+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lentilactobacillus buchneri subsp. silagei CD034
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LBUCD034_1256 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LBUCD034_1151 era; GTP-binding protein era K03595 era; GTPase
C LBUCD034_0812 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LBUCD034_1117 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
C LBUCD034_1282 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C LBUCD034_1521 nusG; transcriptional antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LBUCD034_1659 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LBUCD034_1268 sunL; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LBUCD034_1507 rsmC; 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D LBUCD034_0790 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LBUCD034_1133 putative RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LBUCD034_0606 gidB; 16S rRNA (guanine527-N7)-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LBUCD034_0733 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LBUCD034_1497 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LBUCD034_1277 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D LBUCD034_0728 rrmA; rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D LBUCD034_1525 trmH; RNA methyltransferase, TrmH family K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LBUCD034_0028 rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LBUCD034_1277 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LBUCD034_1751 trmA; tRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LBUCD034_1170 rluB; pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LBUCD034_0726 rlud1; 23S rRNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LBUCD034_1219 rlud3; pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LBUCD034_2230 rlud7; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LBUCD034_1845 rlud5; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C LBUCD034_1494 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LBUCD034_0485 N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C LBUCD034_1249 rimM; ribosome maturation factor K02860 rimM; 16S rRNA processing protein RimM
C LBUCD034_1132 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C LBUCD034_1256 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LBUCD034_1063 putative holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C LBUCD034_1526 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C LBUCD034_1635 DEAD box ATP-dependent RNA helicase SrmB K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C LBUCD034_1060 helY; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C LBUCD034_1151 era; GTP-binding protein era K03595 era; GTPase
C LBUCD034_1265 ribosome biogenesis GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LBUCD034_1178 engA; GTP-binding protein K03977 engA; GTPase
C LBUCD034_0812 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C LBUCD034_1190 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C LBUCD034_1913 GTP-binding protein HflX K03665 hflX; GTPase
C LBUCD034_1329 GTP-binding protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C LBUCD034_0989 SUA5 family translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LBUCD034_1134 relA; putative GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LBUCD034_1121 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LBUCD034_1116 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C LBUCD034_0003 RNA-binding S4 protein K14761 rlbA; ribosome-associated protein
C LBUCD034_1325 hypothetical protein K09710 ybeB; ribosome-associated protein
C LBUCD034_1149 putative metall-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C LBUCD034_1328 RNA-binding protein K07574 yhbY; RNA-binding protein
C LBUCD034_1478 ribosome-associated inhibitor protein Y K05808 hpf; ribosome hibernation promoting factor
C LBUCD034_0610 GTP-binding translation factor YchF K06942 ychF; ribosome-binding ATPase
C LBUCD034_1322 nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024