+F Repair protein KO
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DNA Repair and Recombination Proteins - Lycium barbarum (goji berry)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 132615856 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 132600379 DExH-box ATP-dependent RNA helicase DExH14 isoform X1 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 132635039 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 132623330 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 132607374 DNA-3-methyladenine glycosylase isoform X1 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 132631421 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 132622336 methyl-CpG-binding domain protein 4-like protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 132627140 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 132632751 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132603279 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132608870 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132608871 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132609058 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 132617502 DNA-(apurinic or apyrimidinic site) endonuclease 2 isoform X1 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 132607300 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 132635803 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 132629155 uncharacterized protein LOC132629155 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
F 132610808 uncharacterized protein LOC132610808 K03505 POLD4; DNA polymerase delta subunit 4
F 132639142 uncharacterized protein LOC132639142 K03505 POLD4; DNA polymerase delta subunit 4
F 132640293 uncharacterized protein LOC132640293 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 132600566 DNA polymerase epsilon catalytic subunit A-like isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 132610504 DNA polymerase epsilon subunit B-like K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 132632375 DNA polymerase epsilon subunit B-like K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 132627775 DNA polymerase epsilon subunit B-like K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 132600595 DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 132605998 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 132598533 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 132600477 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 132598484 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 132620354 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 132630876 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 132616790 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 132641410 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 132610646 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 132628740 poly [ADP-ribose] polymerase 2-like K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 132600577 protein ADP-ribosyltransferase PARP3-like isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 132635519 poly [ADP-ribose] polymerase 2 isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 132626255 protein ADP-ribosyltransferase PARP3-like isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 132613927 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 132612614 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 132633105 ubiquitin receptor RAD23b isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 132621063 ubiquitin receptor RAD23d-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 132621665 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 132633526 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 132636921 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 132645335 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 132621551 cullin-4-like K10609 CUL4; cullin 4
F 132640306 cullin-4-like isoform X1 K10609 CUL4; cullin 4
F 132631575 DNA damage-binding protein 1 isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 132631605 protein DAMAGED DNA-BINDING 2 isoform X1 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 132617078 uncharacterized protein LOC132617078 K15082 RAD7; DNA repair protein RAD7
F 132635987 uncharacterized protein LOC132635987 isoform X1 K15082 RAD7; DNA repair protein RAD7
F 132618966 DNA repair protein RAD16-like K15083 RAD16; DNA repair protein RAD16
F 132640573 DNA repair protein RAD16 isoform X1 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 132621433 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 132638646 DNA-directed RNA polymerase II subunit RPB2-like K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 132624986 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 132641891 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 132598894 DNA-directed RNA polymerase II subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 132616126 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 132603800 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 132631935 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 132640297 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 132623274 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 132640494 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 132630272 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 132615532 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 132615699 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 132605841 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 132618750 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 132636672 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 132645136 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 132640330 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 132616073 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 132607142 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 132600392 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 132629446 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 132633526 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 132636921 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 132645335 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 132621551 cullin-4-like K10609 CUL4; cullin 4
F 132640306 cullin-4-like isoform X1 K10609 CUL4; cullin 4
F 132631575 DNA damage-binding protein 1 isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 132604063 WD repeat-containing protein ATCSA-1-like isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 132610517 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 132645430 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 132628927 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 132631201 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 132622795 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 132634876 general transcription and DNA repair factor IIH helicase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 132634877 general transcription and DNA repair factor IIH helicase subunit XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 132605601 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 132627706 general transcription and DNA repair factor IIH subunit TFB1-1-like K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 132612579 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 132601359 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 132621446 general transcription and DNA repair factor IIH subunit TFB2 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 132611250 general transcription and DNA repair factor IIH subunit TFB5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 132635034 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 132634883 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 132645929 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 132627318 uncharacterized protein LOC132627318 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 132632855 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 132635419 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 132640859 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 132603418 replication protein A 32 kDa subunit A-like isoform X1 K10739 RFA2; replication factor A2
E 132607236 replication protein A 32 kDa subunit B isoform X1 K10739 RFA2; replication factor A2
E 132629824 replication protein A 14 kDa subunit B-like isoform X1 K10740 RPA3; replication factor A3
