+F Repair protein KO
#
DNA Repair and Recombination Proteins - Laccaria bicolor
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LACBIDRAFT_253981 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E LACBIDRAFT_170543 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LACBIDRAFT_249888 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LACBIDRAFT_316334 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_312282 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_316355 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_316377 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_298866 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_303372 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_316369 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E LACBIDRAFT_318664 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LACBIDRAFT_300784 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E LACBIDRAFT_235799 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E LACBIDRAFT_146613 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E LACBIDRAFT_306129 hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E LACBIDRAFT_251065 hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E LACBIDRAFT_299606 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F LACBIDRAFT_251819 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F LACBIDRAFT_324932 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F LACBIDRAFT_305369 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F LACBIDRAFT_305169 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F LACBIDRAFT_312780 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F LACBIDRAFT_311879 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F LACBIDRAFT_309028 hypothetical protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E LACBIDRAFT_250172 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E LACBIDRAFT_254074 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E LACBIDRAFT_297651 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E LACBIDRAFT_192371 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E LACBIDRAFT_187450 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E LACBIDRAFT_319109 hypothetical protein K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
E LACBIDRAFT_309120 hypothetical protein K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other BER factors
E LACBIDRAFT_319104 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E LACBIDRAFT_316135 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E LACBIDRAFT_319108 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F LACBIDRAFT_312109 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F LACBIDRAFT_247017 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F LACBIDRAFT_317013 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F LACBIDRAFT_237655 hypothetical protein K10609 CUL4; cullin 4
F LACBIDRAFT_309027 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F LACBIDRAFT_157632 hypothetical protein K15082 RAD7; DNA repair protein RAD7
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F LACBIDRAFT_327452 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F LACBIDRAFT_229137 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F LACBIDRAFT_232470 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F LACBIDRAFT_187652 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F LACBIDRAFT_184892 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F LACBIDRAFT_163919 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F LACBIDRAFT_294947 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F LACBIDRAFT_291551 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F LACBIDRAFT_184025 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F LACBIDRAFT_190666 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F LACBIDRAFT_190677 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F LACBIDRAFT_246020 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F LACBIDRAFT_317013 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F LACBIDRAFT_237655 hypothetical protein K10609 CUL4; cullin 4
F LACBIDRAFT_309027 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E Other TCR factor
D TFIIH complex
E LACBIDRAFT_184863 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E LACBIDRAFT_319363 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E LACBIDRAFT_313773 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E LACBIDRAFT_249203 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E LACBIDRAFT_313788 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E LACBIDRAFT_257057 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E LACBIDRAFT_318336 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E LACBIDRAFT_305450 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E LACBIDRAFT_242480 hypothetical protein K06634 CCNH; cyclin H
E LACBIDRAFT_316073 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E LACBIDRAFT_182415 hypothetical protein K07466 RFA1; replication factor A1
E LACBIDRAFT_244225 hypothetical protein K10739 RFA2; replication factor A2
E LACBIDRAFT_297715 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E LACBIDRAFT_242668 hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E LACBIDRAFT_147485 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E LACBIDRAFT_306768 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E LACBIDRAFT_297010 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E LACBIDRAFT_187450 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E LACBIDRAFT_243929 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E LACBIDRAFT_294249 hypothetical protein K03869 CUL3; cullin 3
E LACBIDRAFT_318989 hypothetical protein K03872 ELOC; elongin-C
E LACBIDRAFT_305839 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E LACBIDRAFT_252536 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E LACBIDRAFT_297730 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E LACBIDRAFT_234236 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E LACBIDRAFT_253924 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E LACBIDRAFT_311564 hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E LACBIDRAFT_251819 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E LACBIDRAFT_324932 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E LACBIDRAFT_305369 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E LACBIDRAFT_305169 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E LACBIDRAFT_182415 hypothetical protein K07466 RFA1; replication factor A1
E LACBIDRAFT_244225 hypothetical protein K10739 RFA2; replication factor A2
E LACBIDRAFT_297715 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E LACBIDRAFT_303901 hypothetical protein K10754 RFC1; replication factor C subunit 1
E LACBIDRAFT_301075 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E LACBIDRAFT_232800 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E LACBIDRAFT_318048 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E LACBIDRAFT_229498 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E LACBIDRAFT_250172 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E LACBIDRAFT_235461 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E LACBIDRAFT_187450 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E LACBIDRAFT_306025 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E LACBIDRAFT_248055 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E LACBIDRAFT_248055 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
E LACBIDRAFT_159274 hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein
D RecA family proteins
E LACBIDRAFT_297196 hypothetical protein K10871 RAD51L3; RAD51-like protein 3
E LACBIDRAFT_300759 hypothetical protein K10879 XRCC2; DNA-repair protein XRCC2
D Rad52 family proteins
E LACBIDRAFT_168781 hypothetical protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E LACBIDRAFT_229662 CHR16206; DNA repair protein, SNF2 family K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E LACBIDRAFT_313557 CHR16205; DNA repair protein, SNF2 family DNA-dependent ATPase K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E LACBIDRAFT_165891 hypothetical protein K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E LACBIDRAFT_312100 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E LACBIDRAFT_312100 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E LACBIDRAFT_232184 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E LACBIDRAFT_297007 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E LACBIDRAFT_182415 hypothetical protein K07466 RFA1; replication factor A1
E LACBIDRAFT_244225 hypothetical protein K10739 RFA2; replication factor A2
