+E Transcription factors KO
#
Transcription Factors - Klebsiella michiganensis M1
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D HR38_22515 DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D HR38_29735 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D HR38_07760 transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D HR38_09500 transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D HR38_13390 DNA-binding protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D HR38_08745 4-hydroxyphenylacetate catabolism regulator HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D HR38_05760 transcriptional regulator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D HR38_05755 AraC family transcriptional regulator K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D HR38_16500 transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D HR38_25100 transcriptional regulator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D HR38_18945 AraC family transcriptional regulator K05372 ybtA; AraC family transcriptional regulator
D HR38_07065 transcriptional regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D HR38_19605 transcriptional regulator K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D HR38_17645 AraC family transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D HR38_09110 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D HR38_07040 AraC family transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D HR38_12390 transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D HR38_14955 transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D HR38_17530 transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D HR38_08935 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D HR38_16220 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D HR38_27570 hypothetical protein K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator
D HR38_01515 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D HR38_18010 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D HR38_24225 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D HR38_19665 ftrA; transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D HR38_13850 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D HR38_26405 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D HR38_27860 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D HR38_27430 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D HR38_29635 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D HR38_06050 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D HR38_06350 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D HR38_09250 nhaR; transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D HR38_05935 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D HR38_00905 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D HR38_09590 leuO; transcriptional regulator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D HR38_15215 leuO; transcriptional regulator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D HR38_24840 transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D HR38_16695 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D HR38_04950 transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D HR38_13170 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D HR38_19980 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D HR38_20080 transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D HR38_15430 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D HR38_17300 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D HR38_12205 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D HR38_16990 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D HR38_21675 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D HR38_02585 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D HR38_28605 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D HR38_05870 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D HR38_06010 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D HR38_14120 DeoR faimly transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D HR38_03265 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D HR38_17370 DeoR faimly transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D HR38_02045 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D HR38_13210 DeoR faimly transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D HR38_00445 alkaline phosphatase K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D HR38_02590 transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D HR38_27415 transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D HR38_05880 alkaline phosphatase K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D HR38_00430 alkaline phosphatase K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D HR38_26705 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D HR38_07625 transcriptional repressor UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D HR38_11680 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D HR38_29285 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D HR38_28785 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D HR38_19710 LacI family transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D HR38_22915 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_10650 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_12055 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_04140 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_00115 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_18685 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_19010 cytochrome C peroxidase K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_05305 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_23875 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_05585 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_05680 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D HR38_04020 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D HR38_05830 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D HR38_23545 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D HR38_09605 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D HR38_12105 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D HR38_08335 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D HR38_07980 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D HR38_26745 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D HR38_20440 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D HR38_18240 GntR family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D HR38_03325 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D HR38_11130 transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D HR38_01810 transcriptional regulator K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D HR38_20215 transcriptional regulator K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D HR38_04990 GntR family transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D HR38_22870 GntR family transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D HR38_13990 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D HR38_07255 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D HR38_10675 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D HR38_13690 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D HR38_27800 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D HR38_16940 GntR family transcriptional regulator K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D HR38_19120 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D HR38_14880 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D HR38_21810 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D HR38_09770 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D HR38_29575 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D HR38_26960 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D HR38_00125 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D HR38_10610 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D HR38_01950 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D HR38_04280 transcriptional regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D HR38_05040 galactonate operon transcriptional repressor K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D HR38_02450 transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D HR38_03450 decarboxylase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D HR38_12490 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D HR38_06260 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D HR38_26500 DeoR faimly transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D HR38_11700 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D HR38_13640 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D HR38_19795 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D HR38_08845 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D HR38_14950 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D HR38_12565 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D HR38_11735 transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D HR38_04450 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D HR38_15530 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D HR38_20395 transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D HR38_14970 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D HR38_18635 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D HR38_01315 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D HR38_00685 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D HR38_02695 transcriptional regulator K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D HR38_15925 TetR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D HR38_05945 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D HR38_13845 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D HR38_14145 DeoR faimly transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D HR38_05255 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D HR38_23415 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D HR38_14415 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D HR38_11550 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D HR38_22435 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D HR38_23400 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D HR38_10900 LuxR family transcriptional regulator K21963 ecpR; LuxR family transcriptional regulator, Mat/Ecp fimbriae transcriptional regulator
