+F Repair protein KO #

  DNA Repair and Recombination Proteins - Klebsiella pneumoniae 30660/NJST258_1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D KPNJ1_02955 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E KPNJ1_01375 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E KPNJ1_00836 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E KPNJ1_02499 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D KPNJ1_04631 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D KPNJ1_00136 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D KPNJ1_02955 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D KPNJ1_01718 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D KPNJ1_00123 O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D KPNJ1_01719 Alkylated DNA repair protein alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E KPNJ1_01375 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E KPNJ1_00686 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E KPNJ1_01844 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E KPNJ1_00836 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E KPNJ1_00216 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E KPNJ1_00141 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E KPNJ1_03855 Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E KPNJ1_02499 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E KPNJ1_03290 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E KPNJ1_01758 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E KPNJ1_05217 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E KPNJ1_00914 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E KPNJ1_05432 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E KPNJ1_05144 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E KPNJ1_03782 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E KPNJ1_02007 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E KPNJ1_03282 UV-repair endonuclease Cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E KPNJ1_05284 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E KPNJ1_05432 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F KPNJ1_05233 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F KPNJ1_05232 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F KPNJ1_00444 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F KPNJ1_00117 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F KPNJ1_03412 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E KPNJ1_01148 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E KPNJ1_05063 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E KPNJ1_01003 DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E KPNJ1_01906 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E KPNJ1_01444 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E KPNJ1_04320 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E KPNJ1_02061 Exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E KPNJ1_04523 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E KPNJ1_00002 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E KPNJ1_04950 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E KPNJ1_03906 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E KPNJ1_03429 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E KPNJ1_04489 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E KPNJ1_04237 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E KPNJ1_04777 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E KPNJ1_05702 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E KPNJ1_02062 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E KPNJ1_05284 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E KPNJ1_05143 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E KPNJ1_05700 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E KPNJ1_00378 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E KPNJ1_01295 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E KPNJ1_03685 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E KPNJ1_01988 Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E KPNJ1_01015 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E KPNJ1_01013 Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E KPNJ1_01016 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E KPNJ1_01215 RecA protein K03553 recA; recombination protein RecA E KPNJ1_02044 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E KPNJ1_02045 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E KPNJ1_02043 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E KPNJ1_05366 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E KPNJ1_05034 Primosomal replication protein N K02686 priB; primosomal replication protein N E KPNJ1_04240 Primosomal replication protein N' K04067 priC; primosomal replication protein N'' E KPNJ1_04792 Primosomal protein I K02317 dnaT; DNA replication protein DnaT E KPNJ1_01459 Hypothetical protein K02317 dnaT; DNA replication protein DnaT E KPNJ1_01906 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E KPNJ1_04362 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E KPNJ1_04361 Exonuclease sbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E KPNJ1_01215 RecA protein K03553 recA; recombination protein RecA E KPNJ1_04760 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E KPNJ1_00003 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E KPNJ1_00114 ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E KPNJ1_00914 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E KPNJ1_01390 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E KPNJ1_04235 Recombination protein recR K06187 recR; recombination protein RecR E KPNJ1_01340 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E KPNJ1_04364 Recombination associated protein rdgC K03554 rdgC; recombination associated protein RdgC E KPNJ1_02044 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E KPNJ1_02045 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E KPNJ1_02043 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E KPNJ1_01735 DNA/RNA helicase (DEAD/DEAH box family) K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E KPNJ1_04362 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E KPNJ1_04361 Exonuclease sbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E KPNJ1_04945 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F KPNJ1_01709 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F KPNJ1_00004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F KPNJ1_03232 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F KPNJ1_05215 DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha F KPNJ1_04289 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F KPNJ1_01452 RecT protein K07455 recT; recombination protein RecT F KPNJ1_00914 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F KPNJ1_01390 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F KPNJ1_04235 Recombination protein recR K06187 recR; recombination protein RecR F KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F KPNJ1_00487 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F KPNJ1_02278 Integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F KPNJ1_03584 Integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F KPNJ1_01906 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F KPNJ1_05279 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F KPNJ1_05144 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F KPNJ1_03782 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F KPNJ1_02245 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F KPNJ1_01937 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D KPNJ1_04474 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D KPNJ1_03338 DNA polymerase V subunit K03502 umuC; DNA polymerase V D KPNJ1_05715 DNA polymerase V subunit K03502 umuC; DNA polymerase V D KPNJ1_04132 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] D KPNJ1_03339 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] D KPNJ1_05714 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D KPNJ1_01215 RecA protein K03553 recA; recombination protein RecA D KPNJ1_05161 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D KPNJ1_01340 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D KPNJ1_04682 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D KPNJ1_05143 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D KPNJ1_05700 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D KPNJ1_00017 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D KPNJ1_03453 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D KPNJ1_03107 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D KPNJ1_01298 SOS operon TUM protein K12149 dinI; DNA-damage-inducible protein I D KPNJ1_01216 Regulatory protein recX K03565 recX; regulatory protein D KPNJ1_04841 Putative YhgA-like transposase K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D KPNJ1_05318 ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D KPNJ1_03533 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D KPNJ1_03751 ATP-dependent helicase, DinG family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D KPNJ1_02102 ATP-dependent helicase, DinG family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D KPNJ1_05504 ATP-dependent RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D KPNJ1_04631 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D KPNJ1_00136 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D KPNJ1_01707 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D KPNJ1_01237 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D KPNJ1_01706 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D KPNJ1_01236 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024