+F Repair protein KO
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DNA Repair and Recombination Proteins - Lactobacillus amylovorus 30SC
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LAC30SC_01180 S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LAC30SC_00540 methylated-DNA-protein-cysteineS-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E LAC30SC_03525 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LAC30SC_00525 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E LAC30SC_06185 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D LAC30SC_06330 putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LAC30SC_02275 mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LAC30SC_08675 hydrolase, MutT/Nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LAC30SC_01705 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LAC30SC_01180 S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LAC30SC_00540 methylated-DNA-protein-cysteineS-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E LAC30SC_03525 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LAC30SC_07190 Uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E LAC30SC_00525 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E LAC30SC_00710 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E LAC30SC_08375 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E LAC30SC_06185 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E LAC30SC_00240 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E LAC30SC_06970 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E LAC30SC_02760 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E LAC30SC_08380 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E LAC30SC_03440 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E LAC30SC_05830 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E LAC30SC_03435 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E LAC30SC_04755 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E LAC30SC_02755 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LAC30SC_09075 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LAC30SC_08380 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E LAC30SC_02760 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F LAC30SC_01385 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F LAC30SC_01390 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F LAC30SC_01555 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F LAC30SC_01115 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F LAC30SC_07390 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F LAC30SC_01280 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E LAC30SC_02075 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E LAC30SC_05295 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
E LAC30SC_02140 DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E LAC30SC_02080 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E LAC30SC_07430 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E LAC30SC_07425 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E LAC30SC_04800 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E LAC30SC_07050 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E LAC30SC_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E LAC30SC_04215 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E LAC30SC_01905 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E LAC30SC_03555 DNA polymerase III alpha chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LAC30SC_08940 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LAC30SC_01875 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E LAC30SC_02760 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E LAC30SC_02755 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LAC30SC_09075 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LAC30SC_00040 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E LAC30SC_10905 putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E LAC30SC_10935 very-short-patch-repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E LAC30SC_04130 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E LAC30SC_03330 recA; recombinase A K03553 recA; recombination protein RecA
E LAC30SC_02085 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E LAC30SC_02090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LAC30SC_07385 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E LAC30SC_03330 recA; recombinase A K03553 recA; recombination protein RecA
E LAC30SC_01710 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E LAC30SC_00020 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E LAC30SC_00600 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E LAC30SC_07325 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E LAC30SC_06970 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LAC30SC_06360 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E LAC30SC_01885 recR; recombination protein RecR K06187 recR; recombination protein RecR
E LAC30SC_07410 DNA repair protein recn K03631 recN; DNA repair protein RecN (Recombination protein N)
E LAC30SC_06175 recU; Holliday junction-specific endonuclease K03700 recU; recombination protein U
E LAC30SC_02085 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E LAC30SC_02090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E LAC30SC_06210 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E LAC30SC_06215 ATP-dependent exonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F LAC30SC_00030 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F LAC30SC_00025 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F LAC30SC_04935 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F LAC30SC_04870 DNA-binding protein II HB K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F LAC30SC_06970 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F LAC30SC_06360 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F LAC30SC_01885 recR; recombination protein RecR K06187 recR; recombination protein RecR
F LAC30SC_02760 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F LAC30SC_05040 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LAC30SC_03440 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F LAC30SC_05830 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F LAC30SC_03435 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D LAC30SC_02105 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D LAC30SC_02660 Nucleotidyltransferase/DNA polymerase for DNA repair K03502 umuC; DNA polymerase V
C Other SOS response factors
D LAC30SC_03330 recA; recombinase A K03553 recA; recombination protein RecA
D LAC30SC_07180 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D LAC30SC_07410 DNA repair protein recn K03631 recN; DNA repair protein RecN (Recombination protein N)
D LAC30SC_00040 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LAC30SC_10905 putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LAC30SC_03170 recX; recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D LAC30SC_05205 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D LAC30SC_06205 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D LAC30SC_02450 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D LAC30SC_06330 putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LAC30SC_02275 mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LAC30SC_08675 hydrolase, MutT/Nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LAC30SC_01705 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
D LAC30SC_02110 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024