+E Ribosome biogenesis KO
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Ribosome Biogenesis - Klebsiella pneumoniae 30684/NJST258_2
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D KPNJ2_01412 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D KPNJ2_05016 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C KPNJ2_01413 GTP-binding protein era K03595 era; GTPase
C KPNJ2_00596 GTP-binding protein CgtA (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C KPNJ2_04532 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C KPNJ2_00612 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C KPNJ2_04277 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C KPNJ2_00417 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D KPNJ2_01704 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D KPNJ2_04645 Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D KPNJ2_00490 16S rRNA m(5)C 967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D KPNJ2_04727 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D KPNJ2_00297 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D KPNJ2_00884 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D KPNJ2_02033 16S rRNA (cytosine(1407)-C(5))-methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D KPNJ2_05418 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D KPNJ2_04602 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D KPNJ2_00636 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D KPNJ2_00266 SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D KPNJ2_02051 23S rRNA m(1)G 745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D KPNJ2_04997 23S rRNA Gm2251 methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D KPNJ2_00601 23S rRNA Um2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D KPNJ2_03733 23S rRNA (adenine(1618)-N(6))-methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D KPNJ2_00690 23S rRNA (guanine(1835)-N(2))-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D KPNJ2_03900 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D KPNJ2_03518 23S rRNA (cytosine(1962)-C(5))-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D KPNJ2_00262 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D KPNJ2_03537 23S rRNA (guanine(2445)-N(2))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D KPNJ2_01103 23S rRNA (cytidine(2498)-2'-O)-methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D KPNJ2_01458 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D KPNJ2_01142 23S rRNA m(5)U 1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D KPNJ2_03624 23S rRNA m(5)U 747 methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D KPNJ2_02116 TRNA pseudouridine(32) synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D KPNJ2_04636 TRNA pseudouridine(32) synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D KPNJ2_03230 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D KPNJ2_03433 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D KPNJ2_01388 23S rRNA pseudouridine(1911/1915/1917) synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D KPNJ2_03380 Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D KPNJ2_05182 16S rRNA pseudouridine(516) synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D KPNJ2_01398 23S rRNA Gm2251 methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C KPNJ2_04725 Ribosomal-protein-S18-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C KPNJ2_03440 Ribosomal-protein-S5-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C KPNJ2_03631 Ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C KPNJ2_02485 Ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C KPNJ2_01373 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
C KPNJ2_03698 TRNA 2-methylthioadenosine synthase -like protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C KPNJ2_03578 Fatty acid binding protein YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C KPNJ2_00529 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C KPNJ2_01587 Ribosomal protein L3P methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C KPNJ2_03389 Putative cytosolic protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
C KPNJ2_04821 Putative cytosolic protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C KPNJ2_01412 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C KPNJ2_03434 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C KPNJ2_00543 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C KPNJ2_00881 Putative cytosolic protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C KPNJ2_03051 ATP-dependent RNA helicase dbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C KPNJ2_00620 ATP-dependent RNA helicase dbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C KPNJ2_01401 ATP-dependent RNA helicase srmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C KPNJ2_01413 GTP-binding protein era K03595 era; GTPase
C KPNJ2_05017 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C KPNJ2_01465 GTP-binding protein K03977 engA; GTPase
C KPNJ2_00596 GTP-binding protein CgtA (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-]
C KPNJ2_05006 GTP-binding protein hflX K03665 hflX; GTPase
B Other maturation factors
C KPNJ2_00496 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C KPNJ2_00117 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C KPNJ2_00614 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C KPNJ2_00611 Putative cytosolic protein K09748 rimP; ribosome maturation factor RimP
C KPNJ2_04155 Urease K14761 rlbA; ribosome-associated protein
C KPNJ2_03899 Iojap protein family protein K09710 ybeB; ribosome-associated protein
C KPNJ2_03879 Putative metal-binding protein K07042 ybeY; probable rRNA maturation factor
C KPNJ2_00600 Putative RNA binding protein K07574 yhbY; RNA-binding protein
C KPNJ2_00172 Hypothetical protein K14762 yibL; ribosome-associated protein
C KPNJ2_04942 Hypothetical protein K09889 yjgA; ribosome-associated protein
C KPNJ2_03532 Ribosome modulation factor K03812 rmf; ribosome modulation factor
C KPNJ2_00576 Ribosome-associated factor Y K05808 hpf; ribosome hibernation promoting factor
C KPNJ2_01386 Ribosome-associated factor Y K05809 raiA; ribosome-associated inhibitor A
C KPNJ2_02588 SSU ribosomal protein S22P K02972 sra; stationary-phase-induced ribosome-associated protein
C KPNJ2_02159 Putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
C KPNJ2_03431 Hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024