+D GENES KO
#
KEGG Orthology (KO) - Leadbetterella byssophila
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:lby00010]
D Lbys_2938 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Lbys_3384 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_0665 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Lbys_0012 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_3010 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_2063 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Lbys_0926 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Lbys_3021 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Lbys_1671 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Lbys_0613 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Lbys_2028 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Lbys_2059 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Lbys_1402 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Lbys_1333 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Lbys_2505 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Lbys_0312 HAD-superfamily hydrolase, subfamily IA, variant 3 K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_2607 Aldehyde Dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D Lbys_0454 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:lby00020]
D Lbys_3325 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Lbys_0075 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Lbys_3113 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Lbys_3488 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Lbys_3489 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3580 catalytic domain-containing protein of components of various dehydrogenase complexes K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_1574 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Lbys_1105 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Lbys_1257 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Lbys_2048 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Lbys_2047 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Lbys_1017 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Lbys_1285 malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D Lbys_0454 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Lbys_2059 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Lbys_1402 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Lbys_1333 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:lby00030]
D Lbys_3384 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Lbys_2877 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D Lbys_3454 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Lbys_1197 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Lbys_1198 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Lbys_0071 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Lbys_0696 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Lbys_0219 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Lbys_0371 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D Lbys_0221 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_0088 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Lbys_1616 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Lbys_2607 Aldehyde Dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D Lbys_1799 Quinoprotein glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D Lbys_1448 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Lbys_1617 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Lbys_0012 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_3010 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_0665 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:lby00040]
D Lbys_1625 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D Lbys_0587 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D Lbys_1642 4-deoxy-L-threo-5-hexulose uronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D Lbys_1643 short-chain dehydrogenase/reductase SDR K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D Lbys_1618 D-glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D Lbys_1620 Mannitol dehydrogenase domain K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D Lbys_1619 Altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D Lbys_3520 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D Lbys_2327 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D Lbys_0096 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Lbys_2507 L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Lbys_3454 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Lbys_2508 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D Lbys_2509 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D Lbys_2942 Carbohydrate kinase, FGGY K00854 xylB; xylulokinase [EC:2.7.1.17]
D Lbys_2943 D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Lbys_2341 Xylose isomerase domain-containing protein TIM barrel K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D Lbys_1449 fumarylacetoacetate (FAA) hydrolase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141]
D Lbys_1775 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D Lbys_0366 Carbohydrate kinase, FGGY K22935 XK1; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:lby00051]
D Lbys_3427 Mannan endo-1,4-beta-mannosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Lbys_2253 Mannan endo-1,4-beta-mannosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Lbys_3085 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Lbys_2840 mannose-6-phosphate isomerase, type 2 K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Lbys_3342 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Lbys_2011 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Lbys_2927 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Lbys_2464 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Lbys_2899 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Lbys_0668 NUDIX hydrolase K18447 NUDX14; ADP-sugar diphosphatase [EC:3.6.1.21]
D Lbys_2061 short-chain dehydrogenase/reductase SDR K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D Lbys_1528 amidohydrolase 2 K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D Lbys_1938 Ureidoglycolate lyase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D Lbys_2341 Xylose isomerase domain-containing protein TIM barrel K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_0665 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Lbys_2943 D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Lbys_0012 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_3010 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_2063 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Lbys_0696 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Lbys_0379 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:lby00052]
D Lbys_2505 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Lbys_2575 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Lbys_1312 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Lbys_2466 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_2938 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Lbys_0352 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_2514 Glycoside hydrolase 97 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:lby00053]
D Lbys_0096 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Lbys_1448 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Lbys_2507 L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_1449 fumarylacetoacetate (FAA) hydrolase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141]
D Lbys_1775 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00500 Starch and sucrose metabolism [PATH:lby00500]
D Lbys_0264 Sucrose-phosphate synthase., Sucrose-phosphate phosphatase K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]
D Lbys_2514 Glycoside hydrolase 97 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Lbys_0274 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_1260 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_2254 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Lbys_2950 glycoside hydrolase family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Lbys_2672 glycoside hydrolase family 9 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Lbys_2468 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Lbys_0668 NUDIX hydrolase K18447 NUDX14; ADP-sugar diphosphatase [EC:3.6.1.21]
D Lbys_3197 glycogen synthase (UDP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21]
D Lbys_2865 Glycogen(starch) synthase K00693 GYS; glycogen synthase [EC:2.4.1.11]
D Lbys_3517 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Lbys_2308 alpha amylase catalytic region K01176 AMY; alpha-amylase [EC:3.2.1.1]
D Lbys_3382 Glycoside hydrolase 97 K21574 susB; glucan 1,4-alpha-glucosidase [EC:3.2.1.3]
D Lbys_1730 trehalose synthase-fused maltokinase-like protein K16146 pep2; maltokinase [EC:2.7.1.175]
D Lbys_0489 glycosyl transferase group 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Lbys_0586 maltose phosphorylase K00691 mapA; maltose phosphorylase [EC:2.4.1.8]
D Lbys_0589 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D Lbys_2792 Alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_2938 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Lbys_3384 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Lbys_3085 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lby00520]
D Lbys_2911 glycoside hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D Lbys_2580 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Lbys_1451 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Lbys_1703 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_2160 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_1408 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Lbys_2169 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Lbys_3085 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Lbys_3195 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Lbys_3004 glucokinase regulatory-like protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D Lbys_2556 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D Lbys_1769 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Lbys_3111 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Lbys_0845 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Lbys_2512 alpha-L-arabinofuranosidase domain protein K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D Lbys_2511 alpha-L-arabinofuranosidase domain protein K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D Lbys_2326 Alpha-N-arabinofuranosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Lbys_2938 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_0096 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Lbys_2575 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Lbys_1312 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Lbys_2466 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Lbys_3384 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Lbys_2840 mannose-6-phosphate isomerase, type 2 K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Lbys_3342 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Lbys_2011 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Lbys_2927 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Lbys_2464 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Lbys_2899 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Lbys_2468 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Lbys_2467 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
C 00620 Pyruvate metabolism [PATH:lby00620]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Lbys_2059 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Lbys_1402 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Lbys_1333 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2028 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Lbys_0311 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Lbys_1689 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Lbys_1690 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Lbys_2572 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_1257 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Lbys_2339 L-lactate dehydrogenase (cytochrome) K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D Lbys_3398 FAD linked oxidase domain protein K18930 dld; D-lactate dehydrogenase
D Lbys_1466 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Lbys_0237 Rhodanese domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Lbys_0973 Rhodanese domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Lbys_0673 allosteric NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Lbys_1285 malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D Lbys_1017 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Lbys_2010 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Lbys_0454 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_2027 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lby00630]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Lbys_3325 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Lbys_0075 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_1757 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Lbys_1917 carboxyl transferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D Lbys_1916 methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Lbys_1881 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Lbys_0888 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1143 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1737 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Lbys_3209 glycine dehydrogenase (decarboxylating) beta subunit; glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Lbys_2552 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_0445 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Lbys_1767 Xylose isomerase domain-containing protein TIM barrel K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D Lbys_3135 Xylose isomerase domain-containing protein TIM barrel K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D Lbys_3086 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Lbys_1616 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Lbys_2666 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:lby00640]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_1290 quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Lbys_0311 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Lbys_1689 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Lbys_1690 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Lbys_2572 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Lbys_1917 carboxyl transferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D Lbys_1757 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Lbys_1916 methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Lbys_1105 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Lbys_1574 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Lbys_0017 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Lbys_1178 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:lby00650]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_2827 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Lbys_2048 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Lbys_2047 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Lbys_0226 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Lbys_1257 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Lbys_2972 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Lbys_2963 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Lbys_2274 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Lbys_2275 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:lby00660]
D Lbys_2274 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Lbys_2275 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Lbys_1105 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Lbys_1574 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Lbys_2678 (R)-citramalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D Lbys_2680 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Lbys_2679 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Lbys_2677 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:lby00562]
D Lbys_1009 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Lbys_2889 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D Lbys_0019 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Lbys_1268 oxidoreductase domain protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Lbys_0018 2-keto-myo-inositol dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D Lbys_0015 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D Lbys_0013 5-deoxyglucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D Lbys_0014 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D Lbys_0017 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Lbys_2063 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:lby00190]
D Lbys_1322 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Lbys_3220 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Lbys_3221 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Lbys_1321 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Lbys_3222 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Lbys_0643 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Lbys_3223 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Lbys_0475 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Lbys_3224 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Lbys_3225 NADH dehydrogenase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Lbys_3226 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Lbys_3227 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Lbys_3176 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Lbys_3228 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Lbys_3229 NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Lbys_0703 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Lbys_2787 NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Lbys_3393 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Lbys_2786 NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Lbys_3392 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Lbys_2785 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Lbys_3391 NADH/Ubiquinone/plastoquinone (complex I) K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Lbys_2784 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Lbys_0704 NADH-ubiquinone oxidoreductase chain 4L K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]
D Lbys_2555 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Lbys_2048 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Lbys_2047 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Lbys_2193 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Lbys_2196 hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D Lbys_2194 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Lbys_2195 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Lbys_2191 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Lbys_2190 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Lbys_2192 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Lbys_0331 Cytochrome-c oxidase K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Lbys_0332 cytochrome C oxidase mono-heme subunit/FixO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Lbys_2760 cytochrome c oxidase, cbb3-type, subunit I K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9]
