+D GENES KO #

  KEGG Orthology (KO) - Ligilactobacillus agilis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:lagl00010] D BEN83_06740 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D BEN83_01405 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_01315 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BEN83_00945 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BEN83_00935 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BEN83_00940 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BEN83_07390 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08095 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_00950 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BEN83_04325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BEN83_09920 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BEN83_09925 2-oxoisovalerate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BEN83_09930 dienelactone hydrolase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_07615 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_00160 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_08120 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_07030 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BEN83_06440 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_04195 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_09535 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_09830 hypothetical protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] C 00020 Citrate cycle (TCA cycle) [PATH:lagl00020] D BEN83_08375 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_05595 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D BEN83_07030 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BEN83_09920 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BEN83_09925 2-oxoisovalerate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BEN83_09930 dienelactone hydrolase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:lagl00030] D BEN83_01405 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BEN83_06300 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BEN83_06925 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D BEN83_05505 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D BEN83_06655 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BEN83_02605 hypothetical protein K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BEN83_00555 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BEN83_08140 phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D BEN83_01505 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D BEN83_02295 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_07830 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BEN83_08510 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BEN83_01315 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:lagl00040] D BEN83_00075 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_04695 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_06655 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BEN83_05160 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K21030 tarI; D-ribitol-5-phosphate cytidylyltransferase [EC:2.7.7.40] C 00051 Fructose and mannose metabolism [PATH:lagl00051] D BEN83_08365 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D BEN83_02450 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_09355 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D BEN83_09970 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D BEN83_01315 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BEN83_00945 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BEN83_09975 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D BEN83_09020 PTS fructose transporter subunit IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09015 PTS mannose transporter subunit EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09010 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D BEN83_09005 PTS mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D BEN83_09350 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D BEN83_09345 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D BEN83_06920 PTS glucose transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] C 00052 Galactose metabolism [PATH:lagl00052] D BEN83_08120 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D BEN83_08130 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BEN83_00075 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_04695 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_06740 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D BEN83_10070 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D BEN83_05045 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D BEN83_02390 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_08455 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D BEN83_08960 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:lagl00500] D BEN83_08955 PTS beta-glucoside transporter subunit EIIBCA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D BEN83_08455 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D BEN83_08960 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D BEN83_02395 sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7] D BEN83_00075 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_04695 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_06820 hypothetical protein K02761 celB; cellobiose PTS system EIIC component D BEN83_06440 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_04195 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_09535 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_09830 hypothetical protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D BEN83_07205 glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D BEN83_07210 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D BEN83_07200 starch synthase K00703 glgA; starch synthase [EC:2.4.1.21] D BEN83_07215 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D BEN83_07195 glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D BEN83_08685 hypothetical protein K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D BEN83_00665 alpha-glycosidase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D BEN83_00645 maltose phosphorylase K00691 mapA; maltose phosphorylase [EC:2.4.1.8] D BEN83_00650 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6] D BEN83_07430 PTS glucose/maltose transporter subunit IIBCA K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D BEN83_07425 hydrolase K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D BEN83_09610 hypothetical protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_06740 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D BEN83_01405 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BEN83_08365 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lagl00520] D BEN83_08245 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D BEN83_00295 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D BEN83_07795 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D BEN83_08365 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D BEN83_09320 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BEN83_07230 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D BEN83_05050 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D BEN83_07835 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D BEN83_02560 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BEN83_07740 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BEN83_07250 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BEN83_00450 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D BEN83_05105 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BEN83_07635 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BEN83_06740 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_00075 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_04695 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_08130 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BEN83_10070 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D BEN83_05045 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D BEN83_09020 PTS fructose transporter subunit IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09015 PTS mannose transporter subunit EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09010 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D BEN83_09005 PTS mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D BEN83_01405 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BEN83_02450 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D BEN83_07205 glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D BEN83_07210 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:lagl00620] D BEN83_09920 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BEN83_09925 2-oxoisovalerate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BEN83_09930 dienelactone hydrolase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_01260 formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BEN83_02145 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_07985 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_09360 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_00995 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BEN83_04325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BEN83_06330 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BEN83_06350 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BEN83_06340 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BEN83_06335 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BEN83_08070 hypothetical protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D BEN83_05485 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D BEN83_07615 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_00160 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_06760 lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D BEN83_05345 lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D BEN83_05595 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D BEN83_08515 NAD-dependent malic enzyme K22212 mleA; malolactic enzyme [EC:4.1.1.101] D BEN83_07030 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lagl00630] D BEN83_08375 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_06105 enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D BEN83_06710 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BEN83_04040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_09310 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] C 00640 Propanoate metabolism [PATH:lagl00640] D BEN83_02145 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_07985 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_09360 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_00995 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_01260 formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BEN83_06330 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BEN83_06350 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BEN83_06340 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BEN83_06335 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BEN83_07615 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_00160 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] C 00650 Butanoate metabolism [PATH:lagl00650] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_06105 enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D BEN83_08065 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_08690 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_01260 formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D BEN83_05480 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D BEN83_10425 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BEN83_10430 alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D BEN83_02345 acetoin reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:lagl00660] D BEN83_10425 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BEN83_10430 alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] C 00562 Inositol phosphate metabolism [PATH:lagl00562] D BEN83_05610 hypothetical protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BEN83_00945 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:lagl00190] D BEN83_09670 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D BEN83_09640 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BEN83_09645 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BEN83_02520 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D BEN83_02530 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D BEN83_02525 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D BEN83_02515 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D BEN83_02535 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D BEN83_02500 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BEN83_02510 ATP synthase F0 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BEN83_02505 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D BEN83_04485 manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:lagl00710] D BEN83_00940 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BEN83_00935 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BEN83_01315 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BEN83_02605 hypothetical protein K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BEN83_00555 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BEN83_00945 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BEN83_06655 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BEN83_07030 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00720 Other carbon fixation pathways [PATH:lagl00720] D BEN83_05595 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_08375 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D BEN83_06330 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BEN83_06350 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BEN83_06340 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BEN83_06335 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BEN83_04275 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D BEN83_05410 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D BEN83_00995 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BEN83_02145 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_07985 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_09360 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:lagl00680] D BEN83_04040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BEN83_00950 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BEN83_01315 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_02145 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_07985 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_09360 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_00995 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BEN83_07390 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08095 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08660 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BEN83_08665 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00910 Nitrogen metabolism [PATH:lagl00910] D BEN83_07590 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D BEN83_06710 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BEN83_04380 hypothetical protein K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:lagl00920] D BEN83_01450 FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D BEN83_06290 oligoribonuclease K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D BEN83_10200 homoserine O-succinyltransferase K23304 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BEN83_10205 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BEN83_00475 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:lagl00061] D BEN83_06330 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BEN83_06350 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BEN83_06340 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BEN83_06335 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BEN83_06370 acyl carrier protein K02078 acpP; acyl carrier protein D BEN83_06620 acyl carrier protein K02078 acpP; acyl carrier protein D BEN83_06365 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BEN83_06375 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BEN83_00335 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BEN83_06355 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BEN83_06360 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06880 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06950 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06345 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BEN83_06385 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BEN83_06325 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:lagl00071] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis [PATH:lagl00074] D BEN83_00125 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D BEN83_06370 acyl carrier protein K02078 acpP; acyl carrier protein D BEN83_06620 acyl carrier protein K02078 acpP; acyl carrier protein D BEN83_06365 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:lagl00121] D BEN83_06190 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:lagl00561] D BEN83_09310 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D BEN83_08325 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D BEN83_06625 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D BEN83_04085 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BEN83_05360 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D BEN83_07525 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D BEN83_07155 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D BEN83_07135 phosphoglycerol transferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D BEN83_01395 alkaline phosphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D BEN83_02390 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:lagl00564] D BEN83_01230 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D BEN83_08320 alpha-glycerophosphate oxidase K00105 E1.1.3.21; alpha-glycerophosphate oxidase [EC:1.1.3.21] D BEN83_04085 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BEN83_05360 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D BEN83_01235 glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D BEN83_07525 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D BEN83_02730 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D BEN83_06535 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D BEN83_06870 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D BEN83_05805 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D BEN83_07005 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:lagl00600] D BEN83_02390 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:lagl00230] D BEN83_05690 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_07830 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BEN83_08510 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BEN83_02225 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D BEN83_02245 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D BEN83_02235 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D BEN83_02220 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D BEN83_02210 phosphoribosylformylglycinamidine synthase, purS protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D BEN83_02215 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BEN83_02230 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D BEN83_02175 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D BEN83_07565 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D BEN83_02170 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D BEN83_02205 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D BEN83_02180 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D BEN83_02240 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BEN83_06775 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BEN83_09775 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BEN83_00200 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D BEN83_08915 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D BEN83_06230 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D BEN83_04775 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D BEN83_08885 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BEN83_06910 GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D BEN83_06700 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D BEN83_01050 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BEN83_01045 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BEN83_07015 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D BEN83_04810 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D BEN83_07905 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D BEN83_06970 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D BEN83_09765 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D BEN83_06435 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D BEN83_10690 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:lagl00240] D BEN83_03665 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BEN83_03660 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BEN83_03650 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D BEN83_03655 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D