E 132607304 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 132632901 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 132635188 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 132623857 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 132600477 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 132633416 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 132623289 cullin-3A-like K03869 CUL3; cullin 3
E 132626094 cullin-3A-like K03869 CUL3; cullin 3
E 132626097 cullin-3A-like isoform X1 K03869 CUL3; cullin 3
E 132605854 uncharacterized protein LOC132605854 K03872 ELOC; elongin-C
E 132640026 uncharacterized protein LOC132640026 isoform X1 K03873 ELOB; elongin-B
E 132617394 uncharacterized protein LOC132617394 isoform X1 K15077 ELA1; elongin-A
E 132619102 uncharacterized protein LOC132619102 K15077 ELA1; elongin-A
E 132620166 uncharacterized protein LOC132620166 K15077 ELA1; elongin-A
E 132642571 uncharacterized protein LOC132642571 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 132600055 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 132631881 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 132603453 DNA mismatch repair protein MSH7 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
E 132644944 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 132613667 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 132608935 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 132621723 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 132607300 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 132635803 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 132629155 uncharacterized protein LOC132629155 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
E 132610808 uncharacterized protein LOC132610808 K03505 POLD4; DNA polymerase delta subunit 4
E 132639142 uncharacterized protein LOC132639142 K03505 POLD4; DNA polymerase delta subunit 4
E 132640293 uncharacterized protein LOC132640293 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 132632855 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 132635419 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 132640859 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 132603418 replication protein A 32 kDa subunit A-like isoform X1 K10739 RFA2; replication factor A2
E 132607236 replication protein A 32 kDa subunit B isoform X1 K10739 RFA2; replication factor A2
E 132629824 replication protein A 14 kDa subunit B-like isoform X1 K10740 RPA3; replication factor A3
E 132607304 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 132602933 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 132634954 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
E 132627142 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 132599904 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 132619087 uncharacterized protein LOC132619087 K10756 RFC3_5; replication factor C subunit 3/5
E 132624658 uncharacterized protein LOC132624658 K10756 RFC3_5; replication factor C subunit 3/5
E 132641487 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 132607618 replication factor C subunit 3 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 132605998 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 132633238 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 132623942 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 132600477 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 132632356 uncharacterized protein LOC132632356 K24755 WDR76; WD repeat-containing protein 76
E 132622142 DNA damage-binding protein cmr1-like K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 132629882 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 132640763 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 132621544 nibrin homolog K10867 NBN; nibrin
E 132625133 LOW QUALITY PROTEIN: nibrin homolog K10867 NBN; nibrin
D BRCA1-core complex
E 132610669 BRCA1-associated RING domain protein 1-like K10683 BARD1; BRCA1-associated RING domain protein 1
E 132611460 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 132605718 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 132604222 uncharacterized protein LOC132604222 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 132628123 uncharacterized protein LOC132628123 K12173 BRE; BRCA1-A complex subunit BRE
E 132598674 COP9 signalosome complex subunit 5-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 132607456 uncharacterized protein LOC132607456 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 132605565 BRCT domain-containing protein At4g02110-like K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 132644845 uncharacterized protein LOC132644845 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 132644952 BRCT domain-containing protein At4g02110-like isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 132629882 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 132640763 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 132621544 nibrin homolog K10867 NBN; nibrin
E 132625133 LOW QUALITY PROTEIN: nibrin homolog K10867 NBN; nibrin
D BRCA complex
E 132622438 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 132603350 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 132603350 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 132600818 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 132640741 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 132643522 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 132626357 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 132618361 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 132606109 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 132613712 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
E 132613713 DNA repair RAD52-like protein 2, chloroplastic isoform X1 K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 132613801 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 132599201 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 132637159 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 132609114 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 132598421 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 132635553 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 132645940 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 132598678 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 132616885 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 132641246 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 132598678 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 132616885 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 132611519 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 132641250 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 132636653 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 132600510 uncharacterized protein LOC132600510 isoform X1 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 132632855 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 132635419 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 132640859 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 132603418 replication protein A 32 kDa subunit A-like isoform X1 K10739 RFA2; replication factor A2
E 132607236 replication protein A 32 kDa subunit B isoform X1 K10739 RFA2; replication factor A2
E 132629824 replication protein A 14 kDa subunit B-like isoform X1 K10740 RPA3; replication factor A3
E 132607304 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 132617128 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 132637557 uncharacterized protein LOC132637557 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 132604502 uncharacterized protein LOC132604502 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 132626638 uncharacterized protein LOC132626638 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 132607421 uncharacterized protein LOC132607421 isoform X1 K19022 AP5B1; AP-5 complex subunit beta-1
E 132645027 AP-5 complex subunit mu isoform X1 K19023 AP5M1; AP-5 complex subunit mu-1
