+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Lactobacillus acidophilus FSI4
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SD55_1290 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SD55_1200 era; 30S ribosomal subunit assembly GTPase Era K03595 era; GTPase
C SD55_0963 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SD55_1254 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
C SD55_1322 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
C SD55_0355 nusG; antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SD55_0813 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SD55_0209 ksgA; 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SD55_1310 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SD55_0369 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SD55_0857 methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SD55_1825 gidB; 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SD55_0826 mraW; 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SD55_0382 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SD55_1317 cell division protein FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SD55_0346 rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SD55_0086 rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SD55_1317 cell division protein FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SD55_0563 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SD55_0979 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SD55_1594 23S rRNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SD55_1154 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SD55_0674 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C SD55_0386 RimI family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SD55_1764 RimL family N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C SD55_1071 RimL family N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C SD55_1281 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C SD55_0949 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SD55_1290 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SD55_0415 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SD55_0345 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SD55_0258 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C SD55_0412 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C SD55_1200 era; 30S ribosomal subunit assembly GTPase Era K03595 era; GTPase
C SD55_1307 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SD55_0984 der; 50S ribosomal subunit assembly GTPase Der K03977 engA; GTPase
C SD55_0963 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C SD55_0994 rbgA; 50S ribosomal subunit assembly GTPase RbgA K14540 rbgA; ribosome biogenesis GTPase A
C SD55_1743 hflX; GTP-binding protein K03665 hflX; GTPase
C SD55_1504 GTPase K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C SD55_0789 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SD55_0951 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SD55_1250 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SD55_1255 rimP; 30S ribosome subunit maturation factor K09748 rimP; ribosome maturation factor RimP
C SD55_0003 yaaA; S4 family RNA binding protein K14761 rlbA; ribosome-associated protein
C SD55_1501 ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C SD55_1201 ybeY; 16S rRNA maturation/70S ribosome quality control endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C SD55_0695 yvyD; sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C SD55_1820 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase
C SD55_1499 DNA-binding protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024