BEN83_03670 dihydroorotate dehydrogenase B catalytic subunit K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] D BEN83_03680 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D BEN83_03675 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D BEN83_06550 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D BEN83_07750 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D BEN83_04515 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D BEN83_02995 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D BEN83_09775 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BEN83_02495 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D BEN83_03635 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D BEN83_06435 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D BEN83_07015 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D BEN83_01050 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BEN83_01045 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BEN83_05565 ComE operon protein 2 K01493 comEB; dCMP deaminase [EC:3.5.4.12] D BEN83_01100 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D BEN83_00565 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BEN83_02475 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D BEN83_04165 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:lagl00250] D BEN83_01160 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D BEN83_09205 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BEN83_05315 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BEN83_08490 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BEN83_08485 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BEN83_09765 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D BEN83_02180 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D BEN83_03650 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D BEN83_08065 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_08690 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_07590 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D BEN83_06710 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BEN83_03665 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BEN83_03660 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BEN83_02215 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BEN83_09320 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BEN83_02225 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:lagl00260] D BEN83_05790 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05780 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05455 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BEN83_10045 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D BEN83_10050 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D BEN83_10040 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D BEN83_04040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BEN83_09310 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D BEN83_07390 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08095 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08660 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BEN83_08665 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_10455 L-serine dehydratase, iron-sulfur-dependent subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BEN83_10460 L-serine dehydratase, iron-sulfur-dependent subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] C 00270 Cysteine and methionine metabolism [PATH:lagl00270] D BEN83_10200 homoserine O-succinyltransferase K23304 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BEN83_10205 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BEN83_08100 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BEN83_09450 homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10] D BEN83_02050 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D BEN83_05680 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D BEN83_02340 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D BEN83_00895 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D BEN83_05790 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05780 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05455 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BEN83_10045 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D BEN83_10050 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D BEN83_00475 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D BEN83_00480 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D BEN83_09890 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BEN83_02675 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BEN83_02760 hypothetical protein K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BEN83_07615 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_00160 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_10455 L-serine dehydratase, iron-sulfur-dependent subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BEN83_10460 L-serine dehydratase, iron-sulfur-dependent subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D BEN83_08660 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BEN83_08665 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:lagl00280] D BEN83_09890 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_05480 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lagl00290] D BEN83_10425 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BEN83_09890 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:lagl00300] D BEN83_10045 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D BEN83_05790 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05780 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05455 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BEN83_05540 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BEN83_04180 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D BEN83_00015 argD; acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BEN83_05695 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D BEN83_05190 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D BEN83_01425 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K05822 dapH; tetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89] D BEN83_04420 aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-] D BEN83_01430 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D BEN83_05755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BEN83_00115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:lagl00310] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_08065 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_08690 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_08165 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00220 Arginine biosynthesis [PATH:lagl00220] D BEN83_00020 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D BEN83_08490 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BEN83_08485 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BEN83_02215 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BEN83_06710 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BEN83_03665 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BEN83_03660 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BEN83_07590 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D BEN83_00005 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D BEN83_00010 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D BEN83_10860 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D BEN83_00015 argD; acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:lagl00330] D BEN83_08550 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D BEN83_00290 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D BEN83_08535 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D BEN83_08530 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D BEN83_08165 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:lagl00340] D BEN83_04470 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D BEN83_04475 hypothetical protein K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D BEN83_04435 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D BEN83_04440 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D BEN83_04450 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D BEN83_04455 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D BEN83_04445 imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D BEN83_04460 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D BEN83_04430 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BEN83_04480 histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D BEN83_04465 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D BEN83_08220 flavocytochrome c K17363 urdA; urocanate reductase [EC:1.3.99.33] C 00350 Tyrosine metabolism [PATH:lagl00350] D BEN83_04430 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BEN83_08065 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_08690 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_09565 aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] C 00360 Phenylalanine metabolism [PATH:lagl00360] D BEN83_04430 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BEN83_09565 aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D BEN83_08165 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00380 Tryptophan metabolism [PATH:lagl00380] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lagl00400] D BEN83_02725 hypothetical protein K00891 aroK; shikimate kinase [EC:2.7.1.71] D BEN83_04430 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:lagl00430] D BEN83_00995 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BEN83_02145 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_07985 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BEN83_09360 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:lagl00450] D BEN83_08100 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BEN83_02645 cysteine sulfinate desulfinase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D BEN83_00860 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D BEN83_07880 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:lagl00460] D BEN83_01160 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D BEN83_04040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:lagl00470] D BEN83_00130 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BEN83_08165 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D BEN83_02700 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BEN83_06840 D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D BEN83_06830 D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D BEN83_02215 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BEN83_04415 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D BEN83_05745 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BEN83_05695 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D BEN83_05190 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:lagl00480] D BEN83_02675 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BEN83_02760 hypothetical protein K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BEN83_02715 peptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D BEN83_05505 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D BEN83_06300 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BEN83_08550 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:lagl00542] D BEN83_07300 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lagl00541] D BEN83_00075 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_04695 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BEN83_08130 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BEN83_10070 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D BEN83_05045 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D BEN83_10115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_05145 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_10125 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_05135 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_10120 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BEN83_05140 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BEN83_10130 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D BEN83_05130 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D BEN83_02450 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D BEN83_07835 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D BEN83_05105 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BEN83_07635 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:lagl00550] D BEN83_02560 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BEN83_07740 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BEN83_07250 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BEN83_06115 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D BEN83_05745 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BEN83_05755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BEN83_02700 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BEN83_00115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D BEN83_03715 UDP kinase K00887 dgkA; undecaprenol kinase [EC:2.7.1.66] D BEN83_06540 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D BEN83_00050 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BEN83_09390 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BEN83_05750 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BEN83_05740 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D BEN83_03020 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_03620 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_04615 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_06175 carboxypeptidase K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D BEN83_05760 penicillin-binding protein K08724 pbpB; penicillin-binding protein 2B D BEN83_06765 penicillin-binding protein K21465 pbpA; penicillin-binding protein A D BEN83_10320 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BEN83_02470 UDP-N-acetylmuramyl peptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D BEN83_02465 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:lagl00552] D BEN83_00050 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BEN83_09390 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BEN83_07300 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D BEN83_00305 acetylglucosaminyldiphospho-UDP acetyl-beta-D-mannosaminyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D BEN83_04750 hypothetical protein K21285 tagB; teichoic acid glycerol-phosphate primase [EC:2.7.8.44] D BEN83_06840 D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D BEN83_06830 D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D BEN83_06835 D-alanyl-lipoteichoic acid biosynthesis protein DltB K03739 dltB; membrane protein involved in D-alanine export D BEN83_06825 D-alanyl-lipoteichoic acid biosynthesis protein DltD K03740 dltD; D-alanine transfer protein D BEN83_07435 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D BEN83_10395 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D BEN83_08435 transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D BEN83_07135 phosphoglycerol transferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D BEN83_01395 alkaline phosphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D BEN83_07155 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D BEN83_07150 glycosyltransferase K13678 cpoA; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-galactosyltransferase [EC:2.4.1.-] D BEN83_02155 hypothetical protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] D BEN83_05095 hypothetical protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium D BEN83_07300 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00543 Exopolysaccharide biosynthesis [PATH:lagl00543] D BEN83_07300 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:lagl00730] D BEN83_02790 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_05675 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_02795 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D BEN83_06660 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D BEN83_06650 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D BEN83_10690 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:lagl00740] D BEN83_04690 HAD family hydrolase K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] D BEN83_06480 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D BEN83_01450 FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D BEN83_03010 NADPH-dependent oxidoreductase K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38] D BEN83_05690 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:lagl00750] D BEN83_04375 hypothetical protein K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D BEN83_09805 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D BEN83_08665 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BEN83_10040 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:lagl00760] D BEN83_08600 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D BEN83_09775 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BEN83_06030 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D BEN83_00310 NAD(+) synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D BEN83_07885 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D BEN83_06965 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D BEN83_08065 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BEN83_08690 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:lagl00770] D BEN83_10425 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BEN83_05435 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D BEN83_08890 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D BEN83_06690 phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D BEN83_05580 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D BEN83_06085 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D BEN83_00125 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D BEN83_09890 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:lagl00780] D BEN83_06355 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BEN83_06360 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06880 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06950 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06345 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BEN83_06385 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BEN83_06325 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BEN83_07790 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:lagl00785] D BEN83_09940 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_09920 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BEN83_09925 2-oxoisovalerate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BEN83_09930 dienelactone hydrolase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00790 Folate biosynthesis [PATH:lagl00790] D BEN83_04160 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D BEN83_05865 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] C 00670 One carbon pool by folate [PATH:lagl00670] D BEN83_04160 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D BEN83_04275 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D BEN83_05410 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D BEN83_04040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BEN83_02235 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D BEN83_02240 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BEN83_06680 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D BEN83_04165 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D BEN83_06755 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lagl00130] D BEN83_04850 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D BEN83_09635 o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D BEN83_09630 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D BEN83_09625 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D BEN83_09665 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D BEN83_00635 NAD(P)-dependent oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:lagl00900] D BEN83_07855 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_05480 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D BEN83_07895 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D BEN83_04650 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D BEN83_04660 phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2] D BEN83_04655 diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D BEN83_04665 type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D BEN83_05395 geranyl transferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D BEN83_06540 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:lagl00523] D BEN83_10115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_05145 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_10125 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_05135 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_10120 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BEN83_05140 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BEN83_10130 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D BEN83_05130 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D BEN83_10125 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_05135 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:lagl00332] D