+F Repair protein KO #

  DNA Repair and Recombination Proteins - Klebsiella michiganensis E718

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D A225_3235 Methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A225_1728 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E A225_4429 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A225_4991 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A225_3276 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E A225_NDM1p0140 Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D A225_0903 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A225_1517 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A225_5661 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D A225_3235 Methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A225_4119 ADA regulatory protein / Methylated-DNA-protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D A225_1728 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D A225_4118 Alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E A225_4429 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A225_5080 G:T/U mismatch-specific uracil/thymine DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E A225_3904 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E A225_4991 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A225_5574 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E A225_5656 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E A225_1737 Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E A225_3276 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E A225_NDM1p0140 Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E A225_2483 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E A225_4056 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E A225_0256 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E A225_4914 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E A225_4273 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E A225_5669 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E A225_0001 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E A225_0334 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E A225_1816 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E A225_3718 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E A225_2492 Excinuclease cho (excinuclease ABC alternative C subunit) K05984 cho; excinuclease Cho [EC:3.1.25.-] E A225_0185 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A225_0001 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E A225_4273 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E A225_5669 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F A225_0241 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F A225_0242 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F A225_5312 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F A225_5671 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F A225_2333 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E A225_4647 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E A225_0439 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E A225_4792 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E A225_3831 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E A225_4359 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E A225_1253 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E A225_3656 Exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E A225_1014 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E A225_5787 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E A225_0541 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E A225_1670 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E A225_2317 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E A225_1048 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A225_1335 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E A225_0757 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E A225_NDM1p0210 DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E A225_3655 DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E A225_4273 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E A225_5669 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E A225_0185 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A225_0335 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A225_1451 putative single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A225_5380 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E A225_3784 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E A225_3737 Very-short-patch mismatch repair endonuclease (G-T specific) K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E A225_4779 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E A225_4781 Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E A225_4778 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E A225_4557 RecA protein K03553 recA; recombination protein RecA E A225_3678 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A225_3677 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E A225_3679 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E A225_0097 Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E A225_1332 Primosomal replication protein N prime prime K04067 priC; primosomal replication protein N'' E A225_0741 Primosomal protein I K02317 dnaT; DNA replication protein DnaT E A225_3831 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E A225_1218 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E A225_1219 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E A225_4557 RecA protein K03553 recA; recombination protein RecA E A225_0774 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E A225_5786 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E A225_5674 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A225_5705 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A225_4914 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E A225_4415 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E A225_1337 Recombination protein RecR K06187 recR; recombination protein RecR E A225_4467 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E A225_1215 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E A225_3678 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A225_3677 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E A225_3679 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E A225_4677 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E A225_4082 DNA or RNA helicase of superfamily II K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E A225_1218 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E A225_1219 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E A225_0546 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F A225_4125 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F A225_5785 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F A225_2537 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F A225_0258 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F A225_1283 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F A225_4914 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F A225_4415 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F A225_1337 Recombination protein RecR K06187 recR; recombination protein RecR F A225_4273 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F A225_5669 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F A225_5284 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F A225_3460 Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F A225_2041 Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F A225_3831 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F A225_0190 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F A225_0334 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F A225_1816 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F A225_3493 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F A225_R1p0120 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D A225_1064 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D A225_2416 Error-prone K03502 umuC; DNA polymerase V D A225_2685 Error-prone K03502 umuC; DNA polymerase V D A225_NDM1p0120 UmuC K03502 umuC; DNA polymerase V D A225_R1p0650 UmuC K03502 umuC; DNA polymerase V D A225_2415 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D A225_2684 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D A225_R1p1010 UV protection protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D A225_NDM1p0085 UmnD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D A225_4557 RecA protein K03553 recA; recombination protein RecA D A225_0317 SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D A225_2383 SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D A225_4467 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D A225_0335 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A225_1451 putative single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A225_2290 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D A225_1898 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D A225_4556 Regulatory protein RecX K03565 recX; regulatory protein D A225_5736 Uncharacterized protein YfaD K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] D A225_0982 hypothetical protein K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-] B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D A225_0145 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D A225_2085 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D A225_1843 ATP-dependent helicase DinG/Rad3 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D A225_3605 DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D A225_0903 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A225_1517 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A225_5661 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D A225_4532 Ribonucleotide reductase of class Ib K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A225_4127 Ribonucleotide reductase of class Ia K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A225_4128 Ribonucleotide reductase of class Ia K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D A225_4533 Ribonucleotide reductase of class Ib K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024