D Lbys_2758 cytochrome c class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Lbys_1152 cytochrome c class I K08738 CYC; cytochrome c
D Lbys_1612 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Lbys_2770 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Lbys_1611 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Lbys_3609 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Lbys_2771 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Lbys_3612 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Lbys_3610 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Lbys_3611 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Lbys_3595 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Lbys_2691 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:lby00710]
D Lbys_3021 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Lbys_0926 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Lbys_0012 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_3010 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_0665 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Lbys_1197 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Lbys_1198 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Lbys_0696 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Lbys_2063 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Lbys_3454 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Lbys_0071 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Lbys_2010 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Lbys_0454 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Lbys_0673 allosteric NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:lby00720]
D Lbys_2010 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Lbys_1017 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Lbys_2048 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Lbys_2047 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Lbys_1574 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Lbys_1105 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_3113 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Lbys_0075 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Lbys_0311 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Lbys_1689 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Lbys_1690 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Lbys_2572 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Lbys_1757 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Lbys_1916 methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Lbys_3183 5; methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Lbys_3037 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:lby00680]
D Lbys_1737 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Lbys_0613 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Lbys_2010 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Lbys_0012 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_3010 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Lbys_0665 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_2731 protein of unknown function DUF224 cysteine-rich region domain protein K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Lbys_1671 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Lbys_0229 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0364 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_1245 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0633 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_1176 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_3154 phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19]
D Lbys_2736 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:lby00910]
D Lbys_1206 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Lbys_2795 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Lbys_1261 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Lbys_0888 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1143 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1543 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Lbys_1542 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Lbys_3180 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D Lbys_1931 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:lby00920]
D Lbys_1795 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Lbys_1794 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Lbys_2673 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Lbys_1793 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Lbys_2562 flavodoxin/nitric oxide synthase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D Lbys_1790 Ferredoxin--nitrite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D Lbys_2471 transferase hexapeptide repeat containing protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Lbys_0477 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Lbys_3238 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Lbys_0315 Cys/Met metabolism pyridoxal-phosphate-dependent protein K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:lby00061]
D Lbys_0311 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Lbys_1689 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Lbys_1690 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Lbys_2572 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Lbys_2369 acyl carrier protein K02078 acpP; acyl carrier protein
D Lbys_1476 hypothetical protein K02078 acpP; acyl carrier protein
D Lbys_1496 acyl-carrier protein-like protein K02078 acpP; acyl carrier protein
D Lbys_2499 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Lbys_2790 Beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Lbys_1508 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Lbys_1686 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Lbys_1475 3-oxoacyl-(acyl-carrier-protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Lbys_1498 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Lbys_2368 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1171 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1495 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1474 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1568 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0190 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0192 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0212 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1004 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2006 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2452 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1489 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Lbys_1662 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D Lbys_2165 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Lbys_3166 Acyl-(acyl-carrier-protein) desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D Lbys_2080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_1762 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:lby00071]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_2828 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Lbys_2827 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Lbys_1240 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_1028 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_2080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_1762 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:lby00561]
D Lbys_3086 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2291 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Lbys_1685 phosphate:acyl-(acyl carrier protein) acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Lbys_2026 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Lbys_2810 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_3165 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_2822 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_3049 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:lby00564]
D Lbys_2041 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Lbys_1564 Glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Lbys_2026 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Lbys_2810 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_3165 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_2822 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_3049 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Lbys_2889 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D Lbys_2251 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Lbys_0677 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Lbys_1235 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Lbys_0368 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Lbys_3232 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Lbys_1467 CDP-diacylglycerol/serineO-phosphatidyltransfera se K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Lbys_2286 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Lbys_2103 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
D Lbys_2889 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:lby00600]
D Lbys_0352 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Lbys_1703 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_2160 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:lby00592]
D Lbys_2828 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:lby01040]
D Lbys_3166 Acyl-(acyl-carrier-protein) desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D Lbys_1205 Choloyl-CoA hydrolase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:lby00230]
D Lbys_0236 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Lbys_0668 NUDIX hydrolase K18447 NUDX14; ADP-sugar diphosphatase [EC:3.6.1.21]
D Lbys_0221 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_0088 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Lbys_2013 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Lbys_3363 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Lbys_0596 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Lbys_0996 phosphoribosylformylglycinamidine synthase subunit II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D Lbys_1468 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Lbys_3050 Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Lbys_0998 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Lbys_0999 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Lbys_1598 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Lbys_2961 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Lbys_2838 Phosphoribosylaminoimidazolecarboxamideformyltra nsferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Lbys_0234 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Lbys_1487 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Lbys_0217 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Lbys_1592 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Lbys_2873 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Lbys_2896 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Lbys_2546 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Lbys_0347 aldehyde oxidase and xanthine dehydrogenase a/b hammerhead K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D Lbys_0346 molybdopterin dehydrogenase FAD-binding protein K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D Lbys_0345 (2Fe-2S)-binding domain-containing protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D Lbys_1213 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Lbys_1090 CMP/dCMP deaminase zinc-binding protein K01487 guaD; guanine deaminase [EC:3.5.4.3]
D Lbys_1680 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Lbys_2209 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2076 ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2162 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2075 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Lbys_2281 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Lbys_2901 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Lbys_2933 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Lbys_1167 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Lbys_0239 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Lbys_1798 adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Lbys_2930 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Lbys_0233 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D Lbys_1696 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D Lbys_0658 Adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D Lbys_3218 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Lbys_1795 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Lbys_1794 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:lby00240]
D Lbys_0223 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Lbys_1909 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Lbys_0642 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Lbys_0446 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Lbys_2701 amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Lbys_2724 dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D Lbys_0042 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Lbys_3332 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Lbys_3089 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Lbys_2896 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Lbys_0638 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Lbys_1289 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Lbys_3481 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Lbys_3067 phosphoribulokinase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Lbys_0234 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Lbys_1298 purine or other phosphorylase family 1 K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D Lbys_3338 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Lbys_1933 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Lbys_1119 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Lbys_1299 CMP/dCMP deaminase zinc-binding protein K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Lbys_2209 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2076 ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2162 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2075 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Lbys_2281 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Lbys_0233 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D Lbys_1023 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Lbys_3249 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Lbys_0885 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:lby00250]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_0473 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Lbys_0436 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Lbys_1513 Beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Lbys_0079 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Lbys_2925 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D Lbys_1597 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Lbys_1668 alanine dehydrogenase/PNT domain protein K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Lbys_2279 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Lbys_2918 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Lbys_2930 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Lbys_2961 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Lbys_0642 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Lbys_0226 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Lbys_1543 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Lbys_1542 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Lbys_2795 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Lbys_1261 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Lbys_3137 delta-1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D Lbys_0888 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1143 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_0223 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Lbys_1909 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Lbys_3195 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Lbys_2013 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:lby00260]
D Lbys_2056 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Lbys_0631 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Lbys_2656 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Lbys_0630 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Lbys_1908 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Lbys_1431 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Lbys_1737 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Lbys_3086 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Lbys_1671 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Lbys_0229 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0364 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_1245 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0633 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_1176 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_2773 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D Lbys_3455 Glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D Lbys_3209 glycine dehydrogenase (decarboxylating) beta subunit; glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Lbys_2552 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_0445 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Lbys_1467 CDP-diacylglycerol/serineO-phosphatidyltransfera se K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Lbys_1842 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Lbys_2830 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Lbys_1967 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Lbys_2384 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:lby00270]
D Lbys_2471 transferase hexapeptide repeat containing protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Lbys_0477 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Lbys_0607 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Lbys_0863 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Lbys_2089 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Lbys_1573 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Lbys_2881 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D Lbys_2767 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Lbys_1325 Pyridoxal-5'-phosphate-dependent protein beta subunit K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D Lbys_2056 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Lbys_0631 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Lbys_2656 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Lbys_3238 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Lbys_2373 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Lbys_0315 Cys/Met metabolism pyridoxal-phosphate-dependent protein K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Lbys_1944 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_2671 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1077 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_1576 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Lbys_1842 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Lbys_0039 cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D Lbys_0229 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0364 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_1245 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0633 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_1176 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:lby00280]
