+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Klebsiella pneumoniae subsp. rhinoscleromatis SB3432

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D KPR_1381 rnc; highly similar to ribonuclease 3 from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCI1) K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D KPR_0538 orn; highly similar to Oligoribonuclease from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TH79) K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C KPR_1382 era; highly similar to GTP-binding protein Era homolog from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCI0) K03595 era; GTPase C KPR_4786 obg; highly similar to GTPase Obg from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TEK2) K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C KPR_3421 unnamed protein product; highly similar to putative transcriptional regulator from Escherichia coli (tr|C0J1H7) K06204 dksA; RNA polymerase-binding transcription factor C KPR_1075 dksA; highly similar to DnaK suppressor protein from Escherichia coli strain UTI89 - UPEC (tr|Q1RG45) K06204 dksA; RNA polymerase-binding transcription factor C KPR_4772 nusA; highly similar to transcription elongation protein from Escherichia coli O44:H18 strain 042 - EAEC (tr|D3GXR0) K02600 nusA; transcription termination/antitermination protein NusA C KPR_4353 nusB; highly similar to N utilization substance protein B homolog from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T5E9) K03625 nusB; transcription antitermination protein NusB B rRNA modification factors C 16S rRNA modification factors D KPR_1474 unnamed protein product; highly similar to pseudouridine synthase from Escherichia coli O6:K15:H31 strain 536 - UPEC (tr|Q0TFQ6) K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D KPR_0972 rsmA; highly similar to ribosomal RNA small subunit methyltransferase A from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T4I7) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D KPR_4870 rsmB; highly similar to ribosomal RNA small subunit methyltransferase B from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TEU2) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D KPR_0905 rsmC; highly similar to ribosomal RNA small subunit methyltransferase C from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6THY6) K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D KPR_5086 unnamed protein product; highly similar to predicted methyltransferase from Escherichia coli O111:H-strain 11128 - EHEC (tr|C8UHU5) K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D KPR_4649 unnamed protein product; highly similar to putative uncharacterized protein ECs3822 from Escherichia coli O157:H7 (tr|Q8XCW3) K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D KPR_3262 rsmF; highly similar to ribosomal RNA small subunit methyltransferase F from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TB06) K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D KPR_0104 rsmG; highly similar to ribosomal RNA small subunit methyltransferase G from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TG44) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D KPR_1014 rsmH; highly similar to ribosomal RNA small subunit methyltransferase H from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T4M5) K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D KPR_4748 rsmI; highly similar to ribosomal RNA small subunit methyltransferase I from Escherichia coli 3030-1 (tr|G1ZP72) K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D KPR_5054 unnamed protein product; highly similar to UPF0341 protein KPN78578_38250 from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TFB5) K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D KPR_3250 rlmA; highly similar to ribosomal RNA large subunit methyltransferase A from Escherichia coli strain K12 (sp|P36999) K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D KPR_0555 rlmB; highly similar to hypothetical tRNA/rRNA methyltransferase YjfH from Escherichia coli O6:K15:H31 (tr|Q0T9L3) K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D KPR_4782 rlmE; highly similar to ribosomal RNA large subunit methyltransferase E from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TEJ8) K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D KPR_3751 rlmF; highly similar to ribosomal RNA large subunit methyltransferase F from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T6Q1) K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D KPR_4715 rlmG; highly similar to ribosomal RNA large subunit methyltransferase G from Klebsiella pneumoniae strain 342 (sp|B5XTX7) K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D