+E Transcription factors KO #

  Transcription Factors - Lacimicrobium alkaliphilum

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AT746_02025 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AT746_00540 hypothetical protein K07506 K07506; AraC family transcriptional regulator D AT746_08330 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AT746_00105 hypothetical protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D AT746_07575 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AT746_07810 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AT746_19290 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D AT746_03340 hypothetical protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D AT746_11915 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D AT746_14690 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AT746_10435 cysB; LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D AT746_10450 hypothetical protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D AT746_05610 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D AT746_07120 hypothetical protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon C DeoR family D AT746_10660 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor C LacI family D AT746_09720 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AT746_02865 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AT746_17130 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AT746_16965 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D AT746_17670 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D AT746_00520 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AT746_17005 hypothetical protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D AT746_12315 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D AT746_16090 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AT746_01835 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AT746_15700 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AT746_03570 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D AT746_18790 TetR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D AT746_00805 hypothetical protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D AT746_18795 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AT746_08340 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AT746_12465 GntR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D AT746_09045 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AT746_00915 hypothetical protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D AT746_05835 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family C MarR family C MerR family D AT746_14365 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D AT746_11190 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D AT746_10845 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator C Fur family D AT746_11645 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AT746_12555 XRE family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D AT746_09675 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D AT746_14515 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D AT746_15045 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AT746_06030 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D AT746_04270 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family D AT746_15670 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D AT746_02965 hypothetical protein K10947 K10947; PadR family transcriptional regulator C Other families D AT746_07970 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AT746_02090 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AT746_01885 penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D AT746_02575 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AT746_17225 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D AT746_07755 DNA-binding protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AT746_12760 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D AT746_07080 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D AT746_10870 transcriptional regulator K07726 K07726; putative transcriptional regulator D AT746_08735 DNA-binding protein K07726 K07726; putative transcriptional regulator D AT746_06570 DNA-binding protein K07726 K07726; putative transcriptional regulator D AT746_08855 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator D AT746_11500 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D AT746_11850 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D AT746_02170 transcriptional regulator K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D AT746_15455 pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D AT746_06995 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D AT746_03810 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D AT746_19075 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AT746_03710 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism D AT746_05805 TyrR family transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D AT746_09360 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D AT746_05765 AAA family ATPase K03974 pspF; psp operon transcriptional activator D AT746_05780 phage shock protein C K03973 pspC; phage shock protein C D AT746_12535 hypothetical protein K03973 pspC; phage shock protein C D AT746_15545 transcription elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase D AT746_07460 transcriptional regulator K07734 paiB; transcriptional regulator D AT746_15815 hypothetical protein K07735 algH; putative transcriptional regulator D AT746_02290 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor D AT746_13755 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D AT746_16275 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0