D Lbys_1944 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_2671 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1077 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2828 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Lbys_1917 carboxyl transferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D Lbys_1757 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Lbys_1916 methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Lbys_0017 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2972 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Lbys_2963 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lby00290]
D Lbys_2830 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Lbys_2678 (R)-citramalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D Lbys_2680 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Lbys_2679 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Lbys_2677 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Lbys_2274 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Lbys_2275 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Lbys_2276 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Lbys_2273 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Lbys_1944 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_2671 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1077 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1597 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Lbys_2027 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:lby00300]
D Lbys_2056 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Lbys_0631 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Lbys_2656 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Lbys_0246 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Lbys_1087 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Lbys_1887 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Lbys_0935 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Lbys_0925 2,3,4,5-tetrahydropyridine-2,6-carboxylateN-succ inyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Lbys_1951 aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Lbys_3407 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Lbys_1029 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Lbys_2299 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Lbys_2304 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Lbys_1563 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
C 00310 Lysine degradation [PATH:lby00310]
D Lbys_0249 Aldehyde Dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D Lbys_3489 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3580 catalytic domain-containing protein of components of various dehydrogenase complexes K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_1240 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_1028 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_0226 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Lbys_3394 FAD dependent oxidoreductase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:lby00220]
D Lbys_2279 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Lbys_2918 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Lbys_1030 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Lbys_0888 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1143 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_0223 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Lbys_1909 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Lbys_2795 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Lbys_1261 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_1597 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Lbys_2092 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Lbys_1952 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Lbys_1951 aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Lbys_2737 peptidase M20 K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:lby00330]
D Lbys_0626 Orn/DAP/Arg decarboxylase 2 K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Lbys_1181 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D Lbys_1544 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D Lbys_1406 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2951 ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D Lbys_1718 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Lbys_0766 Proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D Lbys_3137 delta-1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D Lbys_3174 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Lbys_1954 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Lbys_3606 alpha/beta hydrolase fold protein K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:lby00340]
D Lbys_3585 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Lbys_2393 phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D Lbys_2915 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Lbys_2916 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Lbys_2914 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Lbys_0035 imidazoleglycerol-phosphate dehydratase; histidinol-phosphate phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D Lbys_0732 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Lbys_3586 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Lbys_1782 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D Lbys_1473 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D Lbys_1783 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D Lbys_1784 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D Lbys_1785 Arginase/agmatinase/formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:lby00350]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_0732 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Lbys_3501 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Lbys_3502 homogentisate 12-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D Lbys_3503 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D Lbys_0226 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:lby00360]
D Lbys_0242 Aromatic amino acid hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D Lbys_1482 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Lbys_0771 Oxidoreductase FAD-binding domain protein K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D Lbys_1920 oxidoreductase FAD/NAD(P)-binding domain protein K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D Lbys_1651 Enoyl-CoA hydratase/isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_0732 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Lbys_3501 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Lbys_1777 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Lbys_2813 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:lby00380]
D Lbys_3489 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3580 catalytic domain-containing protein of components of various dehydrogenase complexes K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_1240 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_1028 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_1646 tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_1881 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Lbys_2813 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lby00400]
D Lbys_0400 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Lbys_1928 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Lbys_1515 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Lbys_1606 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Lbys_1561 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Lbys_3024 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Lbys_2173 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Lbys_2174 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Lbys_2492 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Lbys_2385 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Lbys_2386 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Lbys_1967 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Lbys_2384 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Lbys_0057 chorismate mutase; prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Lbys_0765 DAHP synthetase I/KDSA K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D Lbys_1216 Prephenate dehydrogenase (NADP(+)) K00211 TYR1; prephenate dehydrogenase (NADP+) [EC:1.3.1.13]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_0732 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Lbys_0242 Aromatic amino acid hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:lby00410]
D Lbys_1175 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_3190 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Lbys_0017 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:lby00430]
D Lbys_2774 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_3060 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_1668 alanine dehydrogenase/PNT domain protein K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
D Lbys_2998 beta-lactamase domain protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:lby00450]
D Lbys_0607 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Lbys_0863 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Lbys_2089 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Lbys_0844 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Lbys_1281 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Lbys_1795 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Lbys_1794 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Lbys_2713 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:lby00460]
D Lbys_0274 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_1260 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_2774 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_3060 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_0436 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Lbys_1513 Beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Lbys_1737 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:lby00470]
D Lbys_1563 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D Lbys_3538 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Lbys_3080 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D Lbys_3407 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Lbys_1029 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Lbys_1776 proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D Lbys_1774 dihydrodipicolinate synthetase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D Lbys_1775 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D Lbys_1777 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:lby00480]
D Lbys_2774 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_3060 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_1226 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D Lbys_0876 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D Lbys_1225 Allophanate hydrolase subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D Lbys_1133 glutamate--cysteine ligase GCS2 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D Lbys_2573 peptidase M17 leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Lbys_0469 Peptidase M1 membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Lbys_3113 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Lbys_1247 Peroxiredoxin K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:lby00511]
D Lbys_0352 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Lbys_1703 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_2160 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_2488 coagulation factor 5/8 type domain protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_2883 glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_1665 glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_2585 glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_2323 Alpha-L-fucosidase K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
D Lbys_3241 Alpha-L-fucosidase K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
D Lbys_1666 asparaginase K01444 AGA; N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
C 00540 Lipopolysaccharide biosynthesis [PATH:lby00540]
D Lbys_1661 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Lbys_1662 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D Lbys_1663 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Lbys_2996 metallophosphoesterase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Lbys_1745 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Lbys_0735 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Lbys_0472 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Lbys_2370 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Lbys_3433 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Lbys_0068 3-deoxy-D-manno-octulosonatecytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Lbys_2116 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Lbys_1157 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
C 00542 O-Antigen repeat unit biosynthesis [PATH:lby00542]
D Lbys_1214 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lby00541]
D Lbys_1312 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Lbys_2466 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Lbys_0096 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Lbys_1314 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Lbys_0097 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_1313 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_3333 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Lbys_0742 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Lbys_2468 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Lbys_2467 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D Lbys_2840 mannose-6-phosphate isomerase, type 2 K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Lbys_3342 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Lbys_2011 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Lbys_2927 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Lbys_2464 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Lbys_2899 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Lbys_0845 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:lby00550]
D Lbys_1769 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Lbys_3111 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Lbys_2299 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Lbys_3538 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Lbys_2304 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Lbys_1563 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D Lbys_3170 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Lbys_0061 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Lbys_0318 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Lbys_2477 phospho-N-acetylmuramoyl-pentapeptide-transferas e K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Lbys_2036 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Lbys_1742 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Lbys_3465 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_2107 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_1222 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Lbys_2640 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Lbys_2485 peptidase S13 D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Lbys_0309 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:lby00552]
D Lbys_0061 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Lbys_0318 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Lbys_1214 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:lby00543]
D Lbys_1215 transferase hexapeptide repeat containing protein K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-]
D Lbys_1214 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Lbys_1672 membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D Lbys_1849 membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D Lbys_2471 transferase hexapeptide repeat containing protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Lbys_0477 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:lby00730]
D Lbys_0381 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Lbys_2866 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lbys_3482 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D Lbys_1893 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Lbys_0383 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Lbys_0382 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Lbys_1401 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Lbys_1653 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Lbys_2088 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Lbys_2161 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D Lbys_3218 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Lbys_0380 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:lby00740]
D Lbys_1704 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Lbys_2837 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Lbys_2057 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Lbys_1411 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Lbys_0059 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Lbys_0383 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Lbys_0236 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:lby00750]
D Lbys_1433 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D Lbys_0710 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D Lbys_0633 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_1176 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_3509 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D Lbys_1908 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:lby00760]
D Lbys_0473 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Lbys_2588 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Lbys_2650 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Lbys_1487 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Lbys_0217 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Lbys_0234 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Lbys_1681 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Lbys_1581 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Lbys_0083 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Lbys_3163 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Lbys_0226 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:lby00770]
D Lbys_2274 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Lbys_2275 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Lbys_2276 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Lbys_2273 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Lbys_2985 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Lbys_1995 Ketopantoate reductase ApbA/PanE domain protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Lbys_3190 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Lbys_1682 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Lbys_1442 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Lbys_3395 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Lbys_3262 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Lbys_0024 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Lbys_1486 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Lbys_3188 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Lbys_1022 protein of unknown function DUF479 K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D Lbys_1944 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_2671 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1077 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1175 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:lby00780]
