+F Repair protein KO #

  DNA Repair and Recombination Proteins - Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D VK055_0973 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D VK055_1811 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E VK055_4598 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VK055_4082 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E VK055_0508 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D VK055_2468 mutT; 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VK055_3489 dut; dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D VK055_0973 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D VK055_3476 methylated-DNA-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D VK055_4887 ada transcriptional dual regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D VK055_1811 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D VK055_4888 alkB repair system for alkylated DNA and RNA K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E VK055_4598 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VK055_3994 uracil DNA glycosylase superfamily protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E VK055_5007 3-methyl-adenine DNA glycosylase II, inducible K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E VK055_4082 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E VK055_3562 tag; 3-methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E VK055_3494 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E VK055_1803 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E VK055_0508 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E VK055_1238 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E VK055_4925 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E VK055_3094 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E VK055_4162 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E VK055_3473 ligB; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E VK055_4754 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E VK055_3301 polA; DNA polymerase I, 3' --5' polymerase, 5' --3' and 3' --5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E VK055_3026 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E VK055_1726 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E VK055_0033 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E VK055_1231 endonuclease of nucleotide excision repair K05984 cho; excinuclease Cho [EC:3.1.25.-] E VK055_3163 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E VK055_3301 polA; DNA polymerase I, 3' --5' polymerase, 5' --3' and 3' --5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] E VK055_3473 ligB; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E VK055_4754 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F VK055_3110 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F VK055_3109 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F VK055_3778 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F VK055_3471 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F VK055_1352 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E VK055_4422 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E VK055_2896 mutL; mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E VK055_4284 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E VK055_5051 exonuclease I, 3' --5' specific deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E VK055_4663 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E VK055_2180 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E VK055_0088 exonuclease family protein K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E VK055_2368 DNA polymerase III, &alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E VK055_3360 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E VK055_2795 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E VK055_1860 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E VK055_1368 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E VK055_2336 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VK055_2097 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E VK055_2603 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E VK055_0089 holE; DNA polymerase III, &theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E VK055_3473 ligB; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E VK055_4754 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E VK055_3163 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E VK055_3025 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein E VK055_1639 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E VK055_3712 dam3; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E VK055_5159 dam2; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E VK055_0018 DNA mismatch endonuclease of the very short patch (VSP) mismatch repair pathway K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E VK055_4296 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E VK055_4294 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E VK055_4297 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E VK055_4485 recA; protein RecA K03553 recA; recombination protein RecA E VK055_0071 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E VK055_0072 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E VK055_0070 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E VK055_5160 endodeoxyribonuclease RusA family protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E VK055_3246 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E VK055_2100 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N'' E VK055_2621 dnaT; dnaT K02317 dnaT; DNA replication protein DnaT E VK055_5051 exonuclease I, 3' --5' specific deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E VK055_2218 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E VK055_2217 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E VK055_4485 recA; protein RecA K03553 recA; recombination protein RecA E VK055_2587 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E VK055_3361 recF; ssDNA and dsDNA binding, ATP binding protein K03629 recF; DNA replication and repair protein RecF E VK055_3468 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E VK055_4162 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E VK055_4611 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E VK055_2095 recR; recombination protein RecR K06187 recR; recombination protein RecR E VK055_4562 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E VK055_2220 rdgC; nonspecific DNA binding protein; nucleoid component K03554 rdgC; recombination associated protein RdgC E VK055_5155 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC E VK055_0071 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E VK055_0072 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E VK055_0070 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E VK055_0385 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E VK055_4904 helicase conserved C-terminal domain protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E VK055_2218 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E VK055_2217 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E VK055_2790 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F VK055_4875 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F VK055_3362 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F VK055_1182 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F VK055_3092 hupA; DNA-binding protein HU-&alpha K05787 hupA; DNA-binding protein HU-alpha F VK055_2151 hupB; DNA-binding protein HU-&beta, NS1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F VK055_4162 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F VK055_4611 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F VK055_2095 recR; recombination protein RecR K06187 recR; recombination protein RecR F VK055_3473 ligB; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F VK055_4754 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F VK055_3805 fis; fis transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F VK055_0282 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F VK055_1545 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F VK055_5051 exonuclease I, 3' --5' specific deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F VK055_3158 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F VK055_3026 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F VK055_1726 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F VK055_0251 hns; H-NS transcriptional dual regulator K03746 hns; DNA-binding protein H-NS F VK055_1420 putative h-NS-like DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D VK055_2319 impB/mucB/samB family protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D VK055_1277 SOS mutagenesis and repair K03502 umuC; DNA polymerase V D VK055_1278 umuD; SOS mutagenesis error-prone repair processed to UmuD' forms complex with UmuC K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D VK055_4485 recA; protein RecA K03553 recA; recombination protein RecA D VK055_3042 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D VK055_4562 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D VK055_2515 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D VK055_3025 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D VK055_3376 putative dNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D VK055_1393 dinI-like family protein K12149 dinI; DNA-damage-inducible protein I D VK055_4486 recX family protein K03565 recX; regulatory protein D VK055_2668 hypothetical protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D VK055_3199 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D VK055_1495 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D VK055_1699 DEAD/DEAH box helicase family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D VK055_0125 DEAD/DEAH box helicase family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D VK055_2468 mutT; 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VK055_3489 dut; dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D VK055_4873 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D VK055_4511 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D VK055_4872 nrdB; nrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D VK055_4510 nrdF2; ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024