BEN83_08535 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D BEN83_08530 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:lagl00261] D BEN83_05790 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05780 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BEN83_05455 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BEN83_05540 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BEN83_04180 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:lagl00521] D BEN83_06740 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D BEN83_00865 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D BEN83_05610 hypothetical protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BEN83_10115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_05145 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_10125 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_05135 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_10120 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BEN83_05140 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BEN83_10130 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D BEN83_05130 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D BEN83_06740 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:lagl00525] D BEN83_10115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_05145 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BEN83_10125 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BEN83_05135 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis D BEN83_04430 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D BEN83_06365 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BEN83_06360 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06880 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06950 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06325 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D BEN83_06370 acyl carrier protein K02078 acpP; acyl carrier protein D BEN83_06620 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D BEN83_02050 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:lagl00362] D BEN83_07385 hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D BEN83_05195 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D BEN83_09905 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D BEN83_08070 hypothetical protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D BEN83_05485 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation D BEN83_04405 noncanonical pyrimidine nucleotidase, YjjG family K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:lagl00361] D BEN83_07385 hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D BEN83_04405 noncanonical pyrimidine nucleotidase, YjjG family K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation D BEN83_09565 aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] C 00622 Xylene degradation [PATH:lagl00622] D BEN83_09565 aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D BEN83_07385 hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D BEN83_05195 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation D BEN83_07385 hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D BEN83_05195 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:lagl03020] D BEN83_10545 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BEN83_10550 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BEN83_10710 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BEN83_06695 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BEN83_07755 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:lagl03010] D BEN83_04510 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D BEN83_05340 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D BEN83_10615 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D BEN83_02770 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D BEN83_10665 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D BEN83_09245 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D BEN83_10565 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D BEN83_10650 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D BEN83_10755 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D BEN83_10580 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D BEN83_10705 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D BEN83_10560 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D BEN83_10700 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D BEN83_08785 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D BEN83_05545 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D BEN83_06590 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D BEN83_10630 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D BEN83_09235 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D BEN83_10605 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D BEN83_05550 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D BEN83_03695 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D BEN83_07375 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D BEN83_10600 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D BEN83_10585 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D BEN83_10590 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D BEN83_10645 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D BEN83_10655 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D BEN83_07350 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D BEN83_09755 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D BEN83_07355 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D BEN83_07380 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D BEN83_10750 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D BEN83_10635 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D BEN83_10675 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D BEN83_10620 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D BEN83_10715 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D BEN83_10660 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D BEN83_06570 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D BEN83_06050 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D BEN83_05450 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D BEN83_10610 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D BEN83_10595 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D BEN83_10640 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D BEN83_05440 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D BEN83_06645 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D BEN83_10625 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D BEN83_10670 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D BEN83_07730 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BEN83_00790 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D BEN83_06055 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D BEN83_10470 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_01930 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_05980 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_08260 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_08995 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_00225 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07125 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_01940 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_05975 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_08255 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_08990 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_00235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_07950 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_10485 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_01945 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_07120 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_08985 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_10490 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_00240 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_05970 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_08250 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_07945 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:lagl00970] D BEN83_00230 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_01935 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_07955 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_10480 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_00920 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_07645 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_01985 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_05935 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_10520 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_05460 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_00245 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_01950 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_07115 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_08175 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_02015 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_02045 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_04710 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_05915 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_07095 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_05885 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BEN83_07065 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BEN83_00285 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_05890 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_07070 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_02405 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_00250 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_01955 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_02035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_07105 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_06220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_02020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_01975 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_02265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_05945 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_07935 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_10510 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_05895 tRNA-His K14226 tRNA-His; tRNA His D BEN83_07080 tRNA-His K14226 tRNA-His; tRNA His D BEN83_02025 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BEN83_07960 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BEN83_10475 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BEN83_05955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_01980 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_05940 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_10515 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_04720 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_05880 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_07060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_00330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_02100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_09790 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_09795 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_01965 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_05960 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_10500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_02010 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_01995 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_02000 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_02040 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_05925 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_04705 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BEN83_05910 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BEN83_07090 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BEN83_01990 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_10530 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_05930 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_10525 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_02030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_02005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_04715 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_05920 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_07110 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_04970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_01970 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_05950 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_10505 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_07630 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_00255 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_07925 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_04700 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BEN83_05900 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BEN83_00280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BEN83_05905 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BEN83_07085 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BEN83_01960 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_05965 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_07100 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_07940 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_10495 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_00765 glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D BEN83_07540 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D BEN83_07530 aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D BEN83_07545 asparaginyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D BEN83_06280 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BEN83_04765 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BEN83_04630 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D BEN83_04320 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BEN83_04315 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BEN83_06065 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BEN83_10440 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BEN83_00770 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BEN83_07880 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BEN83_06680 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D BEN83_02800 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BEN83_02060 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BEN83_05700 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BEN83_00220 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D BEN83_02270 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BEN83_06525 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BEN83_04770 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BEN83_02980 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BEN83_02985 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BEN83_07970 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BEN83_07910 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:lagl03060] D BEN83_10680 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BEN83_09470 accessory Sec system protein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY D BEN83_00795 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BEN83_00960 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BEN83_06400 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BEN83_09285 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_05490 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_07275 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_09490 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_06595 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BEN83_01075 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D BEN83_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BEN83_04055 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BEN83_01240 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BEN83_03625 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:lagl04122] D BEN83_02790 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_05675 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_05665 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D BEN83_02795 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:lagl03018] D BEN83_00950 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BEN83_00965 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BEN83_00120 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D BEN83_04525 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BEN83_00315 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BEN83_07735 transcription termination factor Rho K03628 rho; transcription termination factor Rho D BEN83_06855 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D BEN83_05205 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D BEN83_05535 RNase J family beta-CASP ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-] D BEN83_05635 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_05240 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BEN83_07310 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] B B 09124 Replication and repair C 03030 DNA replication [PATH:lagl03030] D BEN83_07255 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BEN83_04335 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BEN83_06520 polC; PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D BEN83_01080 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BEN83_01110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BEN83_05555 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BEN83_09270 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BEN83_09760 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BEN83_02925 hypothetical protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BEN83_04310 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D BEN83_09240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BEN83_01340 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BEN83_04285 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BEN83_04130 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D BEN83_06095 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BEN83_07555 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:lagl03410] D BEN83_04620 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D BEN83_00990 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D BEN83_06090 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D BEN83_02735 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D BEN83_08360 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BEN83_06095 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BEN83_06780 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BEN83_07555 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:lagl03420] D BEN83_00170 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D BEN83_00890 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D BEN83_00885 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D BEN83_05330 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D BEN83_07560 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_08900 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_07920 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_06095 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BEN83_07555 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:lagl03430] D BEN83_06430 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BEN83_06250 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D BEN83_06425 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D BEN83_07560 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_08900 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_07920 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_05405 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D BEN83_05400 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D BEN83_06780 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BEN83_09240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BEN83_04335 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BEN83_06520 polC; PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D BEN83_09270 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BEN83_01080 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BEN83_05555 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BEN83_01110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BEN83_07255 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BEN83_07555 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:lagl03440] D BEN83_06780 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BEN83_09240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BEN83_09260 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D BEN83_03725 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D BEN83_01090 recombination protein RecR K06187 recR; recombination protein RecR D BEN83_06860 recombinase RecA K03553 recA; recombination protein RecA D BEN83_06095 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BEN83_06420 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D BEN83_06415 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D BEN83_06630 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D