsbR; rsbT co-antagonist protein RsbR
E YQ44_13385 sigma factor sigB regulation protein rsbQ K19707 rsbQ; sigma-B regulation protein RsbQ
E YQ44_07910 sigma factor RpoE negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D Transcription elongation factors
E YQ44_18230 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
E YQ44_25390 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
E YQ44_15900 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E YQ44_04820 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E YQ44_01660 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024