+F Repair protein KO
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DNA Repair and Recombination Proteins - Klebsiella pneumoniae 30660/NJST258_1
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D KPNJ1_02955 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E KPNJ1_01375 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E KPNJ1_00836 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E KPNJ1_02499 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D KPNJ1_04631 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D KPNJ1_00136 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D KPNJ1_02955 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D KPNJ1_01718 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D KPNJ1_00123 O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D KPNJ1_01719 Alkylated DNA repair protein alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E KPNJ1_01375 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E KPNJ1_00686 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E KPNJ1_01844 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E KPNJ1_00836 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E KPNJ1_00216 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E KPNJ1_00141 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E KPNJ1_03855 Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E KPNJ1_02499 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E KPNJ1_03290 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E KPNJ1_01758 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E KPNJ1_05217 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E KPNJ1_00914 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E KPNJ1_05432 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E KPNJ1_05144 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E KPNJ1_03782 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E KPNJ1_02007 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E KPNJ1_03282 UV-repair endonuclease Cho K05984 cho; excinuclease Cho [EC:3.1.25.-]
E KPNJ1_05284 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E KPNJ1_05432 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F KPNJ1_05233 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F KPNJ1_05232 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F KPNJ1_00444 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F KPNJ1_00117 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F KPNJ1_03412 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E KPNJ1_01148 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E KPNJ1_05063 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E KPNJ1_01003 DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E KPNJ1_01906 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E KPNJ1_01444 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E KPNJ1_04320 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E KPNJ1_02061 Exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E KPNJ1_04523 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E KPNJ1_00002 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E KPNJ1_04950 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E KPNJ1_03906 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E KPNJ1_03429 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E KPNJ1_04489 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E KPNJ1_04237 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E KPNJ1_04777 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E KPNJ1_05702 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
E KPNJ1_02062 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E KPNJ1_05284 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E KPNJ1_05143 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E KPNJ1_05700 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E KPNJ1_00378 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E KPNJ1_01295 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E KPNJ1_03685 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E KPNJ1_01988 Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E KPNJ1_01015 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E KPNJ1_01013 Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E KPNJ1_01016 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E KPNJ1_01215 RecA protein K03553 recA; recombination protein RecA
E KPNJ1_02044 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E KPNJ1_02045 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E KPNJ1_02043 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E KPNJ1_05366 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E KPNJ1_05034 Primosomal replication protein N K02686 priB; primosomal replication protein N
E KPNJ1_04240 Primosomal replication protein N' K04067 priC; primosomal replication protein N''
E KPNJ1_04792 Primosomal protein I K02317 dnaT; DNA replication protein DnaT
E KPNJ1_01459 Hypothetical protein K02317 dnaT; DNA replication protein DnaT
E KPNJ1_01906 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E KPNJ1_04362 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E KPNJ1_04361 Exonuclease sbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E KPNJ1_01215 RecA protein K03553 recA; recombination protein RecA
E KPNJ1_04760 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E KPNJ1_00003 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E KPNJ1_00114 ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E KPNJ1_00914 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E KPNJ1_01390 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E KPNJ1_04235 Recombination protein recR K06187 recR; recombination protein RecR
E KPNJ1_01340 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E KPNJ1_04364 Recombination associated protein rdgC K03554 rdgC; recombination associated protein RdgC
E KPNJ1_02044 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E KPNJ1_02045 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E KPNJ1_02043 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E KPNJ1_01735 DNA/RNA helicase (DEAD/DEAH box family) K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E KPNJ1_04362 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E KPNJ1_04361 Exonuclease sbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E KPNJ1_04945 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F KPNJ1_01709 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F KPNJ1_00004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F KPNJ1_03232 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F KPNJ1_05215 DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
F KPNJ1_04289 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F KPNJ1_01452 RecT protein K07455 recT; recombination protein RecT
F KPNJ1_00914 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F KPNJ1_01390 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F KPNJ1_04235 Recombination protein recR K06187 recR; recombination protein RecR
F KPNJ1_01582 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F KPNJ1_00119 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F KPNJ1_00487 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F KPNJ1_02278 Integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
F KPNJ1_03584 Integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F KPNJ1_01906 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F KPNJ1_05279 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F KPNJ1_05144 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F KPNJ1_03782 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F KPNJ1_02245 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
F KPNJ1_01937 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D KPNJ1_04474 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D KPNJ1_03338 DNA polymerase V subunit K03502 umuC; DNA polymerase V
D KPNJ1_05715 DNA polymerase V subunit K03502 umuC; DNA polymerase V
D KPNJ1_04132 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D KPNJ1_03339 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D KPNJ1_05714 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D KPNJ1_01215 RecA protein K03553 recA; recombination protein RecA
D KPNJ1_05161 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D KPNJ1_01340 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D KPNJ1_04682 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D KPNJ1_05143 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D KPNJ1_05700 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D KPNJ1_00017 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D
D KPNJ1_03453 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D KPNJ1_03107 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D KPNJ1_01298 SOS operon TUM protein K12149 dinI; DNA-damage-inducible protein I
D KPNJ1_01216 Regulatory protein recX K03565 recX; regulatory protein
D KPNJ1_04841 Putative YhgA-like transposase K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D KPNJ1_05318 ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D KPNJ1_03533 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D KPNJ1_03751 ATP-dependent helicase, DinG family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D KPNJ1_02102 ATP-dependent helicase, DinG family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D KPNJ1_05504 ATP-dependent RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D KPNJ1_04631 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D KPNJ1_00136 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D KPNJ1_01707 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D KPNJ1_01237 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D KPNJ1_01706 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D KPNJ1_01236 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024