D Lbys_1475 3-oxoacyl-(acyl-carrier-protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Lbys_1498 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Lbys_2368 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1171 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1495 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1474 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1568 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0190 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0192 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0212 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1004 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2006 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2452 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1489 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Lbys_2165 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Lbys_0495 serine palmitoyltransferase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Lbys_1751 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:lby00785]
D Lbys_3079 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Lbys_1572 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Lbys_0862 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2059 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Lbys_1402 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Lbys_1333 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Lbys_3488 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Lbys_3489 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3580 catalytic domain-containing protein of components of various dehydrogenase complexes K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Lbys_3209 glycine dehydrogenase (decarboxylating) beta subunit; glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Lbys_2552 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Lbys_0445 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:lby00790]
D Lbys_0690 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Lbys_2088 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Lbys_3185 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Lbys_1116 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Lbys_1609 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Lbys_2007 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Lbys_0928 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Lbys_1704 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Lbys_3208 Chorismate binding protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D Lbys_3207 hypothetical protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D Lbys_1746 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Lbys_0691 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Lbys_0242 Aromatic amino acid hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D Lbys_1123 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Lbys_1158 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:lby00670]
D Lbys_2007 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Lbys_3183 5; methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Lbys_1737 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Lbys_0596 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Lbys_2838 Phosphoribosylaminoimidazolecarboxamideformyltra nsferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Lbys_2298 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Lbys_2552 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Lbys_0863 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Lbys_0885 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Lbys_2666 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Lbys_3037 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Lbys_2540 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:lby00860]
D Lbys_0479 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Lbys_2750 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Lbys_0557 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Lbys_1956 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Lbys_0744 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Lbys_1726 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Lbys_2744 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Lbys_0733 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D Lbys_1320 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D Lbys_1279 Uncharacterized protein family UPF0093 K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D Lbys_2014 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Lbys_1791 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Lbys_1792 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Lbys_2193 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Lbys_2192 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Lbys_3572 ATP/cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lby00130]
D Lbys_2723 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Lbys_0747 Chorismate binding protein K02361 entC; isochorismate synthase [EC:5.4.4.2]
D Lbys_2454 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylic-acidsynthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D Lbys_2879 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D Lbys_1329 AMP-dependent synthetase and ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D Lbys_2851 1,4-Dihydroxy-2-naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D Lbys_3104 thioesterase superfamily protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D Lbys_1248 1,4-dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Lbys_0708 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Lbys_0773 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Lbys_3192 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Lbys_0897 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Lbys_3501 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:lby00900]
D Lbys_1893 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Lbys_2371 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Lbys_0452 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Lbys_3350 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Lbys_0245 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Lbys_1124 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Lbys_2861 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_2872 isopentenyl-diphosphate delta-isomerase, type 1 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Lbys_3438 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Lbys_2917 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Lbys_3170 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:lby00907]
D Lbys_2972 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Lbys_2828 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Lbys_1197 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Lbys_1198 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:lby00523]
D Lbys_1314 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Lbys_0097 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_1313 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_3333 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Lbys_0742 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D Lbys_0747 Chorismate binding protein K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D Lbys_0097 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_1313 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:lby00946]
D Lbys_0274 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_1260 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_1755 alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D Lbys_1754 alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D Lbys_2344 alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:lby00311]
D Lbys_3063 peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D Lbys_3545 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Lbys_3505 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:lby00332]
D Lbys_3174 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Lbys_1954 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:lby00261]
D Lbys_1795 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Lbys_1794 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Lbys_2056 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Lbys_0631 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Lbys_2656 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Lbys_0246 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Lbys_1087 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Lbys_1887 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Lbys_0935 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:lby00521]
D Lbys_2938 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Lbys_1694 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Lbys_1009 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Lbys_0019 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Lbys_1268 oxidoreductase domain protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Lbys_1314 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Lbys_0097 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_1313 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_3333 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Lbys_0742 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Lbys_2938 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:lby00525]
D Lbys_1314 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Lbys_0097 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Lbys_1313 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:lby00401]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_0732 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Lbys_2173 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Lbys_2174 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Lbys_2499 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Lbys_1474 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1568 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0190 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0192 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0212 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1004 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2006 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2452 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2165 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Lbys_2369 acyl carrier protein K02078 acpP; acyl carrier protein
D Lbys_1476 hypothetical protein K02078 acpP; acyl carrier protein
D Lbys_1496 acyl-carrier protein-like protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:lby00999]
D Lbys_1573 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Lbys_0274 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Lbys_1260 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:lby00362]
D Lbys_2828 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Lbys_0962 intradiol ring-cleavage dioxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D Lbys_2827 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Lbys_1240 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_1028 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation [PATH:lby00364]
D Lbys_3605 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:lby00625]
D Lbys_0218 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Lbys_2891 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:lby00361]
D Lbys_3605 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:lby00623]
D Lbys_3605 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D Lbys_2828 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:lby00643]
D Lbys_3502 homogentisate 12-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D Lbys_3503 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
D Lbys_1448 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
D Lbys_0962 intradiol ring-cleavage dioxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:lby03020]
D Lbys_2620 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Lbys_2621 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Lbys_1803 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:lby03010]
D Lbys_2577 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D Lbys_2854 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Lbys_1824 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Lbys_1804 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Lbys_1813 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Lbys_3020 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Lbys_1935 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Lbys_1816 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Lbys_2853 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Lbys_3351 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Lbys_1805 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Lbys_1936 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Lbys_1806 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Lbys_1817 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Lbys_0941 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Lbys_0892 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Lbys_1821 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Lbys_3019 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Lbys_1826 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Lbys_1234 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Lbys_1308 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Lbys_2612 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Lbys_1827 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Lbys_1830 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Lbys_1829 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Lbys_1818 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Lbys_1815 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Lbys_2614 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Lbys_3018 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Lbys_2613 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Lbys_2611 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Lbys_2852 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Lbys_1820 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Lbys_1811 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Lbys_1823 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Lbys_1802 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Lbys_1814 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Lbys_3408 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Lbys_1154 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Lbys_0883 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Lbys_1825 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Lbys_1828 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Lbys_1819 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Lbys_0087 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Lbys_0882 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Lbys_1418 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Lbys_1822 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Lbys_1812 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Lbys_1177 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Lbys_1684 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Lbys_2908 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Lbys_3199 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Lbys_1155 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Lbys_1807 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Lbys_R0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0043 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0045 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0027 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0026 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:lby00970]
D Lbys_R0039 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Lbys_R0019 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Lbys_R0023 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0050 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Lbys_R0025 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Lbys_R0036 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Lbys_R0018 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Lbys_R0051 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Lbys_R0009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Lbys_R0053 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Lbys_R0032 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Lbys_R0034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Lbys_R0054 tRNA-His K14226 tRNA-His; tRNA His
D Lbys_R0028 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Lbys_R0044 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Lbys_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0042 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0006 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Lbys_R0013 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Lbys_R0012 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Lbys_R0015 tRNA-Met K14230 tRNA-Met; tRNA Met
D Lbys_R0007 tRNA-Met K14230 tRNA-Met; tRNA Met
D Lbys_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D Lbys_R0041 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Lbys_R0003 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Lbys_R0005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Lbys_R0024 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Lbys_R0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Lbys_R0008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Lbys_R0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Lbys_R0021 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Lbys_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Lbys_R0031 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Lbys_R0030 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Lbys_R0033 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Lbys_R0047 tRNA-Val K14237 tRNA-Val; tRNA Val
D Lbys_R0048 tRNA-Val K14237 tRNA-Val; tRNA Val
D Lbys_0479 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Lbys_1579 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Lbys_1720 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Lbys_2811 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Lbys_1650 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Lbys_3514 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Lbys_3169 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Lbys_3177 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Lbys_0759 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Lbys_3527 Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Lbys_2055 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Lbys_2875 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Lbys_2713 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Lbys_2298 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Lbys_2541 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Lbys_0592 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Lbys_2118 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Lbys_1773 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Lbys_1710 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Lbys_3035 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Lbys_0603 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Lbys_1707 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Lbys_1902 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Lbys_3568 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Lbys_0317 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:lby03060]