KPR_3907 rlmH; highly similar to ribosomal RNA large subunit methyltransferase H from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T697) K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D KPR_3522 rlmI; highly similar to ribosomal RNA large subunit methyltransferase I from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T766) K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D KPR_5050 yhiR; highly similar to putative DNA (exogenous) processing protein from Escherichia coli O7:K1 strain IAI39 - ExPEC (tr|B7NNC1) K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D KPR_1661 rlmL; highly similar to ribosomal RNA large subunit methyltransferase L from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T742) K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D KPR_4171 rlmM; highly similar to ribosomal RNA large subunit methyltransferase M from Klebsiella pneumoniae strain 342 (sp|B5XUY0) K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D KPR_1429 rlmN; highly similar to ribosomal RNA large subunit methyltransferase N from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCD6) K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D KPR_4136 rlmD; highly similar to 23S rRNA (uracil-5-)-methyltransferase RumA from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TD57) K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D KPR_3692 rlmC; highly similar to 23S rRNA (uracil-5-)-methyltransferase RumB from Citrobacter koseri (sp|A8AIQ7) K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D KPR_0981 rluA; highly similar to ribosomal large subunit pseudouridine synthase A from Shigella flexneri (sp|P0AA38) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D KPR_3187 unnamed protein product; highly similar to pseudouridine synthase from Yersinia bercovieri (tr|C4RYK9) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D KPR_2316 rluB; highly similar to ribosomal large subunit pseudouridine synthase B from Shigella flexneri (sp|P59815) K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D KPR_2130 rluC; highly similar to ribosomal large subunit pseudouridine synthase C from Salmonella typhimurium (sp|Q8ZQ16) K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D KPR_1356 rluD; highly similar to ribosomal large subunit pseudouridine synthase D from Salmonella typhimurium (sp|P65836) K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D KPR_2188 rluE; highly similar to ribosomal large subunit pseudouridine synthase E from Escherichia coli O6 (sp|Q8FIB6) K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D KPR_0392 rluF; highly similar to ribosomal large subunit pseudouridine synthase F from Shigella flexneri (sp|Q83IR6) K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D KPR_1369 yfiF; highly similar to hypothetical tRNA/rRNA methyltransferase YfiF from Escherichia coli O6:K15:H31 strain 536 - UPEC (tr|Q0TEQ7) K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C KPR_0907 rimI; highly similar to ribosomal-protein-alanine acetyltransferase from Escherichia coli strain ATCC 33849 - DSM 4235 - NCIB 12045 - K12 - DH1 (tr|C9QSU8) K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C KPR_2123 rimJ; highly similar to ribosomal-protein-alanine acetyltransferase from Escherichia coli O55:H7 strain CB9615 - EPEC (tr|D3QQ61) K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C KPR_3701 rimK; highly similar to ribosomal protein S6 modification protein from Klebsiella pneumoniae strain 342 (sp|B5XYN4) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C KPR_2979 unnamed protein product; similar to N-terminal region of ribosomal-protein-serine acetyltransferase from Escherichia coli O6 (tr|Q8FHM0) K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C KPR_1342 rimM; highly similar to ribosome maturation factor RimM from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCL6) K02860 rimM; 16S rRNA processing protein RimM C KPR_3718 rimO; highly similar to ribosomal protein S12 methylthiotransferase RimO from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T6T1) K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C KPR_3645 unnamed protein product; highly similar to putative uncharacterized protein from Escherichia coli E22 (tr|B3I7Y4) K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C KPR_4854 prmA; highly similar to ribosomal protein L11 methyltransferase from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TES6) K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C KPR_1986 yfcB; highly similar to uncharacterized adenine-specific methylase YfcB from Salmonella typhimurium (sp|P0A293) K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C KPR_2179 unnamed protein product; highly