BEN83_02940 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BEN83_00040 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BEN83_05650 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BEN83_04335 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BEN83_06520 polC; PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D BEN83_09270 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BEN83_01080 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BEN83_05555 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BEN83_01110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BEN83_07255 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BEN83_06685 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:lagl02010] D BEN83_09695 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D BEN83_09690 spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein D BEN83_09685 spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D BEN83_09680 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D BEN83_08295 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D BEN83_08290 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D BEN83_00705 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BEN83_00680 sugar ABC transporter substrate-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D BEN83_00685 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D BEN83_00690 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D BEN83_09605 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D BEN83_01285 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BEN83_01290 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D BEN83_01295 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BEN83_01300 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BEN83_01305 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BEN83_09885 glutamine ABC transporter substrate-binding protein K10036 glnH; glutamine transport system substrate-binding protein D BEN83_02410 glutamine ABC transporter substrate-binding protein K10036 glnH; glutamine transport system substrate-binding protein D BEN83_02415 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D BEN83_10250 glutamine ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D BEN83_10255 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D BEN83_10260 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D BEN83_10245 amino acid ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D BEN83_05990 ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D BEN83_05985 glnQ; glutamine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D BEN83_02335 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BEN83_08935 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BEN83_02330 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D BEN83_08940 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D BEN83_02325 phosphate ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BEN83_08945 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BEN83_10215 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10280 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_06110 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_02840 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_08640 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_09035 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10285 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D BEN83_10290 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BEN83_10295 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D BEN83_10300 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BEN83_02810 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component D BEN83_10730 cobalt ABC transporter ATP-binding protein K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_08020 ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_08385 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_00755 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_10720 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_10725 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_01245 hypothetical protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D BEN83_09395 bacitracin ABC transporter permease K19310 bcrB; bacitracin transport system permease protein D BEN83_09400 bacitracin ABC transporter ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein D BEN83_00730 hypothetical protein K19084 braE; bacitracin transport system permease protein D BEN83_00725 bacteriocin ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D BEN83_07260 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D BEN83_07265 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BEN83_03170 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BEN83_09365 multidrug ABC transporter ATP-binding protein K18891 patA; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_09370 multidrug ABC transporter permease K18892 patB; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_07695 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_07690 multidrug ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_09655 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D BEN83_09650 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D BEN83_00525 Lsa family ABC-F type ribosomal protection protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:lagl02060] D BEN83_07160 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D BEN83_07165 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D BEN83_07430 PTS glucose/maltose transporter subunit IIBCA K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D BEN83_08955 PTS beta-glucoside transporter subunit EIIBCA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D BEN83_06445 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D BEN83_00595 PTS fructose transporter subunit IIB K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D BEN83_09350 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D BEN83_09345 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D BEN83_06820 hypothetical protein K02761 celB; cellobiose PTS system EIIC component D BEN83_09020 PTS fructose transporter subunit IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09015 PTS mannose transporter subunit EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09010 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D BEN83_09005 PTS mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D BEN83_06920 PTS glucose transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D BEN83_09975 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D BEN83_09970 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:lagl03070] D BEN83_00795 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BEN83_00960 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BEN83_10680 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BEN83_09470 accessory Sec system protein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY D BEN83_06400 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BEN83_09285 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_05490 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_07275 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_09490 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BEN83_06595 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:lagl02020] D BEN83_00835 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BEN83_00830 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D BEN83_01285 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BEN83_09840 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BEN83_03595 hypothetical protein K02406 fliC; flagellin D BEN83_03600 flagellin K02406 fliC; flagellin D BEN83_03155 RNA polymerase K02405 fliA; RNA polymerase sigma factor FliA D BEN83_03025 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D BEN83_09815 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D BEN83_09810 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D BEN83_09275 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D BEN83_00730 hypothetical protein K19084 braE; bacitracin transport system permease protein D BEN83_00725 bacteriocin ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D BEN83_00720 hypothetical protein K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D BEN83_00710 DNA-binding response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D BEN83_06840 D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D BEN83_06835 D-alanyl-lipoteichoic acid biosynthesis protein DltB K03739 dltB; membrane protein involved in D-alanine export D BEN83_06830 D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D BEN83_06825 D-alanyl-lipoteichoic acid biosynthesis protein DltD K03740 dltD; D-alanine transfer protein D BEN83_01005 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D BEN83_07000 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BEN83_05495 two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D BEN83_05500 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D BEN83_09050 hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02585 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02590 DNA-binding response regulator K07707 agrA; two-component system, LytTR family, response regulator AgrA D BEN83_09045 hypothetical protein K07707 agrA; two-component system, LytTR family, response regulator AgrA D BEN83_01035 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D BEN83_01040 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D BEN83_06710 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_00925 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BEN83_03195 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BEN83_00580 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_00620 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_01515 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_10745 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_02625 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03045 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03175 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03180 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BEN83_03215 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D BEN83_03200 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BEN83_03210 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BEN83_03190 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BEN83_09640 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BEN83_09645 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BEN83_05105 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BEN83_07635 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D BEN83_03230 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D BEN83_08550 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:lagl02024] D BEN83_02340 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D BEN83_00895 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D BEN83_09325 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D BEN83_09050 hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02585 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02590 DNA-binding response regulator K07707 agrA; two-component system, LytTR family, response regulator AgrA D BEN83_09045 hypothetical protein K07707 agrA; two-component system, LytTR family, response regulator AgrA D BEN83_10215 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10280 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_06110 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_02840 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_08640 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_09035 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10285 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D BEN83_10290 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BEN83_10295 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D BEN83_10300 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BEN83_09285 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_05490 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_00795 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BEN83_00960 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BEN83_10680 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BEN83_09470 accessory Sec system protein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY D BEN83_06400 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BEN83_07275 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_09490 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BEN83_06595 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:lagl02030] D BEN83_00580 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_00620 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_01515 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_10745 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_02625 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03045 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03175 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03200 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BEN83_03180 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BEN83_03215 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D BEN83_03210 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BEN83_03205 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D BEN83_03190 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BEN83_03185 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D BEN83_03195 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BEN83_03080 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BEN83_03220 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BEN83_03225 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D BEN83_03025 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D BEN83_03030 hypothetical protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:lagl02040] D BEN83_03070 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D BEN83_03075 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BEN83_03080 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BEN83_03085 hypothetical protein K02411 fliH; flagellar assembly protein FliH D BEN83_03090 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BEN83_03095 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D BEN83_03120 hypothetical protein K02415 fliL; flagellar protein FliL D BEN83_03220 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BEN83_03225 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D BEN83_03125 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D BEN83_03130 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BEN83_03135 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BEN83_03140 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BEN83_03150 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BEN83_03145 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB D BEN83_03060 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D BEN83_03065 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D BEN83_03105 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D BEN83_03110 flgG; flagellar basal body rod protein FlgG K02390 flgE; flagellar hook protein FlgE D BEN83_03160 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF D BEN83_03165 hypothetical protein K02392 flgG; flagellar basal-body rod protein FlgG D BEN83_03240 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D BEN83_03245 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D BEN83_03595 hypothetical protein K02406 fliC; flagellin D BEN83_03600 flagellin K02406 fliC; flagellin D BEN83_03255 hypothetical protein K02407 fliD; flagellar hook-associated protein 2 D BEN83_03265 flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D BEN83_03025 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D BEN83_03030 hypothetical protein K02557 motB; chemotaxis protein MotB D BEN83_03230 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D BEN83_04305 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D BEN83_00925 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BEN83_03155 RNA polymerase K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D BEN83_00950 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:lagl01501] D BEN83_08245 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D BEN83_10215 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10280 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_06110 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_02840 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_08640 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_09035 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10285 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D BEN83_10290 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BEN83_10295 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D BEN83_10300 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BEN83_03020 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_03620 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_04615 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_06175 carboxypeptidase K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] C 01502 Vancomycin resistance [PATH:lagl01502] D BEN83_07000 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BEN83_02700 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BEN83_00130 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BEN83_00115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D BEN83_05750 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BEN83_05740 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lagl01503] D BEN83_04785 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BEN83_09840 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BEN83_06840 D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D BEN83_06835 D-alanyl-lipoteichoic acid biosynthesis protein DltB K03739 dltB; membrane protein involved in D-alanine export D BEN83_06830 D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D BEN83_06825 D-alanyl-lipoteichoic acid biosynthesis protein DltD K03740 dltD; D-alanine transfer protein D BEN83_01005 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:lagl01000] C 01001 Protein kinases [BR:lagl01001] D BEN83_06665 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D BEN83_05180 exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D BEN83_00835 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BEN83_09815 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D BEN83_00720 hypothetical protein K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D BEN83_05495 two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D BEN83_01035 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D BEN83_09050 hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02585 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_03200 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:lagl01009] D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_06670 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:lagl01002] D BEN83_03625 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D BEN83_00550 aminopeptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D BEN83_08885 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BEN83_02630 hypothetical protein K07010 K07010; putative glutamine amidotransferase D BEN83_02670 gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase D BEN83_08670 hypothetical protein K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-] D BEN83_07400 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D BEN83_02225 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D BEN83_09320 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BEN83_09205 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BEN83_05315 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BEN83_09615 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D BEN83_06190 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D BEN83_05320 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D BEN83_02350 peptidase U34 K08659 pepDA; dipeptidase [EC:3.4.-.-] D BEN83_08405 peptidase C69 K08659 pepDA; dipeptidase [EC:3.4.-.-] D BEN83_05200 peptidase U34 K08659 pepDA; dipeptidase [EC:3.4.-.