+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leptospira borgpetersenii L550

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E LBL_2482 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LBL_1521 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LBL_1428 Endonuclease III related protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LBL_1401 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D LBL_1631 Nuclease S1 K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D LBL_0038 Hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBL_0941 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBL_2228 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LBL_0141 ada; Methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LBL_2482 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LBL_0362 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LBL_2417 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E LBL_1521 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LBL_1428 Endonuclease III related protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LBL_1888 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LBL_1061 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LBL_2907 lig; DNA ligase (NAD+) (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LBL_0548 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LBL_1629 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E LBL_0755 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B E LBL_1431 uvrC; Excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E LBL_1581 uvrD-2; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBL_0802 uvrD-3; DNA/RNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBL_1531 uvrD-1; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBL_0548 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E LBL_2907 lig; DNA ligase (NAD+) (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LBL_0743 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LBL_0744 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LBL_0480 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LBL_0440 rpoA-1; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LBL_1885 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LBL_1417 mutS; DNA mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E LBL_2218 mutL; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LBL_1499 xseA; Exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LBL_1498 xseB; Exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LBL_0288 dnaE; DNA-directed DNA polymerase, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LBL_0005 dnaN; DNA-directed DNA polymerase, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LBL_0015 holA; DNA-directed DNA polymerase, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LBL_0003 dnaX-1; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E LBL_0064 dnaX-2; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LBL_2907 lig; DNA ligase (NAD+) (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LBL_1581 uvrD-2; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBL_0802 uvrD-3; DNA/RNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBL_1531 uvrD-1; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBL_2444 Single-strand DNA binding protein family K03111 ssb; single-strand DNA-binding protein E LBL_1246 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LBL_1347 Site-specific DNA-methyltransferase (adenine-specific), dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LBL_2395 recB; Exodeoxyribonuclease V, beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E LBL_2394 recC; Exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E LBL_2396 recD; Exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LBL_1569 recA; RecA recombinase K03553 recA; recombination protein RecA E LBL_1063 ruvA; Holliday junction specific DNA binding protein K03550 ruvA; holliday junction DNA helicase RuvA E LBL_2317 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LBL_2536 ruvC; Crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E LBL_1664 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LBL_1569 recA; RecA recombinase K03553 recA; recombination protein RecA E LBL_0827 sms; ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E LBL_0006 recF; Recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF E LBL_2677 ATP-dependent DNA helicase, recG-related K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LBL_1061 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LBL_1254 recO; Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E LBL_0066 recR; Recombinational DNA repair protein K06187 recR; recombination protein RecR E LBL_1527 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LBL_1063 ruvA; Holliday junction specific DNA binding protein K03550 ruvA; holliday junction DNA helicase RuvA E LBL_2317 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LBL_2536 ruvC; Crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E LBL_0657 Conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LBL_0254 DNA topoisomerase (ATP-hydrolyzing), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LBL_0009 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LBL_0253 DNA topoisomerase (ATP-hydrolyzing), subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LBL_0008 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LBL_1279 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LBL_1061 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LBL_1254 recO; Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F LBL_0066 recR; Recombinational DNA repair protein K06187 recR; recombination protein RecR F LBL_2907 lig; DNA ligase (NAD+) (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LBL_2393 recQ-2; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LBL_2780 recQ-1; DNA helicase, Superfamily II K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LBL_1629 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F LBL_0755 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D LBL_1569 recA; RecA recombinase K03553 recA; recombination protein RecA D LBL_1071 lexA; Repressor lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D LBL_1527 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LBL_2444 Single-strand DNA binding protein family K03111 ssb; single-strand DNA-binding protein D LBL_1246 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LBL_1831 DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LBL_0038 Hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBL_0941 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBL_2228 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LBL_1495 nrdA; Ribonucleoside-triphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024