similar to putative uncharacterized protein ECs1573 from Escherichia coli O157:H7 (tr|Q8X776) K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] C KPR_0806 unnamed protein product; highly similar to Cupin family protein from Klebsiella pneumoniae strain 342 (tr|B5Y2J1) K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C KPR_1381 rnc; highly similar to ribonuclease 3 from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCI1) K03685 rnc; ribonuclease III [EC:3.1.26.3] C KPR_2129 rne; highly similar to ribonuclease E from Escherichia coli O157:H7 str. TW14588 (tr|B6ZZX1) K08300 rne; ribonuclease E [EC:3.1.26.12] C KPR_4841 rng; highly similar to ribonuclease G from Escherichia coli strain UTI89 - UPEC (tr|Q1R693) K08301 rng; ribonuclease G [EC:3.1.26.-] C KPR_4652 ruvX; highly similar to putative Holliday junction resolvase from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TDV8) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C KPR_2894 dbpA; highly similar to ATP-independent RNA helicase DbpA from Escherichia coli strain K12 (sp|P21693) K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C KPR_4765 deaD; highly similar to cold-shock DEAD box protein A from Klebsiella pneumoniae (sp|P33906) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C KPR_1372 srmB; highly similar to ATP-dependent RNA helicase SrmB from Escherichia coli O6 (tr|Q8FF13) K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C KPR_1382 era; highly similar to GTP-binding protein Era homolog from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCI0) K03595 era; GTPase C KPR_0537 rsgA; highly similar to putative ribosome biogenesis GTPase RsgA from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TH78) K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C KPR_1435 engA; highly similar to GTP-binding protein EngA from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TCD0) K03977 engA; GTPase C KPR_4786 obg; highly similar to GTPase Obg from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TEK2) K03979 obgE; GTPase [EC:3.6.5.-] C KPR_0547 hflX; highly similar to predicted HflX protein, putative GTP-binding protein from Salmonella enteritidis PT4 (tr|B5R0P0) K03665 hflX; GTPase B Other maturation factors C KPR_4864 rimN; highly similar to putative ribosome maturation factor RimN from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TET6) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C KPR_0359 spoT; highly similar to guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase from Escherichia coli O6 (tr|Q8CXX1) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C KPR_4770 rbfA; highly similar to ribosome-binding factor A from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TEI6) K02834 rbfA; ribosome-binding factor A C KPR_4773 rimP; highly similar to ribosome maturation factor RimP from Enterobacter sp. strain 638 (sp|A4WEY5) K09748 rimP; ribosome maturation factor RimP C KPR_4238 ybcJ; highly similar to putative uncharacterized protein ECs0590 from Escherichia coli O157:H7 (tr|Q8XCT7) K14761 rlbA; ribosome-associated protein C KPR_3906 ybeB; highly similar to putative uncharacterized protein YbeB from Escherichia coli strain UTI89 - UPEC (tr|Q1RES5) K09710 ybeB; ribosome-associated protein C KPR_3889 unnamed protein product; highly similar to putative metalloprotease KPN78578_06730 from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6T6B3) K07042 ybeY; probable rRNA maturation factor C KPR_4783 yhbY; highly similar to hypothetical RNA binding protein from Escherichia coli O6:K15:H31 strain 536 - UPEC (tr|Q0TCT0) K07574 yhbY; RNA-binding protein C KPR_4968 yibL; highly similar to putative uncharacterized protein YibL from Escherichia coli O55:H7 strain CB9615 - EPEC (tr|D3QV27) K14762 yibL; ribosome-associated protein C KPR_0605 yjgA; highly similar to putative uncharacterized protein YjgA from Escherichia coli strain B - REL606 (tr|C6UL12) K09889 yjgA; ribosome-associated protein C KPR_4805 unnamed protein product; highly similar to probable sigma(54) modulation protein from Klebsiella oxytoca (sp|P17161) K05808 hpf; ribosome hibernation promoting factor C KPR_1354 yhbH; highly similar to putative YhbH sigma 54 modulator from Escherichia coli strain UTI89 - UPEC (tr|Q1R8C7) K05809 raiA; ribosome-associated inhibitor A C KPR_2910 sra; similar to stationary-phase-induced ribosome-associated protein from Salmonella typhimurium (sp|Q7CQJ0) K02972 sra; stationary-phase-induced ribosome-associated protein C KPR_3164 engD; highly similar to GTP-dependent nucleic acid-binding protein EngD from Escherichia coli O55:H7 strain CB9615 - EPEC (tr|D3QQX6) K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024