-] D BEN83_06195 hypothetical protein K07052 K07052; CAAX protease family protein D BEN83_10760 hypothetical protein K07052 K07052; CAAX protease family protein D BEN83_07320 hypothetical protein K07052 K07052; CAAX protease family protein D BEN83_09745 hypothetical protein K07052 K07052; CAAX protease family protein D BEN83_02715 peptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D BEN83_06980 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D BEN83_09195 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D BEN83_07000 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BEN83_02090 dipeptidase PepV K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-] D BEN83_04290 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D BEN83_01430 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D BEN83_00070 type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D BEN83_05430 Xaa-Pro dipeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D BEN83_07640 peptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D BEN83_00205 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D BEN83_00110 zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D BEN83_06530 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D BEN83_09840 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BEN83_10320 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BEN83_00915 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D BEN83_10210 Xaa-Pro dipeptidyl-peptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11] D BEN83_05575 hypothetical protein K07177 K07177; Lon-like protease D BEN83_05375 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BEN83_04055 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BEN83_01240 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BEN83_04140 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D BEN83_06750 rhomboid family intramembrane serine protease K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D BEN83_04955 hypothetical protein K06904 GP4; Escherichia/Staphylococcus phage prohead protease D BEN83_04100 HslU--HslV peptidase proteolytic subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] C 01003 Glycosyltransferases [BR:lagl01003] D BEN83_07155 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D BEN83_07150 glycosyltransferase K13678 cpoA; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-galactosyltransferase [EC:2.4.1.-] D BEN83_07200 starch synthase K00703 glgA; starch synthase [EC:2.4.1.21] D BEN83_03020 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_03620 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_04615 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_06175 carboxypeptidase K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D BEN83_00305 acetylglucosaminyldiphospho-UDP acetyl-beta-D-mannosaminyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D BEN83_07300 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:lagl01005] D BEN83_07300 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D BEN83_10025 bactoprenol glucosyl transferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lagl01011] D BEN83_02560 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BEN83_07740 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BEN83_07250 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BEN83_06115 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D BEN83_05745 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BEN83_05755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BEN83_02700 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BEN83_00130 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BEN83_04415 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D BEN83_05750 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BEN83_05740 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D BEN83_00050 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BEN83_09390 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BEN83_03020 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_03620 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_04615 carboxypeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BEN83_06175 carboxypeptidase K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D BEN83_05760 penicillin-binding protein K08724 pbpB; penicillin-binding protein 2B D BEN83_06765 penicillin-binding protein K21465 pbpA; penicillin-binding protein A D BEN83_10320 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BEN83_07000 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BEN83_08670 hypothetical protein K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-] D BEN83_07400 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D BEN83_05320 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D BEN83_02990 ABC transporter substrate-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D BEN83_04785 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:lagl01004] D BEN83_06365 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BEN83_06375 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BEN83_00335 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BEN83_06355 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BEN83_06360 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06880 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06950 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BEN83_06345 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BEN83_06385 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BEN83_06325 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BEN83_06625 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D BEN83_04085 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BEN83_05360 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:lagl01006] D BEN83_05395 geranyl transferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D BEN83_06540 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D BEN83_06725 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D BEN83_09665 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] C 01007 Amino acid related enzymes [BR:lagl01007] D BEN83_00765 glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D BEN83_07970 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BEN83_07910 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D BEN83_00770 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BEN83_02270 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BEN83_07880 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BEN83_05700 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BEN83_02800 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BEN83_02060 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BEN83_00220 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D BEN83_04765 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BEN83_04630 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D BEN83_04770 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BEN83_04320 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BEN83_04315 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BEN83_10440 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BEN83_06525 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BEN83_06065 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BEN83_06280 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BEN83_02980 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BEN83_02985 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BEN83_04420 aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-] D BEN83_04430 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BEN83_08100 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BEN83_00015 argD; acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BEN83_08165 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D BEN83_09890 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BEN83_08665 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:lagl00194] D BEN83_02535 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D BEN83_02530 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D BEN83_02525 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D BEN83_02520 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D BEN83_02515 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D BEN83_02510 ATP synthase F0 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BEN83_02505 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D BEN83_02500 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:lagl03000] D BEN83_07055 hypothetical protein K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D BEN83_09965 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D BEN83_09850 hypothetical protein K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D BEN83_04350 decarboxylase K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D BEN83_04425 alkaline phosphatase K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D BEN83_01470 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BEN83_07990 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BEN83_08460 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D BEN83_08965 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D BEN83_09725 trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D BEN83_08135 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D BEN83_00300 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BEN83_09180 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BEN83_01015 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D BEN83_10230 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D BEN83_07975 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D BEN83_04565 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BEN83_10790 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BEN83_09595 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D BEN83_09115 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D BEN83_09150 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D BEN83_10370 Cro/Cl family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D BEN83_07790 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BEN83_07840 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D BEN83_07325 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D BEN83_03305 transcriptional regulator K07729 K07729; putative transcriptional regulator D BEN83_00520 transcriptional regulator K07729 K07729; putative transcriptional regulator D BEN83_05275 transcriptional regulator K07729 K07729; putative transcriptional regulator D BEN83_00590 hypothetical protein K03488 licT; beta-glucoside operon transcriptional antiterminator D BEN83_01360 antitermination protein BlgG K03488 licT; beta-glucoside operon transcriptional antiterminator D BEN83_09315 hypothetical protein K03483 mtlR; mannitol operon transcriptional activator D BEN83_08585 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BEN83_08590 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BEN83_06180 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism D BEN83_05385 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism D BEN83_05250 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BEN83_10535 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D BEN83_00930 SorC family transcriptional regulator K05311 cggR; central glycolytic genes regulator D BEN83_03635 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D BEN83_06080 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BEN83_05775 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:lagl03021] D BEN83_10710 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BEN83_10545 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BEN83_10550 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BEN83_07755 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta D BEN83_06695 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BEN83_04305 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D BEN83_07930 hypothetical protein K27000 sigH; RNA polymerase sigma-H factor D BEN83_00925 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BEN83_03155 RNA polymerase K02405 fliA; RNA polymerase sigma factor FliA D BEN83_06510 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D BEN83_05415 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D BEN83_00815 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D BEN83_03000 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D BEN83_07735 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:lagl03019] D BEN83_06615 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BEN83_05205 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D BEN83_05535 RNase J family beta-CASP ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-] D BEN83_05635 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D BEN83_06855 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D BEN83_00965 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BEN83_06170 3'-5' exonuclease K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D BEN83_00120 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D BEN83_06285 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D BEN83_04525 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BEN83_00315 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BEN83_00950 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BEN83_07735 transcription termination factor Rho K03628 rho; transcription termination factor Rho D BEN83_04330 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D BEN83_05240 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BEN83_07310 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BEN83_00900 RNase adaptor protein RapZ K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:lagl03011] D BEN83_04510 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D BEN83_05340 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D BEN83_10615 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D BEN83_02770 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D BEN83_10665 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D BEN83_09245 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D BEN83_10565 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D BEN83_10650 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D BEN83_10755 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D BEN83_10580 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D BEN83_10705 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D BEN83_10560 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D BEN83_10700 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D BEN83_08785 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D BEN83_05545 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D BEN83_06590 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D BEN83_10630 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D BEN83_09235 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D BEN83_10605 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D BEN83_05550 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D BEN83_03695 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D BEN83_07375 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D BEN83_10600 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D BEN83_10585 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D BEN83_10590 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D BEN83_10645 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D BEN83_10655 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D BEN83_09755 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D BEN83_07355 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D BEN83_07380 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D BEN83_07350 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D BEN83_10750 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D BEN83_10635 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D BEN83_10675 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D BEN83_10620 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D BEN83_10715 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D BEN83_10660 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D BEN83_06570 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D BEN83_06050 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D BEN83_05450 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D BEN83_10610 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D BEN83_10595 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D BEN83_10640 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D BEN83_05440 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D BEN83_06645 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D BEN83_10625 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D BEN83_10670 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D BEN83_07730 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BEN83_00790 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D BEN83_06055 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D BEN83_01945 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_07120 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_08985 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_10490 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_00240 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_05970 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_08250 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_07945 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_10470 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_01930 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_05980 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_08260 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_08995 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_00225 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07125 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_01940 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_05975 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_08255 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_08990 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_00235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_07950 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_10485 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:lagl03009] D BEN83_06615 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BEN83_03720 GTPase Era K03595 era; GTPase D BEN83_05325 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D BEN83_06510 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D BEN83_05415 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D BEN83_00815 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D BEN83_02080 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D BEN83_07865 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BEN83_06675 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BEN83_01065 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D BEN83_05585 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BEN83_04820 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BEN83_08595 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BEN83_05770 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BEN83_01120 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BEN83_05390 cell division protein FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D BEN83_00780 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BEN83_09845 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BEN83_07520 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D BEN83_04235 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BEN83_10365 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BEN83_06960 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BEN83_03630 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BEN83_01170 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D BEN83_06580 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D BEN83_04825 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D BEN83_06270 Holliday junction DNA helicase RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D BEN83_00775 Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D BEN83_00120 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D BEN83_06285 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D BEN83_06660 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D BEN83_04505 ribosome biogenesis GTPase Der K03977 engA; GTPase D BEN83_04135 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A D BEN83_10275 GTPase HflX K03665 hflX; GTPase D BEN83_06040 ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase D BEN83_02490 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D BEN83_04810 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D BEN83_06490 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D BEN83_06515 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D BEN83_09265 RNA-binding protein K14761 rlbA; ribosome-associated protein D BEN83_06020 ribosome silencing factor K09710 ybeB; ribosome-associated protein D BEN83_03710 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D BEN83_06035 RNA-binding protein K07574 yhbY; RNA-binding protein D BEN83_07280 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D BEN83_08575 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D BEN83_06005 DNA-binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:lagl03016] D BEN83_06790 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D BEN83_04175 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D BEN83_06525 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BEN83_05700 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BEN83_02060 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BEN83_07880 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BEN83_02270 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BEN83_00220 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D BEN83_04765 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BEN83_06280 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BEN83_04630 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D BEN83_06065 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BEN83_10440 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BEN83_00770 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BEN83_02800 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BEN83_04770 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BEN83_02980 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BEN83_02985 