D Lbys_1810 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Lbys_2293 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Lbys_1145 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Lbys_2814 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D Lbys_0755 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Lbys_0559 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Lbys_3422 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Lbys_2016 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Lbys_R0001 RNA component of signal recognition particle K01983 ffs; SRP RNA
D Lbys_2382 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Lbys_1578 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Lbys_1736 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D Lbys_0622 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Lbys_0767 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:lby04122]
D Lbys_2866 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lbys_1208 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:lby03018]
D Lbys_0613 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Lbys_0940 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Lbys_0092 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2844 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2266 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_0388 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2012 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2458 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Lbys_0676 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Lbys_0471 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Lbys_1113 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Lbys_3406 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Lbys_1899 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_0731 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Lbys_1303 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Lbys_2691 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Lbys_3330 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:lby03030]
D Lbys_2788 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_3145 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0129 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_1156 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Lbys_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Lbys_3029 DNA polymerase III gamma/tau subunits-like protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Lbys_1021 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Lbys_2252 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Lbys_2104 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Lbys_1026 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Lbys_2071 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Lbys_3147 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0143 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_3537 ribonuclease H-related protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Lbys_2287 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Lbys_0657 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Lbys_3053 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:lby03410]
D Lbys_1405 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Lbys_0569 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Lbys_2920 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Lbys_0667 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Lbys_2593 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Lbys_0657 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Lbys_2498 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Lbys_3053 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:lby03420]
D Lbys_2604 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Lbys_2733 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Lbys_1527 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Lbys_1656 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Lbys_0072 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Lbys_1677 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Lbys_0657 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Lbys_3053 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:lby03430]
D Lbys_1756 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Lbys_3039 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Lbys_1890 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Lbys_1677 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Lbys_2498 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Lbys_3147 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0143 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_1156 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Lbys_2252 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Lbys_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Lbys_1021 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Lbys_3029 DNA polymerase III gamma/tau subunits-like protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Lbys_2788 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_3145 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0129 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_3053 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:lby03440]
D Lbys_2498 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Lbys_3147 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0143 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_2060 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Lbys_2025 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Lbys_1264 recombination protein RecR K06187 recR; recombination protein RecR
D Lbys_0094 recA protein K03553 recA; recombination protein RecA
D Lbys_0657 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Lbys_0611 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Lbys_2859 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Lbys_0254 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Lbys_2777 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Lbys_1156 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Lbys_2252 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Lbys_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Lbys_1021 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Lbys_3029 DNA polymerase III gamma/tau subunits-like protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Lbys_2788 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_3145 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0129 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_2707 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:lby02010]
D Lbys_2154 ABC transporter related protein K05776 modF; molybdate transport system ATP-binding protein
D Lbys_2149 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Lbys_3075 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Lbys_3076 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Lbys_0053 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D Lbys_0052 ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Lbys_0794 hypothetical protein K20461 nukG; lantibiotic transport system permease protein
D Lbys_0795 ABC transporter related protein K20459 nukF; lantibiotic transport system ATP-binding protein
D Lbys_0468 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D Lbys_1427 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D Lbys_1212 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D Lbys_1106 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Lbys_1426 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Lbys_0750 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D Lbys_0751 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B
D Lbys_1660 ABC transporter related protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Lbys_0942 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D Lbys_2892 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D Lbys_2497 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Lbys_3552 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Lbys_0063 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Lbys_0070 ABC transporter related protein K09812 ftsE; cell division transport system ATP-binding protein
D Lbys_2669 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Lbys_0599 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Lbys_0619 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:lby03070]
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2814 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D Lbys_2293 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Lbys_1145 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Lbys_1810 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Lbys_0755 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Lbys_0559 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Lbys_3422 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Lbys_2382 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Lbys_2016 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Lbys_1578 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Lbys_1736 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:lby02020]
D Lbys_1733 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2729 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_3178 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2053 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2625 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2833 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2088 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Lbys_2644 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Lbys_2135 integral membrane sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Lbys_2134 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Lbys_2192 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Lbys_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Lbys_2834 two component transcriptional regulator, winged helix family K07672 trcR; two-component system, OmpR family, response regulator TrcR
D Lbys_1708 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Lbys_3093 TonB-dependent receptor plug K19611 fepA; ferric enterobactin receptor
D Lbys_2870 TonB-dependent receptor plug K19611 fepA; ferric enterobactin receptor
D Lbys_3404 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Lbys_0153 response regulator receiver protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Lbys_2338 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Lbys_1556 integral membrane sensor signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Lbys_1715 histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D Lbys_0888 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1143 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_0500 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_1841 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D Lbys_0746 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
D Lbys_1152 cytochrome c class I K08738 CYC; cytochrome c
D Lbys_0331 Cytochrome-c oxidase K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Lbys_0332 cytochrome C oxidase mono-heme subunit/FixO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Lbys_2760 cytochrome c oxidase, cbb3-type, subunit I K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9]
D Lbys_2758 cytochrome c class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_0615 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Lbys_1625 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D Lbys_0587 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D Lbys_2254 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Lbys_2950 glycoside hydrolase family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Lbys_2672 glycoside hydrolase family 9 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Lbys_2518 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D Lbys_2258 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D Lbys_2250 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D Lbys_2517 anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D Lbys_2249 anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D Lbys_2257 anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:lby02024]
D Lbys_2173 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Lbys_2174 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Lbys_2134 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Lbys_2080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_1762 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_3427 Mannan endo-1,4-beta-mannosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Lbys_2253 Mannan endo-1,4-beta-mannosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Lbys_2837 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Lbys_3250 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Lbys_1749 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_2565 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0868 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0861 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0559 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Lbys_2814 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D Lbys_2293 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Lbys_1145 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Lbys_1810 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Lbys_0755 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Lbys_3422 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Lbys_2382 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Lbys_2016 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Lbys_2889 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D Lbys_1128 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:lby02040]
D Lbys_1128 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Lbys_0939 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D Lbys_0746 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Lbys_0613 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:lby04980]
D Lbys_3572 ATP/cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Lbys_0453 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D Lbys_1916 methylmalonyl-CoA mutase, large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Lbys_0863 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:lby01501]
D Lbys_2580 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Lbys_1451 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Lbys_2152 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Lbys_1195 TonB family protein K02172 blaR1; bla regulator protein blaR1
D Lbys_1903 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_1196 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_2151 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_3545 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Lbys_3505 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Lbys_1878 regulatory protein TetR K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D Lbys_0859 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_0870 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1747 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2567 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1229 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2688 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_3122 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1228 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Lbys_1749 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_2565 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0868 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0861 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3465 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_2107 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_1222 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Lbys_2640 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:lby01502]
D Lbys_1708 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Lbys_3538 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Lbys_1563 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D Lbys_2304 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Lbys_2477 phospho-N-acetylmuramoyl-pentapeptide-transferas e K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Lbys_2036 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lby01503]
D Lbys_2148 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Lbys_2644 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Lbys_0859 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_0870 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1747 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2567 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1229 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2688 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_3122 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1228 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1661 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:lby01000]
C 01001 Protein kinases [BR:lby01001]
D Lbys_1412 PASTA domain containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Lbys_1733 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2729 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_3178 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2053 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2625 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2833 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2135 integral membrane sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Lbys_1556 integral membrane sensor signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Lbys_1715 histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D Lbys_1860 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_2959 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_3106 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_3125 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_1796 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Lbys_2617 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:lby01009]
D Lbys_2767 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_3181 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:lby01002]
D Lbys_0767 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Lbys_1213 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Lbys_1169 NLP/P60 protein K13695 nlpC; probable lipoprotein NlpC
D Lbys_2013 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Lbys_1543 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Lbys_3195 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Lbys_0079 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Lbys_3015 Abortive infection protein K07052 K07052; CAAX protease family protein