D HR38_22475 rcsA; capsule biosynthesis protein CapA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D HR38_01055 XRE family transcriptional regulator K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D HR38_08950 XRE family transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D HR38_03260 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D HR38_19600 transcriptional regulator K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D HR38_17850 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D HR38_20360 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D HR38_08610 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D HR38_26555 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D HR38_27110 transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
C MerR family
D HR38_29525 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D HR38_29550 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D HR38_11860 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D HR38_02805 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D HR38_07070 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D HR38_17275 MerR family transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D HR38_23710 MerR family transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D HR38_13665 transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D HR38_13175 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D HR38_06955 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D HR38_06735 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D HR38_11440 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D HR38_20070 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D HR38_20995 transcriptional regulator K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D HR38_03385 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D HR38_22015 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D HR38_04165 transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D HR38_06070 CarD family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D HR38_03085 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D HR38_20115 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D HR38_25525 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D HR38_07585 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D HR38_17660 transcriptional regulator K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D HR38_28510 arsenic resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D HR38_28675 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D HR38_00540 arsenic resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D HR38_18020 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D HR38_13970 manganese transport regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D HR38_07190 transcriptional regulator K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D HR38_07950 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D HR38_22170 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D HR38_06495 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D HR38_02690 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D HR38_09095 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D HR38_03645 propanediol utilization protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D HR38_02300 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D HR38_09525 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D HR38_09080 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D HR38_15445 transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D HR38_01310 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D HR38_29950 DNA-binding protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D HR38_28480 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D HR38_00780 transcriptional regulator K17473 dgaR; sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
D HR38_08860 sigma-54 dependent transcriptional regulator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D HR38_05505 PTS sugar transporter subunit IIA K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D HR38_26450 ATPase AAA K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D HR38_26715 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D HR38_26830 transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D HR38_23085 ATPase AAA K02584 nifA; Nif-specific regulatory protein
D HR38_10145 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D HR38_13600 transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D HR38_04055 transcriptional regulator K07726 K07726; putative transcriptional regulator
D HR38_18260 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D HR38_03610 nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D HR38_05850 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D HR38_15540 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D HR38_29400 bifunctional antitoxin/transcriptional repressor RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D HR38_12090 antitermination protein BlgG K03488 licT; beta-glucoside operon transcriptional antiterminator
D HR38_23800 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D HR38_01385 hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D HR38_01330 regulator protein FrmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D HR38_17920 hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D HR38_11630 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D HR38_11485 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D HR38_30145 plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D HR38_28825 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D HR38_28915 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D HR38_28220 plasmid-partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D HR38_28095 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D HR38_19285 transcriptional antiterminator K02443 glpP; glycerol uptake operon antiterminator
D HR38_06415 rfaH; transcriptional regulator K05785 rfaH; transcriptional antiterminator RfaH
D HR38_02550 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D HR38_13120 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D HR38_19880 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D HR38_04260 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor
D HR38_18990 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D HR38_18670 thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D HR38_16860 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D HR38_12010 transcriptional regulator K03765 cadC; transcriptional activator of cad operon
D HR38_25260 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D HR38_17805 phenylacetic acid degradation protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D HR38_16820 pspF; phage shock protein K03974 pspF; psp operon transcriptional activator
D HR38_16835 transcriptional regulator K03973 pspC; phage shock protein C
D HR38_01875 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor
D HR38_29225 transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon
D HR38_01755 transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon
D HR38_12895 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D HR38_22795 DNA-binding protein K07733 alpA; prophage regulatory protein
D HR38_08210 hypothetical protein K07733 alpA; prophage regulatory protein
D HR38_11980 transcriptional regulator K07734 paiB; transcriptional regulator
D HR38_01045 hypothetical protein K07735 algH; putative transcriptional regulator
D HR38_09965 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D HR38_11325 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D HR38_10525 hypothetical protein K11926 crl; sigma factor-binding protein Crl
D HR38_06820 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR
D HR38_29890 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D HR38_09610 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0