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BEN83_07970 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BEN83_07910 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D BEN83_04805 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D BEN83_06155 histidine triad protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D BEN83_06135 tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D BEN83_10735 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D BEN83_06485 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D BEN83_02790 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_05675 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_02490 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D BEN83_06725 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D BEN83_09425 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D BEN83_09430 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D BEN83_09280 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D BEN83_04595 rnpB; RNase P RNA component class B K01978 rnpB; M1 RNA D BEN83_04320 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BEN83_04315 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BEN83_00765 glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D BEN83_06905 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D BEN83_01070 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D BEN83_00215 tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D BEN83_04115 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D BEN83_06575 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D BEN83_04300 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D BEN83_06900 tRNA (uridine(34)/cytosine(34/5-carboxymethylaminomethyluridine(34)-2'-O))-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D BEN83_02965 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D BEN83_05665 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D BEN83_06410 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D BEN83_07670 DNA integration/recombination/inversion protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D BEN83_06405 tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D BEN83_02795 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D BEN83_00195 tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D BEN83_01165 tRNA N6-adenosine(37)-N6-threonylcarbamoyltransferase complex dimerization subunit TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D BEN83_01175 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D BEN83_01000 tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D BEN83_06010 hypothetical protein K27343 tmcAL; tRNAmet cytidine acetate ligase [EC:6.3.1.22] D BEN83_00965 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] C 03012 Translation factors [BR:lagl03012] D BEN83_06495 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D BEN83_06060 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D BEN83_07330 multidrug ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D BEN83_05335 translation elongation factor Ts K02357 tsf; elongation factor Ts D BEN83_05525 translation elongation factor Tu K02358 tuf; elongation factor Tu D BEN83_10570 translation elongation factor G K02355 fusA; elongation factor G D BEN83_02480 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D BEN83_06545 ribosome recycling factor K02838 frr; ribosome recycling factor D BEN83_02485 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D BEN83_00165 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D BEN83_10695 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D BEN83_08355 elongation factor P K02356 efp; elongation factor P D BEN83_05425 elongation factor P K02356 efp; elongation factor P D BEN83_07270 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D BEN83_01255 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:lagl03110] D BEN83_03730 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D BEN83_10540 ATP-dependent Clp protease ATP-binding subunit ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D BEN83_03875 AAA family ATPase K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D BEN83_07175 ATP-dependent Clp protease ATP-binding subunit K03697 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE D BEN83_05510 ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D BEN83_04095 HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D BEN83_05240 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BEN83_07310 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BEN83_05235 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D BEN83_00210 Hsp33 family molecular chaperone K04083 hslO; molecular chaperone Hsp33 D BEN83_05245 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D BEN83_09100 heat-shock protein Hsp20 K13993 HSP20; HSP20 family protein D BEN83_07315 co-chaperone GroES K04078 groES; chaperonin GroES D BEN83_09840 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BEN83_00205 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D BEN83_02500 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BEN83_01920 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D BEN83_06165 peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D BEN83_10175 thioredoxin K03671 TXN; thioredoxin D BEN83_06245 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:lagl04131] D BEN83_00935 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BEN83_07390 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08095 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_04325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:lagl03032] D BEN83_01340 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BEN83_04285 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BEN83_04500 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D BEN83_09275 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D BEN83_09760 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BEN83_02925 hypothetical protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BEN83_03340 hypothetical protein K02315 dnaC; DNA replication protein DnaC D BEN83_04310 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D BEN83_06075 hypothetical protein K03346 dnaB; replication initiation and membrane attachment protein D BEN83_06070 primosomal protein DnaI K11144 dnaI; primosomal protein DnaI D BEN83_09240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BEN83_04335 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BEN83_06520 polC; PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D BEN83_09270 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BEN83_05555 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BEN83_01110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BEN83_07255 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BEN83_01080 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BEN83_04130 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D BEN83_06095 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BEN83_07555 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BEN83_09250 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D BEN83_09255 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D BEN83_04075 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BEN83_04080 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BEN83_04120 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BEN83_00030 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D BEN83_09305 hypothetical protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:lagl03036] D BEN83_06615 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BEN83_04500 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D BEN83_09275 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D BEN83_06610 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D BEN83_04245 rifampin ADP-ribosyl transferase K05896 scpA; segregation and condensation protein A D BEN83_04240 SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D BEN83_05730 cell division protein FtsA K03590 ftsA; cell division protein FtsA D BEN83_00185 hypothetical protein K13052 divIC; cell division protein DivIC D BEN83_07265 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BEN83_03170 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BEN83_06120 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D BEN83_06895 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D BEN83_05765 cell division protein FtsL K03586 ftsL; cell division protein FtsL D BEN83_05735 hypothetical protein K03589 ftsQ; cell division protein FtsQ D BEN83_05600 cell division protein K03588 ftsW; cell division protein FtsW D BEN83_07260 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D BEN83_05725 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BEN83_06260 cell division protein FtsZ K09888 zapA; cell division protein ZapA D BEN83_04785 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BEN83_02780 hypothetical protein K06286 ezrA; septation ring formation regulator D BEN83_05830 cell division inhibitor K03610 minC; septum site-determining protein MinC D BEN83_05825 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D BEN83_05705 cell division protein DivIVA K04074 divIVA; cell division initiation protein D BEN83_05720 hypothetical protein K09772 sepF; cell division inhibitor SepF D BEN83_05845 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D BEN83_02565 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D BEN83_05840 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D BEN83_05835 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D BEN83_02580 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D BEN83_08585 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BEN83_08590 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BEN83_04075 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BEN83_04080 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BEN83_09430 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D BEN83_08595 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BEN83_04115 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D BEN83_04105 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D BEN83_04255 site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D BEN83_06000 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein D BEN83_00910 DNA-binding protein WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:lagl03400] D BEN83_00990 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D BEN83_04620 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D BEN83_08735 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEN83_00420 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEN83_08605 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEN83_00565 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BEN83_07860 hypothetical protein K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BEN83_02735 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D BEN83_06090 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D BEN83_08360 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BEN83_06780 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BEN83_07555 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BEN83_06095 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BEN83_00890 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D BEN83_00885 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D BEN83_05330 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D BEN83_07560 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_08900 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_07920 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BEN83_10545 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BEN83_10550 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BEN83_10710 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BEN83_07755 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta D BEN83_06695 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BEN83_00170 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D BEN83_06430 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BEN83_06250 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D BEN83_06425 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D BEN83_05405 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D BEN83_05400 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D BEN83_04335 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BEN83_06520 polC; PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D BEN83_09270 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BEN83_05555 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BEN83_01110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BEN83_07255 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BEN83_01080 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BEN83_09240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BEN83_02940 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BEN83_00040 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BEN83_05650 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D BEN83_06860 recombinase RecA K03553 recA; recombination protein RecA D BEN83_06420 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D BEN83_06415 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D BEN83_06685 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D BEN83_02825 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D BEN83_02820 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D BEN83_00570 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D BEN83_09260 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D BEN83_06630 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D BEN83_03725 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D BEN83_01090 recombination protein RecR K06187 recR; recombination protein RecR D BEN83_05380 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BEN83_04610 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U D BEN83_02835 helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D BEN83_02830 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D BEN83_09250 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D BEN83_09255 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D BEN83_04120 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BEN83_04500 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D BEN83_03325 hypothetical protein K07455 recT; recombination protein RecT D BEN83_04525 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BEN83_00315 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BEN83_06295 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BEN83_05375 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BEN83_01210 recombination regulator RecX K03565 recX; regulatory protein D BEN83_04645 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BEN83_01050 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BEN83_01045 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BEN83_06290 oligoribonuclease K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:lagl03029] D BEN83_06495 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D BEN83_06060 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D BEN83_05335 translation elongation factor Ts K02357 tsf; elongation factor Ts D BEN83_05525 translation elongation factor Tu K02358 tuf; elongation factor Tu D BEN83_10570 translation elongation factor G K02355 fusA; elongation factor G D BEN83_03720 GTPase Era K03595 era; GTPase D BEN83_07970 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BEN83_02060 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BEN83_04765 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BEN83_02270 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BEN83_07540 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D BEN83_07530 aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D BEN83_07545 asparaginyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D BEN83_09240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BEN83_05240 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BEN83_05245 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D BEN83_07310 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BEN83_07315 co-chaperone GroES K04078 groES; chaperonin GroES D BEN83_05235 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D BEN83_02790 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_05675 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_09285 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_05490 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:lagl02000] D BEN83_09365 multidrug ABC transporter ATP-binding protein K18891 patA; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_09370 multidrug ABC transporter permease K18892 patB; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_07695 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_07690 multidrug ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D BEN83_09655 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D BEN83_09650 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D BEN83_00525 Lsa family ABC-F type ribosomal protection protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein D BEN83_04170 multidrug ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D BEN83_09695 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D BEN83_09690 spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein D BEN83_09685 spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D BEN83_09680 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D BEN83_08295 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D BEN83_08290 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D BEN83_00705 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BEN83_00680 sugar ABC transporter substrate-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D BEN83_00685 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D BEN83_00690 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D BEN83_09605 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D BEN83_09860 iron export ABC transporter permease subunit FetB K02069 STAR2; UDP-glucose/iron transport system permease protein D BEN83_09865 spermidine/putrescine ABC transporter ATP-binding protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D BEN83_01285 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BEN83_01290 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D BEN83_01295 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BEN83_01300 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BEN83_01305 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BEN83_09885 glutamine ABC transporter substrate-binding protein K10036 glnH; glutamine transport system substrate-binding protein D BEN83_02410 glutamine ABC transporter substrate-binding protein K10036 glnH; glutamine transport system substrate-binding protein D BEN83_02415 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D BEN83_10250 glutamine ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D BEN83_10255 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D BEN83_10260 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D BEN83_10245 amino acid ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D BEN83_05990 ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D BEN83_05985 glnQ; glutamine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D BEN83_02335 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BEN83_08935 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BEN83_02330 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D BEN83_08940 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D BEN83_02325 phosphate ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BEN83_08945 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BEN83_01355 peptide ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D BEN83_01350 branched-chain amino acid ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D BEN83_01345 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D BEN83_05810 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D BEN83_05820 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D BEN83_10215 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10280 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_06110 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_02840 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_08640 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_09035 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BEN83_10285 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D BEN83_10290 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BEN83_10295 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D BEN83_10300 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BEN83_02810 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component D BEN83_08395 ECF transporter S component K16924 mtsT; energy-coupling factor transport system substrate-specific component D BEN83_00750 hypothetical protein K16926 htsT; energy-coupling factor transport system substrate-specific component D BEN83_10730 cobalt ABC transporter ATP-binding protein K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_08020 ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_08385 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_00755 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein D BEN83_10720 