D Lbys_0469 Peptidase M1 membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Lbys_3578 peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D Lbys_2156 oligoendopeptidase, M3 family K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D Lbys_1708 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Lbys_3126 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Lbys_3344 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Lbys_1648 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Lbys_2782 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Lbys_0244 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Lbys_2573 peptidase M17 leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Lbys_3493 peptidase M19 renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Lbys_2765 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Lbys_1469 Peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D Lbys_2684 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Lbys_1809 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Lbys_1316 peptidase M24 K14213 PEPD; Xaa-Pro dipeptidase [EC:3.4.13.9]
D Lbys_1700 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Lbys_1968 peptidase M28 K00683 QPCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D Lbys_2046 peptidase M50 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Lbys_2152 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Lbys_1195 TonB family protein K02172 blaR1; bla regulator protein blaR1
D Lbys_2698 L-aminopeptidase DmpA K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D Lbys_2644 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin K13274 wprA; cell wall-associated protease [EC:3.4.21.-]
D Lbys_3027 peptidase S8 and S53 subtilisin kexin sedolisin K08651 E3.4.21.66; thermitase [EC:3.4.21.66]
D Lbys_1958 prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D Lbys_2150 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_1450 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_0480 Dipeptidyl-peptidase IV K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_2207 Oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D Lbys_2485 peptidase S13 D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Lbys_0309 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Lbys_2696 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Lbys_2913 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Lbys_0622 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Lbys_3606 alpha/beta hydrolase fold protein K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Lbys_2487 C-terminal processing peptidase-3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Lbys_3436 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Lbys_3201 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Lbys_2670 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Lbys_3069 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Lbys_1398 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-]
D Lbys_3108 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-]
D Lbys_3063 peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D Lbys_3156 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D Lbys_1891 Rhomboid family protein K07059 K07059; rhomboid family protein
D Lbys_0757 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Lbys_1332 ATP dependent peptidase CodWX, CodW component K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Lbys_1513 Beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Lbys_2774 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_3060 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Lbys_3550 collagenase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Lbys_3468 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein
D Lbys_3470 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:lby01003]
D Lbys_2651 Dolichyl-phosphate beta-D-mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Lbys_2865 Glycogen(starch) synthase K00693 GYS; glycogen synthase [EC:2.4.1.11]
D Lbys_3197 glycogen synthase (UDP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21]
D Lbys_0489 glycosyl transferase group 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Lbys_1742 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Lbys_3465 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_2107 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_1214 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:lby01005]
D Lbys_1661 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Lbys_1745 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Lbys_1662 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D Lbys_1663 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Lbys_2996 metallophosphoesterase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Lbys_0735 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Lbys_1157 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Lbys_2116 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Lbys_2370 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Lbys_0068 3-deoxy-D-manno-octulosonatecytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Lbys_3433 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Lbys_0472 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Lbys_0441 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Lbys_0443 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Lbys_1214 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lby01011]
D Lbys_1769 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Lbys_3111 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Lbys_2299 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Lbys_1563 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D Lbys_3538 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Lbys_0757 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Lbys_2477 phospho-N-acetylmuramoyl-pentapeptide-transferas e K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Lbys_2036 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Lbys_0061 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Lbys_0318 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Lbys_3465 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_2107 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Lbys_1222 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Lbys_2640 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Lbys_2485 peptidase S13 D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Lbys_0309 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Lbys_1742 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Lbys_1708 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Lbys_1469 Peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D Lbys_1580 Lytic transglycosylase catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Lbys_0602 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Lbys_3042 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Lbys_2148 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:lby01004]
D Lbys_2499 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Lbys_2790 Beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Lbys_1508 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Lbys_1686 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Lbys_1475 3-oxoacyl-(acyl-carrier-protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Lbys_1498 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Lbys_2368 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1171 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1495 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Lbys_1474 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1568 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0190 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0192 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_0212 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1004 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2006 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_2452 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Lbys_1489 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Lbys_1662 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D Lbys_2165 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Lbys_1205 Choloyl-CoA hydrolase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D Lbys_3166 Acyl-(acyl-carrier-protein) desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D Lbys_3134 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Lbys_2963 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Lbys_2080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_1762 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_1685 phosphate:acyl-(acyl carrier protein) acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Lbys_2026 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Lbys_2810 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_3165 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Lbys_2822 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:lby01006]
D Lbys_3438 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Lbys_2917 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Lbys_3170 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Lbys_3446 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Lbys_1282 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Lbys_1248 1,4-dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Lbys_2193 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:lby01007]
D Lbys_0479 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Lbys_1650 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Lbys_3568 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Lbys_0317 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Lbys_2875 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Lbys_1710 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Lbys_2713 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Lbys_2118 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Lbys_2541 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Lbys_0592 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Lbys_1773 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Lbys_3169 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Lbys_3177 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Lbys_0603 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Lbys_0759 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Lbys_2055 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Lbys_3035 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Lbys_3527 Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Lbys_3514 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Lbys_1707 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Lbys_1902 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Lbys_2637 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Lbys_1597 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Lbys_2742 2-keto-4-methylthiobutyrate aminotransferase apoenzyme K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D Lbys_0732 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Lbys_2773 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D Lbys_3455 Glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D Lbys_0495 serine palmitoyltransferase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Lbys_0607 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Lbys_2951 ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D Lbys_1951 aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Lbys_0557 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Lbys_1944 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_2671 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_1077 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Lbys_0633 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Lbys_1176 aminotransferase class V K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:lby00194]
D Lbys_2771 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Lbys_2770 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Lbys_1611 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Lbys_1612 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Lbys_3609 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Lbys_3610 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Lbys_3611 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Lbys_3612 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:lby03000]
D Lbys_0189 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Lbys_0197 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Lbys_2182 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Lbys_2379 transcriptional regulator, AraC family K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D Lbys_0123 transcriptional regulator, AraC family K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D Lbys_0195 transcriptional regulator, AraC family K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D Lbys_0199 transcriptional regulator, AraC family K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D Lbys_0716 transcription activator effector binding protein K13653 K13653; AraC family transcriptional regulator
D Lbys_0113 DNA-O6-methylguanine--protein-cysteine S-methyltransferase; Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Lbys_2812 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Lbys_0356 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Lbys_0003 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lbys_2320 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lbys_1645 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lbys_2941 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lbys_3381 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Lbys_2778 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Lbys_1089 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Lbys_1878 regulatory protein TetR K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D Lbys_1172 regulatory protein TetR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Lbys_0806 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Lbys_1702 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Lbys_0864 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Lbys_1717 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Lbys_1590 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Lbys_2045 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Lbys_0800 putative transcription regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Lbys_2931 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Lbys_2936 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Lbys_3597 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Lbys_2797 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Lbys_0944 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Lbys_0985 putative transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Lbys_1242 putative transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Lbys_0632 transcriptional regulator, ArsR family K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D Lbys_0880 transcriptional regulator, XRE family K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Lbys_2903 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D Lbys_2139 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Lbys_1903 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_1196 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_2151 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_1751 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Lbys_0954 transcriptional regulator K07727 K07727; putative transcriptional regulator
D Lbys_1359 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator
D Lbys_0937 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lbys_2073 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lbys_2805 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D Lbys_0380 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Lbys_1210 PspC domain protein K03973 pspC; phage shock protein C
D Lbys_3157 PspC domain protein K03973 pspC; phage shock protein C
D Lbys_3160 PspC domain protein K03973 pspC; phage shock protein C
D Lbys_1933 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Lbys_1119 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Lbys_2554 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Lbys_2769 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:lby03021]
D Lbys_1803 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Lbys_2620 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Lbys_2621 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Lbys_0939 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D Lbys_1199 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Lbys_3563 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Lbys_2030 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Lbys_1520 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Lbys_2518 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D Lbys_2258 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D Lbys_2250 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D Lbys_0746 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
D Lbys_1584 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Lbys_0753 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Lbys_2294 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Lbys_2769 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Lbys_2717 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Lbys_3406 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:lby03019]
D Lbys_2923 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D Lbys_2367 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Lbys_1899 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Lbys_2458 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Lbys_1911 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Lbys_0092 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2844 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2266 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_0388 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_2012 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Lbys_0676 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Lbys_0471 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Lbys_1113 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Lbys_0613 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Lbys_0940 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Lbys_3406 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Lbys_1517 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Lbys_0731 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Lbys_1303 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Lbys_2691 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Lbys_3330 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:lby03011]
