+E Ribosome biogenesis KO
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Ribosome Biogenesis - Leptolyngbya boryana
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LBWT_45340 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LBWT_40010 GTP-binding protein Era K03595 era; GTPase
C LBWT_3620 small GTP-binding protein K03595 era; GTPase
C LBWT_40290 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LBWT_34650 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C LBWT_21520 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C LBWT_34790 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LBWT_47950 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LBWT_33260 ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LBWT_35270 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LBWT_51740 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LBWT_3530 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LBWT_47890 ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LBWT_11220 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LBWT_47340 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D LBWT_16430 TrmH family RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LBWT_46160 RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D LBWT_34210 ribosomal RNA large subunit methyltransferase J K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D LBWT_57900 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D LBWT_47340 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LBWT_10620 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LBWT_27610 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D LBWT_34340 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LBWT_53180 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LBWT_45470 pseudouridine synthase, Rsu K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C LBWT_22340 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LBWT_43190 acetyltransferase, ribosomal protein N-acetylase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C LBWT_53650 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C LBWT_47240 30S ribosomal protein S12 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C LBWT_11000 ribosomal protein L11 methylase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C LBWT_2080 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C LBWT_45340 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LBWT_32900 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C LBWT_47160 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C LBWT_16420 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C LBWT_47230 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C LBWT_40010 GTP-binding protein Era K03595 era; GTPase
C LBWT_3620 small GTP-binding protein K03595 era; GTPase
C LBWT_24890 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LBWT_X1450 Probable GTPase related to EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LBWT_10180 ribosome-associated GTPase EngA K03977 engA; GTPase
C LBWT_40290 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C LBWT_20120 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
C LBWT_26440 GTP-binding proten HflX K03665 hflX; GTPase
B Other maturation factors
C LBWT_36370 putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LBWT_13840 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LBWT_19560 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LBWT_34640 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C LBWT_2030 hypothetical protein K14761 rlbA; ribosome-associated protein
C LBWT_42790 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
C LBWT_25110 metalloprotease ybeY K07042 ybeY; probable rRNA maturation factor
C LBWT_20270 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C LBWT_2010 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024