+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leptospira biflexa serovar Patoc Patoc 1 (Paris)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LEPBI_I2409 phr; Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LEPBI_I0821 ung; Uracil-DNA glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LEPBI_I1287 Putative A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LEPBI_I1021 nth; Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LEPBI_I2544 Putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LEPBI_I3287 Conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LEPBI_I2583 Putative ADP-ribose pyrophosphatase, NudF subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LEPBI_I1531 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase; dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LEPBI_II0134 ada; Bifunctional protein: transcriptional regulator of DNA repair/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LEPBI_I2409 phr; Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D LEPBI_I2494 Putative deoxyribodipyrimidine photo-lyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E LEPBI_I0821 ung; Uracil-DNA glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LEPBI_I1287 Putative A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LEPBI_I1021 nth; Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LEPBI_I1829 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LEPBI_I1309 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LEPBI_I0217 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LEPBI_I0674 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LEPBI_I1837 uvrA; UvrABC system protein A (UvrA protein; Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A E LEPBI_I0845 uvrB; UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B E LEPBI_I2076 uvrC; UvrABC system protein C (UvrC protein; Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C E LEPBI_I1634 pcrA1; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I1736 pcrA3; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I2066 pcrA4; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I2378 pcrA2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I0674 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E LEPBI_I0217 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LEPBI_I1972 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit; Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LEPBI_I1971 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LEPBI_I1939 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LEPBI_I1823 mfd; Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LEPBI_I0833 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E LEPBI_I2151 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LEPBI_I1860 xseA; Exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LEPBI_I1861 xseB; Exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LEPBI_I2936 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LEPBI_I0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LEPBI_I0012 Conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LEPBI_I3461 dnaX1; DNA polymerase III gamma subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E LEPBI_I3479 dnaX2; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LEPBI_I0217 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LEPBI_I1634 pcrA1; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I1736 pcrA3; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I2066 pcrA4; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I2378 pcrA2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LEPBI_I2099 ssbA; Single-stranded DNA binding protein (SSB; Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein E LEPBI_I2975 ssbB; Single-strand binding protein (SSB; Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LEPBI_p0020 recB; Exodeoxyribonuclease V beta chain, UvrD subfamily K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E LEPBI_p0021 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E LEPBI_p0019 recD; ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LEPBI_I2446 recA; Protein RecA (Recombinase A) K03553 recA; recombination protein RecA E LEPBI_I1501 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LEPBI_I0524 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LEPBI_I3318 Putative crossover junction endodeoxyribonuclease RuvC (Holliday junction nuclease ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E LEPBI_I1656 priA; Primosomal protein N' (Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LEPBI_I2905 Putative ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E LEPBI_I2446 recA; Protein RecA (Recombinase A) K03553 recA; recombination protein RecA E LEPBI_I0774 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E LEPBI_I0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E LEPBI_I0349 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LEPBI_I2223 Putative ATP-binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LEPBI_I1309 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LEPBI_I2091 recO; DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E LEPBI_I3463 recR; Recombination protein RecR K06187 recR; recombination protein RecR E LEPBI_I1630 Putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E LEPBI_I1501 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LEPBI_I0524 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LEPBI_I3318 Putative crossover junction endodeoxyribonuclease RuvC (Holliday junction nuclease ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E LEPBI_I2905 Putative ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E LEPBI_I2342 Putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LEPBI_I0006 gyrA1; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LEPBI_I0679 gyrA2; DNA gyrase/topoisomerase, type IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LEPBI_I0005 gyrB1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LEPBI_I0680 gyrB2; DNA gyrase/topoisomerase, type IIa, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LEPBI_I1163 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LEPBI_II0036 Putative DNA-binding protein (HU-like protein) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LEPBI_I1309 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LEPBI_I2091 recO; DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F LEPBI_I3463 recR; Recombination protein RecR K06187 recR; recombination protein RecR F LEPBI_I0217 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LEPBI_I0309 recQ1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LEPBI_I2503 recQ2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LEPBI_I1837 uvrA; UvrABC system protein A (UvrA protein; Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A F LEPBI_I0845 uvrB; UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LEPBI_II0150 dinP; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D LEPBI_I2446 recA; Protein RecA (Recombinase A) K03553 recA; recombination protein RecA D LEPBI_I1316 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LEPBI_I1630 Putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LEPBI_I2161 Putative DNA polymerase K02336 polB; DNA polymerase II [EC:2.7.7.7] D LEPBI_I2099 ssbA; Single-stranded DNA binding protein (SSB; Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein D LEPBI_I2975 ssbB; Single-strand binding protein (SSB; Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LEPBI_I1719 Putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LEPBI_I3287 Conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LEPBI_I2583 Putative ADP-ribose pyrophosphatase, NudF subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LEPBI_I1531 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase; dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LEPBI_I1686 nrdA; Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LEPBI_I2177 Hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024