D Lbys_2577 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D Lbys_2854 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Lbys_1824 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Lbys_1804 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Lbys_1813 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Lbys_3020 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Lbys_1935 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Lbys_1816 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Lbys_2853 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Lbys_3351 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Lbys_1805 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Lbys_1936 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Lbys_1806 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Lbys_1817 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Lbys_0941 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Lbys_0892 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Lbys_1821 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Lbys_3019 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Lbys_1826 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Lbys_1234 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Lbys_1308 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Lbys_2612 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Lbys_1827 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Lbys_1830 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Lbys_1829 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Lbys_1818 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Lbys_1815 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Lbys_3018 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Lbys_2613 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Lbys_2611 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Lbys_2614 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Lbys_2852 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Lbys_1820 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Lbys_1811 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Lbys_1823 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Lbys_1802 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Lbys_1814 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Lbys_3408 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Lbys_1154 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Lbys_0883 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Lbys_1825 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Lbys_1828 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Lbys_1819 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Lbys_0882 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Lbys_1418 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Lbys_1822 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Lbys_1812 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Lbys_1177 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Lbys_1684 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Lbys_2908 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Lbys_3199 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Lbys_1155 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Lbys_1807 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Lbys_0087 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Lbys_R0026 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0043 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0045 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0027 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:lby03009]
D Lbys_2367 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Lbys_2842 GTP-binding protein Era K03595 era; GTPase
D Lbys_3219 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Lbys_2769 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Lbys_1584 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Lbys_0753 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Lbys_2294 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Lbys_1291 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Lbys_0228 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Lbys_0890 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Lbys_1927 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Lbys_2638 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Lbys_1525 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Lbys_1005 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Lbys_3309 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Lbys_0570 rRNA (guanine-N(2)-)-methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Lbys_1536 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Lbys_0761 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Lbys_0608 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Lbys_3366 RNA-binding S4 domain protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Lbys_1734 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Lbys_2372 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Lbys_1326 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Lbys_1566 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Lbys_0893 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Lbys_2022 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Lbys_2178 (LSU ribosomal protein L11P)-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Lbys_2923 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D Lbys_2781 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Lbys_0676 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Lbys_1653 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Lbys_2667 ribosome-associated GTPase EngA K03977 engA; GTPase
D Lbys_2544 GTP-binding protein HflX K03665 hflX; GTPase
D Lbys_1014 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Lbys_2933 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Lbys_0467 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Lbys_1583 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Lbys_1752 iojap-like protein K09710 ybeB; ribosome-associated protein
D Lbys_1166 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Lbys_3203 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D Lbys_3466 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Lbys_1683 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:lby03016]
D Lbys_3515 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Lbys_1911 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Lbys_0479 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Lbys_3035 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Lbys_2118 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Lbys_0592 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Lbys_2713 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Lbys_1650 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Lbys_1710 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Lbys_1773 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Lbys_3169 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Lbys_3514 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Lbys_3177 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Lbys_0759 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Lbys_3527 Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Lbys_2055 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Lbys_2875 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Lbys_2541 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Lbys_0603 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Lbys_1707 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Lbys_1902 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Lbys_3568 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Lbys_0317 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Lbys_1419 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Lbys_2693 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Lbys_0927 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Lbys_1015 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Lbys_0060 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Lbys_2866 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lbys_1014 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Lbys_3446 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Lbys_1282 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Lbys_1850 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Lbys_2591 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Lbys_3200 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Lbys_R0017 RNA component of RNaseP K01978 rnpB; M1 RNA
D Lbys_1945 ABC transporter related protein K06020 ettA; energy-dependent translational throttle protein EttA
D Lbys_2939 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Lbys_1941 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Lbys_1149 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Lbys_1142 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D Lbys_0894 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Lbys_3536 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D Lbys_0563 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D Lbys_0608 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Lbys_1208 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Lbys_2746 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D Lbys_0451 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Lbys_3574 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Lbys_1746 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Lbys_0691 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Lbys_1123 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Lbys_1262 iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Lbys_2895 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Lbys_1435 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Lbys_3202 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Lbys_2106 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Lbys_1669 Uncharacterized protein family UPF0079, ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Lbys_1163 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Lbys_2458 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Lbys_0940 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:lby03012]
D Lbys_3460 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1
D Lbys_1585 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Lbys_3528 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Lbys_3031 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Lbys_3306 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Lbys_2855 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Lbys_2376 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Lbys_2265 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Lbys_2547 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D Lbys_3090 ribosome recycling factor K02838 frr; ribosome recycling factor
D Lbys_3007 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Lbys_1120 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Lbys_1808 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1
D Lbys_1688 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D Lbys_2158 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2
D Lbys_3444 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:lby03110]
D Lbys_0653 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Lbys_1011 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Lbys_2697 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Lbys_3453 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Lbys_3181 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG
D Lbys_0731 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Lbys_0511 heat shock protein K04046 yegD; hypothetical chaperone protein
D Lbys_1303 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Lbys_1187 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Lbys_1186 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Lbys_2645 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Lbys_1302 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D Lbys_3416 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D Lbys_2644 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Lbys_3612 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Lbys_2662 hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin K13274 wprA; cell wall-associated protease [EC:3.4.21.-]
D Lbys_3027 peptidase S8 and S53 subtilisin kexin sedolisin K08651 E3.4.21.66; thermitase [EC:3.4.21.66]
D Lbys_1703 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_2160 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Lbys_2390 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Lbys_3082 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D Lbys_2674 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D Lbys_3435 peptidylprolyl isomerase FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D Lbys_2878 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Lbys_1182 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Lbys_1183 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Lbys_2952 thioredoxin K03671 TXN; thioredoxin
D Lbys_0969 thioredoxin K03671 TXN; thioredoxin
D Lbys_1129 thioredoxin K03671 TXN; thioredoxin
D Lbys_3593 putative disulfide-isomerase K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:lby04131]
D Lbys_2896 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Lbys_0926 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Lbys_2028 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Lbys_3181 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG
D Lbys_1845 major facilitator superfamily MFS_1 K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:lby03051]
D Lbys_3181 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:lby03032]
D Lbys_3537 ribonuclease H-related protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Lbys_2921 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Lbys_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Lbys_2104 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Lbys_1026 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Lbys_2071 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Lbys_3147 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0143 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_1156 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Lbys_2252 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Lbys_1021 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Lbys_3029 DNA polymerase III gamma/tau subunits-like protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Lbys_2788 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_3145 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0129 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Lbys_2287 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Lbys_0657 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Lbys_3053 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Lbys_0895 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Lbys_2074 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Lbys_1534 DNA topoisomerase (ATP-hydrolyzing) K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Lbys_0056 DNA topoisomerase type IIA subunit B region 2 domain protein K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Lbys_0076 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Lbys_0184 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:lby03036]
D Lbys_2367 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Lbys_2921 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Lbys_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Lbys_1162 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D Lbys_0864 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Lbys_1717 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Lbys_1590 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Lbys_2039 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Lbys_0614 Septum formation initiator K13052 divIC; cell division protein DivIC
D Lbys_0070 ABC transporter related protein K09812 ftsE; cell division transport system ATP-binding protein
D Lbys_2640 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Lbys_2823 cell division protein FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Lbys_2038 hypothetical protein K03589 ftsQ; cell division protein FtsQ
D Lbys_2035 cell cycle protein K03588 ftsW; cell division protein FtsW
D Lbys_0063 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Lbys_2040 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Lbys_2148 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Lbys_0859 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_0870 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1747 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2567 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1229 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2688 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_3122 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_3186 DivIVA domain K04074 divIVA; cell division initiation protein
D Lbys_2818 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Lbys_2819 Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Lbys_1221 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D Lbys_2072 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Lbys_0938 hypothetical protein K03496 parA; chromosome partitioning protein
D Lbys_2108 cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Lbys_0937 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lbys_2073 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lbys_1534 DNA topoisomerase (ATP-hydrolyzing) K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Lbys_0056 DNA topoisomerase type IIA subunit B region 2 domain protein K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Lbys_2591 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Lbys_1927 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Lbys_1309 integrase family protein K03733 xerC; integrase/recombinase XerC
D Lbys_1698 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D Lbys_2988 integrase family protein K04763 xerD; integrase/recombinase XerD
D Lbys_1255 integrase family protein K04763 xerD; integrase/recombinase XerD
D Lbys_0982 transposase K04763 xerD; integrase/recombinase XerD
D Lbys_3543 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Lbys_0133 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Lbys_2937 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:lby03400]
D Lbys_0569 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Lbys_2920 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Lbys_1405 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Lbys_2510 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lbys_2043 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lbys_0091 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lbys_0113 DNA-O6-methylguanine--protein-cysteine S-methyltransferase; Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Lbys_0667 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Lbys_2593 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Lbys_2498 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Lbys_3053 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Lbys_0657 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Lbys_2733 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Lbys_1527 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Lbys_1656 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Lbys_0072 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Lbys_1677 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Lbys_2620 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Lbys_2621 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Lbys_1803 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Lbys_2604 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Lbys_1756 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Lbys_3039 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Lbys_1890 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Lbys_1156 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Lbys_2252 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Lbys_1021 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Lbys_3029 DNA polymerase III gamma/tau subunits-like protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Lbys_2788 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_3145 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0129 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Lbys_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Lbys_3147 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0143 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0094 recA protein K03553 recA; recombination protein RecA