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_10725 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_08390 heme ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_08015 ABC transporter K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_00760 hypothetical protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D BEN83_08010 ABC transporter permease K16925 ykoE; energy-coupling factor transport system permease protein D BEN83_08625 metal ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D BEN83_08635 ABC transporter K02075 ABC.ZM.P; zinc/manganese transport system permease protein D BEN83_08630 ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D BEN83_01245 hypothetical protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D BEN83_09395 bacitracin ABC transporter permease K19310 bcrB; bacitracin transport system permease protein D BEN83_09400 bacitracin ABC transporter ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein D BEN83_00730 hypothetical protein K19084 braE; bacitracin transport system permease protein D BEN83_00725 bacteriocin ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D BEN83_07260 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D BEN83_07265 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BEN83_03170 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BEN83_06145 hypothetical protein K25157 ecsB; ABC-2 type transport system permease protein D BEN83_06150 multidrug ABC transporter ATP-binding protein K25158 ecsA; ABC-2 type transport system ATP-binding protein D BEN83_08705 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D BEN83_00435 antibiotic ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D BEN83_01030 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D BEN83_08710 sodium ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D BEN83_00430 glycosyl transferase family 2 K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D BEN83_09055 sodium ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D BEN83_01025 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D BEN83_00080 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D BEN83_09340 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D BEN83_00875 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D BEN83_07705 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BEN83_07360 hypothetical protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BEN83_00085 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BEN83_09335 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BEN83_00870 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BEN83_02635 Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D BEN83_06315 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D BEN83_06210 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D BEN83_08450 galactoside permease K02532 lacY; MFS transporter, OHS family, lactose permease D BEN83_09110 MFS transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D BEN83_04855 transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D BEN83_09620 MFS transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D BEN83_09225 hypothetical protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D BEN83_02425 multidrug transporter subunit MdtG K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D BEN83_09910 multidrug MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein D BEN83_07160 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D BEN83_07165 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D BEN83_07430 PTS glucose/maltose transporter subunit IIBCA K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D BEN83_08955 PTS beta-glucoside transporter subunit EIIBCA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D BEN83_06445 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D BEN83_00595 PTS fructose transporter subunit IIB K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D BEN83_00585 PTS glucose transporter subunit IIA K02755 bglFa; beta-glucoside PTS system EIIA component [EC:2.7.1.-] D BEN83_09975 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D BEN83_09350 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D BEN83_09345 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D BEN83_06820 hypothetical protein K02761 celB; cellobiose PTS system EIIC component D BEN83_06920 PTS glucose transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D BEN83_09020 PTS fructose transporter subunit IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09015 PTS mannose transporter subunit EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D BEN83_09010 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D BEN83_09005 PTS mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D BEN83_08315 aquaporin K02440 glpF; glycerol uptake facilitator D BEN83_01415 aquaporin K02440 glpF; glycerol uptake facilitator D BEN83_07025 ammonia permease K03320 amt; ammonium transporter, Amt family D BEN83_08035 mechanosensitive ion channel protein MscL K03282 mscL; large conductance mechanosensitive channel D BEN83_01435 mechanosensitive ion channel protein MscS K22044 ybiO; moderate conductance mechanosensitive channel D BEN83_06955 magnesium transporter K06213 mgtE; magnesium transporter D BEN83_03025 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D BEN83_03030 hypothetical protein K02557 motB; chemotaxis protein MotB D BEN83_10185 hypothetical protein K06199 crcB; fluoride exporter D BEN83_10190 hypothetical protein K06199 crcB; fluoride exporter D BEN83_01250 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BEN83_08930 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D BEN83_02385 PTS sugar transporter subunit IIA K16209 lacS; lactose/raffinose/galactose permease D BEN83_10435 gamma-aminobutyrate permease K11733 lysP; lysine-specific permease D BEN83_09445 amino acid permease K16235 mmuP; S-methylmethionine transporter D BEN83_00510 quaternary ammonium transporter K03297 emrE; small multidrug resistance pump D BEN83_01400 glucose transporter GlcU K05340 glcU; glucose uptake protein D BEN83_09325 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D BEN83_06915 glutamate/aspartate:proton symporter GltP K11102 gltP; proton glutamate symport protein D BEN83_06200 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family D BEN83_07680 K+/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter D BEN83_10220 sodium:proton antiporter K26730 napA; Na+:H+ antiporter D BEN83_02190 potassium transporter KtrB K03498 trkH; trk/ktr system potassium uptake protein D BEN83_02195 potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein D BEN83_03640 uracil permease K02824 uraA; uracil permease D BEN83_04780 Uric acid permease PucJ K16169 pbuX; xanthine permease D BEN83_07720 guanine permease K06901 pbuG; adenine/guanine/hypoxanthine permease D BEN83_09780 nucleoside permease K16323 yxjA; purine nucleoside transport protein D BEN83_00955 ClC family H(+)/Cl(-) exchange transporter K03281 clcA; chloride channel protein, CIC family D BEN83_04535 divalent metal cation transporter K03322 mntH; manganese transport protein D BEN83_00740 divalent metal cation transporter K03322 mntH; manganese transport protein D BEN83_08520 malate permease K24180 mleP; malate permease and related proteins D BEN83_07410 malate transporter K24180 mleP; malate permease and related proteins D BEN83_04385 transporter K24180 mleP; malate permease and related proteins D BEN83_10335 branched-chain amino acid ABC transporter K26605 azlC; branched chain amino acid efflux pump D BEN83_10340 branched-chain amino acid transporter K26606 azlD; branched chain amino acid efflux pump D BEN83_05310 branched-chain amino acid ABC transporter K26606 azlD; branched chain amino acid efflux pump D BEN83_04230 ECF transporter S component K23675 fmnP; riboflavin transporter D BEN83_10855 hypothetical protein K22736 VIT; vacuolar iron transporter family protein D BEN83_10850 hypothetical protein K22736 VIT; vacuolar iron transporter family protein D BEN83_05600 cell division protein K03588 ftsW; cell division protein FtsW D BEN83_05180 exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D BEN83_05185 chain-length determining protein K19420 epsA; protein tyrosine kinase modulator D BEN83_02365 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter D BEN83_00375 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter D BEN83_05280 iron transporter FeoA K04758 feoA; ferrous iron transport protein A D BEN83_05285 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:lagl02044] D BEN83_05715 cell division protein K02221 yggT; YggT family protein D BEN83_05570 hypothetical protein K02237 comEA; competence protein ComEA D BEN83_05565 ComE operon protein 2 K01493 comEB; dCMP deaminase [EC:3.5.4.12] D BEN83_05560 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D BEN83_07290 DNA/RNA helicase K02240 comFA; competence protein ComFA D BEN83_07285 hypothetical protein K02242 comFC; competence protein ComFC D BEN83_01520 competence protein ComG K02243 comGA; competence protein ComGA D BEN83_01525 competence protein ComG K02244 comGB; competence protein ComGB D BEN83_01860 hypothetical protein K02245 comGC; competence protein ComGC D BEN83_01865 hypothetical protein K02246 comGD; competence protein ComGD D BEN83_10555 hypothetical protein K02236 comC; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D BEN83_03150 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BEN83_03145 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB D BEN83_03075 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BEN83_03085 hypothetical protein K02411 fliH; flagellar assembly protein FliH D BEN83_03090 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BEN83_03225 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D BEN83_03125 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D BEN83_03130 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BEN83_03135 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BEN83_03140 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BEN83_07275 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_09490 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BEN83_00795 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BEN83_00960 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BEN83_10680 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BEN83_09470 accessory Sec system protein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY D BEN83_06595 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BEN83_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BEN83_06400 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BEN83_09285 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_05490 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D BEN83_09475 accessory Sec system protein Asp1 K12268 asp1; accessory secretory protein Asp1 D BEN83_09480 accessory Sec system protein Asp2 K12269 asp2; accessory secretory protein Asp2 D BEN83_09485 accessory Sec system protein Asp3 K12270 asp3; accessory secretory protein Asp3 C 02042 Bacterial toxins [BR:lagl02042] D BEN83_01250 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BEN83_08930 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D BEN83_01330 hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:lagl02022] D BEN83_00835 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BEN83_00830 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D BEN83_09815 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D BEN83_09810 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D BEN83_00720 hypothetical protein K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D BEN83_00710 DNA-binding response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D BEN83_05495 two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D BEN83_05500 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D BEN83_01385 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D BEN83_01035 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D BEN83_01040 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D BEN83_09050 hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02585 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D BEN83_02590 DNA-binding response regulator K07707 agrA; two-component system, LytTR family, response regulator AgrA D BEN83_09045 hypothetical protein K07707 agrA; two-component system, LytTR family, response regulator AgrA D BEN83_03200 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BEN83_03210 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BEN83_03190 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:lagl02035] D BEN83_03200 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BEN83_03180 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BEN83_03215 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D BEN83_03205 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D BEN83_03185 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D BEN83_03195 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BEN83_03190 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BEN83_03210 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BEN83_00580 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_00620 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_01515 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_10745 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_02625 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03045 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03175 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BEN83_03085 hypothetical protein K02411 fliH; flagellar assembly protein FliH D BEN83_03090 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BEN83_03095 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D BEN83_03125 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D BEN83_03130 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BEN83_03135 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BEN83_03140 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BEN83_03150 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BEN83_03145 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB D BEN83_03080 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BEN83_03220 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BEN83_03225 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D BEN83_03075 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BEN83_03120 hypothetical protein K02415 fliL; flagellar protein FliL D BEN83_03070 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D BEN83_03060 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D BEN83_03065 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D BEN83_03105 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D BEN83_03160 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF D BEN83_03165 hypothetical protein K02392 flgG; flagellar basal-body rod protein FlgG D BEN83_03110 flgG; flagellar basal body rod protein FlgG K02390 flgE; flagellar hook protein FlgE D BEN83_03240 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D BEN83_03245 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D BEN83_03595 hypothetical protein K02406 fliC; flagellin D BEN83_03600 flagellin K02406 fliC; flagellin D BEN83_03255 hypothetical protein K02407 fliD; flagellar hook-associated protein 2 D BEN83_03265 flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D BEN83_03155 RNA polymerase K02405 fliA; RNA polymerase sigma factor FliA D BEN83_03025 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D BEN83_03030 hypothetical protein K02557 motB; chemotaxis protein MotB D BEN83_03230 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D BEN83_03115 endoflagellar protein K02385 flbD; flagellar protein FlbD C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:lagl04812] D BEN83_05845 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D BEN83_02565 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D BEN83_05725 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BEN83_05730 cell division protein FtsA K03590 ftsA; cell division protein FtsA D BEN83_05830 cell division inhibitor K03610 minC; septum site-determining protein MinC D BEN83_05825 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D BEN83_08585 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BEN83_08590 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:lagl04147] D BEN83_00950 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BEN83_00935 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BEN83_00940 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BEN83_04325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BEN83_07310 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BEN83_05240 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BEN83_01405 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BEN83_08915 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D BEN83_05525 translation elongation factor Tu K02358 tuf; elongation factor Tu D BEN83_06155 histidine triad protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D BEN83_07615 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_00160 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D BEN83_08700 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BEN83_10690 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D BEN83_06775 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BEN83_08485 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BEN83_08490 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BEN83_07215 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D BEN83_08325 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D BEN83_06710 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BEN83_08660 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BEN83_02240 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BEN83_09935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BEN83_06300 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BEN83_00945 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BEN83_07390 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BEN83_08095 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:lagl02048] D BEN83_03005 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D BEN83_02875 hypothetical protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D BEN83_01720 endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D BEN83_08760 restriction endonuclease K07448 mrr; restriction system protein D BEN83_02545 mRNA-degrading endonuclease K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D BEN83_03760 transcriptional regulator K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D BEN83_00140 PemK family transcriptional regulator K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D BEN83_02540 hypothetical protein K07172 mazE; antitoxin MazE D BEN83_08525 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1 D BEN83_05725 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BEN83_05845 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D BEN83_02565 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D BEN83_04075 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BEN83_04080 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BEN83_02790 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BEN83_05675 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:lagl01504] D BEN83_08800 tetracycline resistance ribosomal protection protein K18220 tetM; ribosomal protection tetracycline resistance protein D BEN83_04110 elongation factor G K18220 tetM; ribosomal protection tetracycline resistance protein D BEN83_00525 Lsa family ABC-F type ribosomal protection protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein D BEN83_07000 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D BEN83_06840 D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D BEN83_06835 D-alanyl-lipoteichoic acid biosynthesis protein DltB K03739 dltB; membrane protein involved in D-alanine export D BEN83_06830 D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D BEN83_06825 D-alanyl-lipoteichoic acid biosynthesis protein DltD K03740 dltD; D-alanine transfer protein D BEN83_01005 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:lagl03100] D BEN83_00230 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_01935 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_07955 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_10480 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BEN83_00920 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_07645 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_01985 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_05935 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_10520 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_05460 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BEN83_00245 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_01950 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_07115 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_08175 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BEN83_02015 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_02045 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_04710 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_05915 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_07095 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BEN83_05885 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BEN83_07065 