+E Ribosome biogenesis KO
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Ribosome Biogenesis - Kordia sp. SMS9
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D KORDIASMS9_00992 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C KORDIASMS9_00304 era; GTPase Era K03595 era; GTPase
C KORDIASMS9_00123 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C KORDIASMS9_01704 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
C KORDIASMS9_03833 hypothetical protein K03625 nusB; transcription antitermination protein NusB
C KORDIASMS9_02362 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D KORDIASMS9_01598 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D KORDIASMS9_04102 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D KORDIASMS9_02619 rsmD; ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D KORDIASMS9_04175 rsmE; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D KORDIASMS9_02141 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D KORDIASMS9_02020 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D KORDIASMS9_03169 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D KORDIASMS9_01045 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D KORDIASMS9_00087 putative TrmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D KORDIASMS9_02325 rlmF; ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D KORDIASMS9_03987 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D KORDIASMS9_02785 rlmI; ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D KORDIASMS9_04388 rlmL; ribosomal RNA large subunit methyltransferase L K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D KORDIASMS9_02002 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D KORDIASMS9_04381 rlmCD; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D KORDIASMS9_00586 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D KORDIASMS9_02313 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D KORDIASMS9_02425 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D KORDIASMS9_02904 truC; tRNA pseudouridine synthase C K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D KORDIASMS9_04167 truC; tRNA pseudouridine synthase C K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D KORDIASMS9_00594 rluF; 23S rRNA pseudouridine(2604) synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C KORDIASMS9_01554 rimK; ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C KORDIASMS9_01860 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C KORDIASMS9_02481 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C KORDIASMS9_04548 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C KORDIASMS9_00992 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C KORDIASMS9_00698 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C KORDIASMS9_02562 yrrK; putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C KORDIASMS9_03511 dbpA; ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C KORDIASMS9_03989 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C KORDIASMS9_00304 era; GTPase Era K03595 era; GTPase
C KORDIASMS9_00245 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C KORDIASMS9_00302 der; GTPase Der K03977 engA; GTPase
C KORDIASMS9_00123 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C KORDIASMS9_01501 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C KORDIASMS9_02539 ywlC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C KORDIASMS9_02595 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C KORDIASMS9_01092 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C KORDIASMS9_01703 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C KORDIASMS9_02301 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C KORDIASMS9_01139 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C KORDIASMS9_02354 yvyD; ribosome hibernation promotion factor K05808 hpf; ribosome hibernation promoting factor
C KORDIASMS9_03002 ribosome hibernation promoting factor HPF K05809 raiA; ribosome-associated inhibitor A
C KORDIASMS9_03689 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C KORDIASMS9_01070 putative ACR K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024