E 132628284 uncharacterized protein LOC132628284 isoform X1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 132644788 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 132640482 structural maintenance of chromosomes protein 6B-like isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 132626023 uncharacterized protein LOC132626023 isoform X1 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 132618655 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 132629263 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 132602709 non-structural maintenance of chromosomes element 4 homolog B-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 132607512 non-structural maintenance of chromosomes element 4 homolog A isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 132612639 crossover junction endonuclease EME1B-like isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 132644852 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 132632773 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 132601315 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 132605189 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 132642490 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 132628228 structure-specific endonuclease subunit SLX1 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 132644818 uncharacterized protein LOC132644818 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 132645653 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 132631883 single-strand DNA endonuclease 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 132614818 uncharacterized protein LOC132614818 K19026 SPG11; spatacsin
E 132635683 uncharacterized protein LOC132635683 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 132625220 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 132627814 protein MRG1-like isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 132621359 uncharacterized protein LOC132621359 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 132641347 uncharacterized protein LOC132641347 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 132622357 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 132644215 uncharacterized protein LOC132644215 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 132610621 3'-5' exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 132633576 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 132636297 uncharacterized protein LOC132636297 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 132641523 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 132605048 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 132610171 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 132645700 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 132629882 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 132640763 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 132603389 DNA ligase 4 isoform X1 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 132642706 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 132641410 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 132630876 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 132606312 uncharacterized protein LOC132606312 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 132632088 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 132618760 uncharacterized protein LOC132618760 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 132626955 DEAD-box ATP-dependent RNA helicase FANCM K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 132603603 protein MHF1 homolog isoform X1 K11511 APITD1; centromere protein S
E 132632557 protein MHF2 homolog K15360 STRA13; centromere protein X
E 132631770 uncharacterized protein LOC132631770 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 132598678 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 132616885 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 132611519 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 132641250 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 132636653 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 132600510 uncharacterized protein LOC132600510 isoform X1 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 132645313 uncharacterized protein LOC132645313 isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 132626781 uncharacterized protein LOC132626781 isoform X1 K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 132622438 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 132607456 uncharacterized protein LOC132607456 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 132608765 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 132603350 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 132640741 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 132628475 uncharacterized protein LOC132628475 K11137 TELO2; telomere length regulation protein
E 132612343 uncharacterized protein LOC132612343 K15361 WDR48; WD repeat-containing protein 48
E 132645226 uncharacterized protein LOC132645226 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 132632444 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 132602031 phytochrome-associated serine/threonine-protein phosphatase 3 isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 132600408 uncharacterized protein LOC132600408 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 132621798 uncharacterized protein LOC132621798 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 132605971 uncharacterized protein LOC132605971 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 132622244 uncharacterized protein LOC132622244 K23314 WRAP53; telomerase Cajal body protein 1
E 132605711 uncharacterized protein LOC132605711 K24752 WDR70; WD repeat-containing protein 70
E 132632356 uncharacterized protein LOC132632356 K24755 WDR76; WD repeat-containing protein 76
E 132622142 DNA damage-binding protein cmr1-like K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 132598933 DNA polymerase kappa-like K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 132598935 DNA polymerase kappa-like isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 132598979 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 132645921 LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 132632666 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 132600798 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 132621219 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 132623275 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 132600517 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 132617999 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 132636037 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 132614182 ubiquitin-conjugating enzyme E2 variant 1B-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 132625889 ubiquitin-conjugating enzyme E2 variant 1D isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 132607211 ubiquitin-conjugating enzyme E2 variant 1D-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 132629042 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 132616731 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 132605998 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 132631573 uncharacterized protein LOC132631573 isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 132633076 uncharacterized protein LOC132633076 K10903 HUS1; HUS1 checkpoint protein
D 132635322 uncharacterized protein LOC132635322 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 132621229 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 132634954 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
D 132627142 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 132599904 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 132619087 uncharacterized protein LOC132619087 K10756 RFC3_5; replication factor C subunit 3/5
D 132624658 uncharacterized protein LOC132624658 K10756 RFC3_5; replication factor C subunit 3/5
D 132641487 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 132607618 replication factor C subunit 3 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 132635322 uncharacterized protein LOC132635322 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 132632004 uncharacterized protein LOC132632004 isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 132615481 uncharacterized protein LOC132615481 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 132628475 uncharacterized protein LOC132628475 K11137 TELO2; telomere length regulation protein
D 132636261 uncharacterized protein LOC132636261 K20403 TTI1; TELO2-interacting protein 1
D 132617686 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 132636234 protein GET4-like isoform X1 K23387 GET4; golgi to ER traffic protein 4