E LACBIDRAFT_297715 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E LACBIDRAFT_186682 serine/threonine specific protein phosphatase K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E LACBIDRAFT_305888 hypothetical protein K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E LACBIDRAFT_315964 hypothetical protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E LACBIDRAFT_246146 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E LACBIDRAFT_292667 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E LACBIDRAFT_295146 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E LACBIDRAFT_306584 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E LACBIDRAFT_305917 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E LACBIDRAFT_323012 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E LACBIDRAFT_249303 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E LACBIDRAFT_301746 hypothetical protein K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E LACBIDRAFT_296450 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E LACBIDRAFT_299349 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_299727 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_303869 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_305215 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_306505 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_307877 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_311230 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_313388 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_314008 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_314471 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_315357 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_316211 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_316330 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_318973 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_321397 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_323980 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_325393 DNA repair endonuclease-like protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_329211 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_333494 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_336129 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E LACBIDRAFT_297214 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E LACBIDRAFT_313715 hypothetical protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E LACBIDRAFT_301311 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E LACBIDRAFT_301313 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E LACBIDRAFT_297268 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E LACBIDRAFT_301795 hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E LACBIDRAFT_316078 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E LACBIDRAFT_301843 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E LACBIDRAFT_248055 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E LACBIDRAFT_305524 DNA ligase IV K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E LACBIDRAFT_305555 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E LACBIDRAFT_319108 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E LACBIDRAFT_319109 hypothetical protein K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
E LACBIDRAFT_309120 hypothetical protein K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
E LACBIDRAFT_296372 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E LACBIDRAFT_298520 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E LACBIDRAFT_329000 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E LACBIDRAFT_153002 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E LACBIDRAFT_313964 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E LACBIDRAFT_312100 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E LACBIDRAFT_232184 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E LACBIDRAFT_297007 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
E LACBIDRAFT_159274 hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein
D Other FA pathway factors
E LACBIDRAFT_300159 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E LACBIDRAFT_306197 hypothetical protein K11137 TELO2; telomere length regulation protein
C Other DSBR factors
D Protein phosphatase 6
E LACBIDRAFT_191020 serine/threonine specific protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
D Ubiquitin ligases
D Others
E LACBIDRAFT_297797 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E LACBIDRAFT_379903 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E LACBIDRAFT_306025 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D LACBIDRAFT_249504 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D LACBIDRAFT_183579 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D LACBIDRAFT_315697 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
D LACBIDRAFT_180175 hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D LACBIDRAFT_315822 hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D LACBIDRAFT_301359 CHR16210; RAD5-like protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D LACBIDRAFT_179061 CHR16219; SNF2 superfamily protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D LACBIDRAFT_301025 CHR16216; SNF2 family DNA-dependent ATPase K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D LACBIDRAFT_185971 hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D LACBIDRAFT_174313 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D LACBIDRAFT_250172 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
D LACBIDRAFT_300905 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D LACBIDRAFT_313710 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D LACBIDRAFT_252775 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D LACBIDRAFT_315835 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D LACBIDRAFT_315092 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D LACBIDRAFT_301075 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D LACBIDRAFT_232800 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D LACBIDRAFT_318048 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D LACBIDRAFT_229498 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D LACBIDRAFT_315835 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D LACBIDRAFT_304921 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D LACBIDRAFT_306026 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D LACBIDRAFT_305785 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D LACBIDRAFT_306197 hypothetical protein K11137 TELO2; telomere length regulation protein
D LACBIDRAFT_320828 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D LACBIDRAFT_294351 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D LACBIDRAFT_295122 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D LACBIDRAFT_304059 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D LACBIDRAFT_315991 hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D LACBIDRAFT_323411 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon
D LACBIDRAFT_298988 hypothetical protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D LACBIDRAFT_293051 hypothetical protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D LACBIDRAFT_328751 hypothetical protein K20780 MDC1; mediator of DNA damage checkpoint protein 1
D LACBIDRAFT_313174 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D LACBIDRAFT_190385 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D LACBIDRAFT_232894 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D LACBIDRAFT_244371 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D LACBIDRAFT_301212 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D LACBIDRAFT_180699 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D LACBIDRAFT_310257 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D LACBIDRAFT_310255 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D LACBIDRAFT_319037 CHR16220; RAD26-like SNF2 family DNA-dependent ATPase K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D LACBIDRAFT_170847 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D LACBIDRAFT_179365 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D LACBIDRAFT_301771 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
C Modulation of nucleotide pools
D LACBIDRAFT_304341 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LACBIDRAFT_169007 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LACBIDRAFT_190820 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LACBIDRAFT_176996 LbRNRalpha1; ribonucleotide reductase alpha subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D LACBIDRAFT_230488 LbRNRbeta; ribonucleotide reductase, beta subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LACBIDRAFT_253981 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E LACBIDRAFT_170543 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LACBIDRAFT_249888 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LACBIDRAFT_313635 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E LACBIDRAFT_318664 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LACBIDRAFT_235799 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E LACBIDRAFT_146613 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E LACBIDRAFT_297356 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E LACBIDRAFT_297356 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D LACBIDRAFT_304341 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LACBIDRAFT_169007 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LACBIDRAFT_190820 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024