+E Transcription factors KO
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Transcription Factors - Lacimicrobium alkaliphilum
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D AT746_02025 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D AT746_00540 hypothetical protein K07506 K07506; AraC family transcriptional regulator
D AT746_08330 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AT746_00105 hypothetical protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D AT746_07575 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AT746_07810 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AT746_19290 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D AT746_03340 hypothetical protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D AT746_11915 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D AT746_14690 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AT746_10435 cysB; LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D AT746_10450 hypothetical protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D AT746_05610 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D AT746_07120 hypothetical protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
C DeoR family
D AT746_10660 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D AT746_09720 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AT746_02865 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AT746_17130 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AT746_16965 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D AT746_17670 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D AT746_00520 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D AT746_17005 hypothetical protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D AT746_12315 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D AT746_16090 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AT746_01835 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AT746_15700 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AT746_03570 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D AT746_18790 TetR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D AT746_00805 hypothetical protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D AT746_18795 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AT746_08340 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AT746_12465 GntR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D AT746_09045 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AT746_00915 hypothetical protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D AT746_05835 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
C MerR family
D AT746_14365 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AT746_11190 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D AT746_10845 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D AT746_11645 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AT746_12555 XRE family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D AT746_09675 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D AT746_14515 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D AT746_15045 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AT746_06030 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D AT746_04270 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D AT746_15670 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D AT746_02965 hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D AT746_07970 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D AT746_02090 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D AT746_01885 penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D AT746_02575 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AT746_17225 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AT746_07755 DNA-binding protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D AT746_12760 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D AT746_07080 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D AT746_10870 transcriptional regulator K07726 K07726; putative transcriptional regulator
D AT746_08735 DNA-binding protein K07726 K07726; putative transcriptional regulator
D AT746_06570 DNA-binding protein K07726 K07726; putative transcriptional regulator
D AT746_08855 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator
D AT746_11500 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D AT746_11850 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D AT746_02170 transcriptional regulator K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D AT746_15455 pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D AT746_06995 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D AT746_03810 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D AT746_19075 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AT746_03710 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D AT746_05805 TyrR family transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D AT746_09360 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D AT746_05765 AAA family ATPase K03974 pspF; psp operon transcriptional activator
D AT746_05780 phage shock protein C K03973 pspC; phage shock protein C
D AT746_12535 hypothetical protein K03973 pspC; phage shock protein C
D AT746_15545 transcription elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase
D AT746_07460 transcriptional regulator K07734 paiB; transcriptional regulator
D AT746_15815 hypothetical protein K07735 algH; putative transcriptional regulator
D AT746_02290 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D AT746_13755 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D AT746_16275 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0