D 132609245 protein GET4-like isoform X1 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 132599356 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 132632655 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 132613495 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 132630010 14-3-3 protein 9-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 132613895 14-3-3 protein 1 K06630 YWHAE; 14-3-3 protein epsilon
D 132614164 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 132615298 14-3-3-like protein E K06630 YWHAE; 14-3-3 protein epsilon
D 132616882 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 132618641 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 132621384 14-3-3 protein 4 K06630 YWHAE; 14-3-3 protein epsilon
D 132636584 14-3-3 protein 8 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 132603972 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 132626137 14-3-3-like protein GF14 iota isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 132641979 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 132627519 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 132627554 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 132627605 14-3-3 protein 10 K06630 YWHAE; 14-3-3 protein epsilon
D 132611032 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 132626866 uncharacterized protein LOC132626866 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 132610814 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132633907 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132600645 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132625746 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132626325 serine/threonine-protein kinase Nek3-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132644022 serine/threonine-protein kinase Nek6-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132645272 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 132625967 uncharacterized protein LOC132625967 K22422 DONSON; protein downstream neighbor of Son
D 132612602 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 132604275 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 132645452 uncharacterized protein LOC132645452 K25059 SDE2; replication stress response regulator SDE2
D 132614744 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 132635674 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 132598871 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 132619142 uncharacterized protein LOC132619142 isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 132613639 uncharacterized protein LOC132613639 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 132635754 DNA cross-link repair protein PSO2/SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 132625036 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 132617737 uncharacterized protein LOC132617737 isoform X1 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 132619496 uncharacterized protein LOC132619496 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 132600791 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 132604268 uncharacterized protein LOC132604268 isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 132632894 uncharacterized protein LOC132632894 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 132622200 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 132622201 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 132641760 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 132619216 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 132604335 pre-mRNA-processing factor 19 homolog 1-like isoform X1 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 132609225 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 132615664 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 132633233 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 132645602 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
D 132612705 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 132633620 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 132633622 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 132634034 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 132641844 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 132641848 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 132646000 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132608707 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132628007 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132645236 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132613890 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 132614000 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 132621350 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 132645011 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 132635039 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 132623330 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 132621641 alkylbase DNA glycosidase-like protein mag2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 132623590 alkylbase DNA glycosidase-like protein mag2 isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 132628029 alkylbase DNA glycosidase-like protein mag2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 132607374 DNA-3-methyladenine glycosylase isoform X1 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 132631421 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 132631872 uncharacterized protein LOC132631872 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132615435 uncharacterized protein LOC132615435 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132633017 uncharacterized protein LOC132633017 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132637007 uncharacterized protein LOC132637007 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132623227 uncharacterized protein LOC132623227 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132642837 uncharacterized protein LOC132642837 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132627975 uncharacterized protein LOC132627975 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 132633073 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 132632751 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132603279 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132608870 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132608871 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 132609058 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 132613953 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 132616514 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 132616514 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 39333085 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 132640939 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 132626543 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 39333083 rpoC2; RpoC2 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 39333084 rpoC1; RpoC1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 39333142 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 132621406 uncharacterized protein LOC132621406 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 132603545 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 132617321 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 132640056 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 132617321 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 132640056 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 132633428 uncharacterized protein LOC132633428 K04485 radA; DNA repair protein RadA/Sms
E 132641591 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 132645329 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 132636068 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 132644378 uncharacterized protein LOC132644378 isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 132617321 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
D 132640056 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 132603545 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 132641844 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 132641848 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 132646000 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132608707 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132628007 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 132645236 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024