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BEN83_00285 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_05890 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_07070 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_02405 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BEN83_00250 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_01955 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_02035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_07105 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_06220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BEN83_02020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_01975 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_02265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_05945 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_07935 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_10510 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BEN83_05895 tRNA-His K14226 tRNA-His; tRNA His D BEN83_07080 tRNA-His K14226 tRNA-His; tRNA His D BEN83_02025 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BEN83_07960 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BEN83_10475 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BEN83_05955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_01980 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_05940 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_10515 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_04720 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_05880 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_07060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_00330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_02100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BEN83_09790 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_09795 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_01965 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_05960 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_10500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BEN83_02010 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_01995 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_02000 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_02040 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_05925 tRNA-Met K14230 tRNA-Met; tRNA Met D BEN83_04705 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BEN83_05910 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BEN83_07090 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BEN83_01990 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_10530 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_05930 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_10525 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BEN83_02030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_02005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_04715 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_05920 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_07110 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_04970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BEN83_01970 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_05950 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_10505 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_07630 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_00255 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_07925 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BEN83_04700 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BEN83_05900 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BEN83_00280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BEN83_05905 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BEN83_07085 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BEN83_01960 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_05965 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_07100 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_07940 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_10495 tRNA-Val K14237 tRNA-Val; tRNA Val D BEN83_10470 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_01930 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_05980 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_08260 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_08995 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_00225 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BEN83_07125 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_01940 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_05975 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_08255 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_08990 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_00235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_07950 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_10485 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BEN83_01945 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_07120 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_08985 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_10490 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_00240 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_05970 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_08250 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_07945 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BEN83_01075 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D BEN83_04595 rnpB; RNase P RNA component class B K01978 rnpB; M1 RNA D BEN83_01370 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D BEN83_10845 NADPH dehydrogenase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D BEN83_04760 peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D BEN83_08975 peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D BEN83_02710 2-Cys peroxiredoxin K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D BEN83_08005 peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D BEN83_01915 ferredoxin--NADP(+) reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D BEN83_10805 phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D BEN83_02785 ArsC family transcriptional regulator K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D BEN83_07010 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D BEN83_01265 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D BEN83_00045 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D BEN83_04590 RNA methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D BEN83_08190 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D BEN83_06395 hypothetical protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D BEN83_00025 acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D BEN83_08090 hypothetical protein K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D BEN83_00855 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D BEN83_09290 thiamine biosynthesis protein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D BEN83_06635 hypothetical protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D BEN83_03685 phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D BEN83_08565 hypothetical protein K18967 dge1; diguanylate cyclase [EC:2.7.7.65] D BEN83_07240 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D BEN83_00850 HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D BEN83_08330 hypothetical protein K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22] D BEN83_00425 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D BEN83_08895 hypothetical protein K23978 IAH1; isoamyl acetate esterase [EC:3.1.1.112] D BEN83_09420 hypothetical protein K03930 estA; putative tributyrin esterase [EC:3.1.1.-] D BEN83_06320 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D BEN83_08925 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D BEN83_05175 tyrosine protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D BEN83_06045 HAD family hydrolase K07015 yqeG; putative phosphatase [EC:3.1.3.-] D BEN83_09750 hypothetical protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D BEN83_07875 hydrolase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D BEN83_07870 ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D BEN83_00700 glucohydrolase K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70] D BEN83_01795 holin K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BEN83_03485 holin K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BEN83_04050 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D BEN83_05620 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D BEN83_08380 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53] D BEN83_08695 ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D BEN83_04580 copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D BEN83_09600 cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D BEN83_01475 Fe-S oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE D BEN83_01480 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D BEN83_01485 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D BEN83_02650 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism D BEN83_04065 fatty acid-binding protein DegV K25232 fakB; fatty acid kinase fatty acid binding subunit D BEN83_10165 fatty acid-binding protein DegV K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism D BEN83_01055 ribonucleotide reductase stimulatory protein K03647 nrdI; protein involved in ribonucleotide reduction D BEN83_07340 hydroxyacid dehydrogenase K15051 endA; DNA-entry nuclease D BEN83_08420 hypothetical protein K15051 endA; DNA-entry nuclease C 99985 Amino acid metabolism D BEN83_09155 glyoxalase K08234 yaeR; glyoxylase I family protein C 99986 Glycan metabolism D BEN83_07145 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D BEN83_04250 RibT protein K02859 ribT; riboflavin biosynthesis RibT protein D BEN83_09040 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D BEN83_05850 cold-shock protein K03704 cspA; cold shock protein D BEN83_10375 cold-shock protein K03704 cspA; cold shock protein D BEN83_06995 transcriptional regulator Spx K16509 spxA; regulatory protein spx D BEN83_00320 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D BEN83_01925 general stress protein K07570 GSP13; general stress protein 13 D BEN83_00190 RNA-binding protein S1 K07571 K07571; S1 RNA binding domain protein C 99975 Protein processing D BEN83_05520 trigger factor K03545 tig; trigger factor D BEN83_00970 SsrA-binding protein K03664 smpB; SsrA-binding protein D BEN83_01060 NrdH-redoxin K06191 nrdH; glutaredoxin-like protein NrdH D BEN83_06990 adaptor protein MecA K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D BEN83_01185 resolvase K07450 K07450; putative resolvase D BEN83_05855 hypothetical protein K03630 radC; DNA repair protein RadC D BEN83_03810 hypothetical protein K03630 radC; DNA repair protein RadC D BEN83_05350 hypothetical protein K07461 K07461; putative endonuclease D BEN83_04125 DNA protecting protein DprA K04096 smf; DNA processing protein D BEN83_04625 hypothetical protein K02086 dnaD; DNA replication protein D BEN83_03400 terminase K07474 xtmA; phage terminase small subunit D BEN83_03405 terminase K06909 xtmB; phage terminase large subunit D BEN83_02755 recombinase RarA K07478 ycaJ; putative ATPase D BEN83_01615 hypothetical protein K06919 K06919; putative DNA primase/helicase D BEN83_04920 hypothetical protein K06919 K06919; putative DNA primase/helicase D BEN83_05035 integrase K07482 K07482; transposase, IS30 family D BEN83_05515 integrase K07482 K07482; transposase, IS30 family D BEN83_09995 hypothetical protein K07482 K07482; transposase, IS30 family D BEN83_10780 hypothetical protein K07483 K07483; transposase D BEN83_06935 transposase K07483 K07483; transposase D BEN83_07420 transposase K07483 K07483; transposase D BEN83_08270 transposase K07483 K07483; transposase D BEN83_08470 transposase K07483 K07483; transposase D BEN83_08495 transposase K07483 K07483; transposase D BEN83_08745 transposase K07483 K07483; transposase D BEN83_08795 transposase K07483 K07483; transposase D BEN83_08830 transposase K07483 K07483; transposase D BEN83_04880 transposase K07483 K07483; transposase D BEN83_05025 transposase K07483 K07483; transposase D BEN83_05260 transposase K07483 K07483; transposase D BEN83_00670 transposase K07483 K07483; transposase D BEN83_05075 transposase K07483 K07483; transposase D BEN83_05210 transposase K07483 K07483; transposase D BEN83_10830 hypothetical protein K07483 K07483; transposase D BEN83_07040 transposase K07483 K07483; transposase D BEN83_07620 transposase K07483 K07483; transposase D BEN83_08050 transposase K07483 K07483; transposase D BEN83_05090 transposase K07484 K07484; transposase D BEN83_07480 transposase K07484 K07484; transposase D BEN83_07490 transposase K07484 K07484; transposase D BEN83_04550 transposase K07484 K07484; transposase D BEN83_09200 transposase K07485 K07485; transposase D BEN83_09455 transposase K07485 K07485; transposase D BEN83_05645 transposase K07485 K07485; transposase D BEN83_10020 hypothetical protein K07485 K07485; transposase D BEN83_02285 hypothetical protein K07485 K07485; transposase D BEN83_03040 transposase K07485 K07485; transposase D BEN83_07395 transposase K07485 K07485; transposase D BEN83_08145 transposase K07485 K07485; transposase D BEN83_06310 transposase K07491 rayT; REP-associated tyrosine transposase D BEN83_05300 tranposase K07491 rayT; REP-associated tyrosine transposase D BEN83_01325 transposase K07496 K07496; putative transposase D BEN83_07535 transposase K07496 K07496; putative transposase D BEN83_08505 transposase K07496 K07496; putative transposase D BEN83_08555 transposase K07496 K07496; putative transposase D BEN83_00265 transposase K07496 K07496; putative transposase D BEN83_00350 transposase K07496 K07496; putative transposase D BEN83_06305 transposase K07496 K07496; putative transposase D BEN83_02165 transposase K07496 K07496; putative transposase D BEN83_03645 transposase K07496 K07496; putative transposase D BEN83_05305 transposase K07496 K07496; putative transposase D BEN83_09785 transposase K07496 K07496; putative transposase D BEN83_02720 transposase K07496 K07496; putative transposase D BEN83_00415 transposase K07496 K07496; putative transposase D BEN83_00805 transposase K07496 K07496; putative transposase D BEN83_01020 transposase K07496 K07496; putative transposase D BEN83_09570 transposase K07496 K07496; putative transposase D BEN83_01190 transposase K07496 K07496; putative transposase D BEN83_01455 transposase K07496 K07496; putative transposase D BEN83_10180 transposase K07496 K07496; putative transposase D BEN83_10305 transposase K07496 K07496; putative transposase D BEN83_02895 transposase K07496 K07496; putative transposase D BEN83_07580 transposase K07496 K07496; putative transposase D BEN83_07995 transposase K07496 K07496; putative transposase D BEN83_04215 transposase K07496 K07496; putative transposase D BEN83_08645 transposase K07496 K07496; putative transposase D BEN83_00095 transposase K07496 K07496; putative transposase D BEN83_04875 transposase K07497 K07497; putative transposase D BEN83_00675 integrase K07497 K07497; putative transposase D BEN83_05020 transposase K07497 K07497; putative transposase D BEN83_05080 integrase K07497 K07497; putative transposase D BEN83_05215 integrase K07497 K07497; putative transposase D BEN83_05265 transposase K07497 K07497; putative transposase D BEN83_10770 transposase K07497 K07497; putative transposase D BEN83_06930 transposase K07497 K07497; putative transposase D BEN83_07045 integrase K07497 K07497; putative transposase D BEN83_07415 transposase K07497 K07497; putative transposase D BEN83_07625 integrase K07497 K07497; putative transposase D BEN83_08055 integrase K07497 K07497; putative transposase D BEN83_08265 transposase K07497 K07497; putative transposase D BEN83_08475 transposase K07497 K07497; putative transposase D BEN83_08500 transposase K07497 K07497; putative transposase D BEN83_08750 transposase K07497 K07497; putative transposase D BEN83_08825 transposase K07497 K07497; putative transposase D BEN83_08305 transposase K07498 K07498; putative transposase D BEN83_10825 integrase K14059 int; integrase C 99979 Viral proteins C 99998 Others D BEN83_01085 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D BEN83_01890 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D BEN83_02070 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D BEN83_01375 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D BEN83_10225 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D BEN83_10265 serine/threonine protein kinase K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D BEN83_02135 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D BEN83_05055 carnitine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D BEN83_00275 peptide ABC transporter permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D BEN83_00150 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D BEN83_00395 anion permease K03319 TC.DASS; divalent anion:Na+ symporter, DASS family C 99978 Cell growth D BEN83_09185 hypothetical protein K06346 jag; spoIIIJ-associated protein D BEN83_01530 hypothetical protein K06400 spoIVCA; site-specific DNA recombinase C 99993 Cell motility C 99995 Signaling proteins D BEN83_05605 GTP-binding protein TypA K06207 typA; GTP-binding protein D BEN83_09955 hypothetical protein K07166 K07166; ACT domain-containing protein D BEN83_03705 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D BEN83_09330 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein C 99994 Others D BEN83_01310 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D BEN83_06205 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein B B 09194 Poorly characterized C 99996 General function prediction only D BEN83_06985 hypothetical protein K06198 coiA; competence protein CoiA D BEN83_06125 tRNA-binding protein K06878 K06878; tRNA-binding protein D BEN83_02655 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D BEN83_02640 Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D BEN83_07980 TcpI protein K07038 K07038; inner membrane protein D BEN83_01205 ribonuclease BN K07058 K07058; membrane protein D BEN83_00105 hypothetical protein K03744 lemA; LemA protein D BEN83_00325 SprT family protein K03095 sprL; SprT-like protein D BEN83_01910 cytochrome O ubiquinol oxidase K03975 dedA; membrane-associated protein D BEN83_08905 hypothetical protein K03975 dedA; membrane-associated protein D BEN83_10325 hypothetical protein K01421 yhgE; putative membrane protein D BEN83_00845 hypothetical protein K08972 K08972; putative membrane protein D BEN83_00625 hypothetical protein K08987 K08987; putative membrane protein D BEN83_01280 hypothetical protein K08996 yagU; putative membrane protein D BEN83_01200 phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE C 99997 Function unknown D BEN83_07765 hypothetical protein K06885 K06885; uncharacterized protein D BEN83_05800 alpha/beta hydrolase K06889 K06889; uncharacterized protein D BEN83_04685 S9 family serine peptidase K06889 K06889; uncharacterized protein D BEN83_06100 hypothetical protein K06890 K06890; uncharacterized protein D BEN83_00445 Fe-S-oxidoreductase K06940 K06940; uncharacterized protein D BEN83_02970 HAD family hydrolase K06950 K06950; uncharacterized protein D BEN83_08615 phosphohydrolase K06950 K06950; uncharacterized protein D BEN83_06585 RNA-binding protein K06960 K06960; uncharacterized protein D BEN83_00785 DNA-binding protein K06962 K06962; uncharacterized protein D BEN83_00560 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein D BEN83_07845 hypothetical protein K07035 K07035; uncharacterized protein D BEN83_09220 hypothetical protein K07035 K07035; uncharacterized protein D BEN83_07035 nitroreductase K07078 K07078; uncharacterized protein D BEN83_10795 permease K07089 K07089; uncharacterized protein D BEN83_10405 permease K07090 K07090; uncharacterized protein D BEN83_06225 YfcE family phosphodiesterase K07095 K07095; uncharacterized protein D BEN83_08075 phosphoesterase K07097 K07097; uncharacterized protein D BEN83_06785 short-chain dehydrogenase K07124 K07124; uncharacterized protein D BEN83_00500 hypothetical protein K07150 K07150; uncharacterized protein D BEN83_02570 membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D BEN83_03700 hypothetical protein K09117 K09117; uncharacterized protein D BEN83_09960 hypothetical protein K09157 K09157; uncharacterized protein D BEN83_06475 ATP-dependent exonuclease K09384 K09384; uncharacterized protein D BEN83_07465 hypothetical protein K09702 K09702; uncharacterized protein D BEN83_06600 DNA-binding protein K09787 K09787; uncharacterized protein D BEN83_00035 hypothetical protein K09790 K09790; uncharacterized protein D BEN83_04260 DNA-binding protein K00243 K00243; uncharacterized protein D BEN83_04200 hypothetical protein K09861 K09861; uncharacterized protein D BEN83_02140 hypothetical protein K09962 K09962; uncharacterized protein D BEN83_04005 hypothetical protein K09962 K09962; uncharacterized protein D BEN83_05365 hypothetical protein K09976 K09976; uncharacterized protein D BEN83_05445 hypothetical protein K07584 ysxB; uncharacterized protein D BEN83_01220 hypothetical protein K07586 ygaC; uncharacterized protein D BEN83_06505 DNA-binding protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 25, 2024