D Lbys_0611 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Lbys_2859 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Lbys_0254 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Lbys_2707 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Lbys_1510 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Lbys_2060 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Lbys_2777 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Lbys_2025 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Lbys_1264 recombination protein RecR K06187 recR; recombination protein RecR
D Lbys_1436 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Lbys_3326 protein of unknown function DUF853 NPT hydrolase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Lbys_0895 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Lbys_2074 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Lbys_0076 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Lbys_2921 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Lbys_0471 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Lbys_1113 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Lbys_0582 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Lbys_0580 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Lbys_2069 regulatory protein RecX K03565 recX; regulatory protein
D Lbys_1144 PHP domain protein K02347 polX; DNA polymerase (family X)
D Lbys_0723 ATP dependent helicase, Lhr family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Lbys_0044 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D Lbys_2209 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2076 ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2162 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lbys_2075 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Lbys_2281 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Lbys_2673 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:lby03029]
D Lbys_1585 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Lbys_3528 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Lbys_2855 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Lbys_2376 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Lbys_2265 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Lbys_2842 GTP-binding protein Era K03595 era; GTPase
D Lbys_3568 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Lbys_0592 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Lbys_3169 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Lbys_0759 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Lbys_1710 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Lbys_1579 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Lbys_1720 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Lbys_2811 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Lbys_3147 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_0143 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Lbys_3171 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D Lbys_0564 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D Lbys_0731 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Lbys_1186 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Lbys_1303 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Lbys_1302 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D Lbys_3416 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D Lbys_1187 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Lbys_2866 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lbys_0881 nitrogen-fixing NifU domain protein K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
D Lbys_3543 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Lbys_2193 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Lbys_2192 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Lbys_0559 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Lbys_1438 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D Lbys_2197 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D Lbys_3181 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:lby02000]
D Lbys_2669 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Lbys_0599 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Lbys_0619 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Lbys_1377 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Lbys_2935 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Lbys_3235 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein
D Lbys_2154 ABC transporter related protein K05776 modF; molybdate transport system ATP-binding protein
D Lbys_2149 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Lbys_3075 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Lbys_3076 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Lbys_3054 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein
D Lbys_3055 transport system permease protein K25133 hmuU; heme transport system permease protein
D Lbys_3056 ABC transporter related protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D Lbys_0053 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D Lbys_0052 ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Lbys_0942 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D Lbys_2892 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D Lbys_2497 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Lbys_3552 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Lbys_0795 ABC transporter related protein K20459 nukF; lantibiotic transport system ATP-binding protein
D Lbys_0794 hypothetical protein K20461 nukG; lantibiotic transport system permease protein
D Lbys_0449 protein involved in gliding motility GldF K25151 gldF; gliding motility-associated transport system permease protein
D Lbys_2846 protein involved in gliding motility GldA K25152 gldA; gliding motility-associated transport system ATP-binding protein
D Lbys_2296 gliding-associated putative ABC transporter substrate-binding component GldG K25153 gldG; gliding motility-associatede transport system auxiliary component
D Lbys_0468 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D Lbys_1427 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D Lbys_1212 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D Lbys_1106 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Lbys_1426 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Lbys_0750 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D Lbys_0751 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B
D Lbys_1660 ABC transporter related protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Lbys_0063 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Lbys_0070 ABC transporter related protein K09812 ftsE; cell division transport system ATP-binding protein
D Lbys_3255 ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Lbys_3462 ABC transporter, permease protein, putative K01992 ABC-2.P; ABC-2 type transport system permease protein
D Lbys_2715 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Lbys_1502 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Lbys_2503 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Lbys_3256 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Lbys_3463 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Lbys_3566 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Lbys_1503 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Lbys_3061 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Lbys_3321 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Lbys_2362 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Lbys_2363 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Lbys_1337 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Lbys_0497 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Lbys_2493 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Lbys_3320 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Lbys_2364 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Lbys_0498 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Lbys_0842 Iron-regulated ABC transporter ATPase subunit SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Lbys_2571 Na+-dependent transporter-like protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D Lbys_2884 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Lbys_1923 L-fucose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D Lbys_2543 major facilitator superfamily MFS_1 K02429 fucP; MFS transporter, FHS family, L-fucose permease
D Lbys_1297 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D Lbys_1615 major facilitator superfamily MFS_1 K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D Lbys_0360 major facilitator superfamily MFS_1 K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D Lbys_2292 major facilitator superfamily MFS_1 K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D Lbys_3236 major facilitator superfamily MFS_1 K08156 araJ; MFS transporter, DHA1 family, arabinose polymer utilization protein
D Lbys_1740 major facilitator superfamily MFS_1 K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D Lbys_1845 major facilitator superfamily MFS_1 K06902 UMF1; MFS transporter, UMF1 family
D Lbys_2962 major intrinsic protein K02440 glpF; glycerol uptake facilitator
D Lbys_1140 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Lbys_3005 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Lbys_1600 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Lbys_1159 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Lbys_2034 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D Lbys_1246 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Lbys_2576 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Lbys_1420 magnesium transporter K06213 mgtE; magnesium transporter
D Lbys_1128 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Lbys_3211 outer membrane transport energization protein ExbB K03561 exbB; biopolymer transport protein ExbB
D Lbys_3260 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Lbys_3261 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Lbys_1324 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D Lbys_1524 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D Lbys_0914 hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein
D Lbys_0670 hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein
D Lbys_0867 Heavy metal transport/detoxification protein K08364 merP; periplasmic mercuric ion binding protein
D Lbys_0043 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Lbys_3512 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP
D Lbys_1637 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Lbys_2745 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Lbys_1287 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Lbys_2206 Thrombospondin type 3 repeat-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Lbys_3093 TonB-dependent receptor plug K19611 fepA; ferric enterobactin receptor
D Lbys_2870 TonB-dependent receptor plug K19611 fepA; ferric enterobactin receptor
D Lbys_1540 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D Lbys_1763 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D Lbys_2311 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2358 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_1986 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2050 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_0270 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_0108 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2947 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_0835 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_0354 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_0374 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_1368 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2114 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2248 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2321 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2441 TonB-dependent receptor plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_3424 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D Lbys_2799 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D Lbys_1558 TonB-dependent receptor plug K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D Lbys_0866 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D Lbys_0550 TonB-dependent receptor plug K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D Lbys_3045 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_3109 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_3243 TonB-dependent receptor plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_2303 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_2093 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_1789 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_2803 TonB-dependent receptor plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Lbys_2085 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1749 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_2565 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0868 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0861 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_3171 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D Lbys_0564 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D Lbys_0698 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD
D Lbys_2283 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D Lbys_0646 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D Lbys_2083 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein
D Lbys_3600 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein
D Lbys_3603 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein
D Lbys_1228 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Lbys_0299 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Lbys_0373 sugar transport family protein K05340 glcU; glucose uptake protein
D Lbys_2343 RhaT l-rhamnose-proton symport 2 K02856 rhaT; L-rhamnose-H+ transport protein
D Lbys_3250 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Lbys_3305 gluconate transporter K06155 gntT; Gnt-I system high-affinity gluconate transporter
D Lbys_1841 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D Lbys_2136 sodium/proton antiporter, NhaA family K03313 nhaA; Na+:H+ antiporter, NhaA family
D Lbys_0915 sodium/proton antiporter, CPA1 family K24163 nhaK; monovalent cation/hydrogen antiporter
D Lbys_1446 sodium/proton antiporter, CPA1 family K03316 nhaP; Na+:H+ antiporter
D Lbys_1407 sodium/proton antiporter, CPA1 family K03316 nhaP; Na+:H+ antiporter
D Lbys_2967 sodium/hydrogen exchanger K26731 CHX; K+:H+ antiporter
D Lbys_1462 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein
D Lbys_1461 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Lbys_2290 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D Lbys_2483 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Lbys_2974 multisubunit sodium/proton antiporter, MrpA subunit K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D Lbys_2975 multisubunit sodium/proton antiporter, MrpB subunit K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D Lbys_2976 multisubunit sodium/proton antiporter, MrpC subunit K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D Lbys_2977 multisubunit sodium/proton antiporter, MrpD subunit K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D Lbys_2978 multisubunit sodium/proton antiporter, MrpE subunit K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D Lbys_2979 multisubunit sodium/proton antiporter, MrpF subunit K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D Lbys_2980 multisubunit sodium/proton antiporter, MrpG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D Lbys_0728 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins
D Lbys_2133 potassium transporter K03549 kup; KUP system potassium uptake protein
D Lbys_1007 conserved hypothetical protein K09125 yhhQ; queuosine precursor transporter
D Lbys_0634 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein
D Lbys_2035 cell cycle protein K03588 ftsW; cell division protein FtsW
D Lbys_3598 hypothetical protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D Lbys_3214 outer membrane transport energization protein TonB K03832 tonB; periplasmic protein TonB
D Lbys_1529 OmpA/MotB domain protein K03640 pal; peptidoglycan-associated lipoprotein
D Lbys_1603 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Lbys_2084 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D Lbys_3599 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D Lbys_3602 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D Lbys_0859 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_0870 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1747 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2567 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1229 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2688 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_3122 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1239 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2009 RagB/SusD domain-containing protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2115 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0107 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_3012 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2780 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_1869 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2442 tetratricopeptide domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_1987 hypothetical protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2247 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2263 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2529 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0358 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2948 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0834 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0375 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2357 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0005 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_1627 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0271 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_1367 hypothetical protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0353 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2127 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2515 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2322 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2627 conserved hypothetical protein, secreted K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2312 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2310 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2051 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_3425 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_2270 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0487 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_0007 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_3420 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D Lbys_3346 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D Lbys_1259 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Lbys_1258 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Lbys_3417 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D Lbys_1173 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:lby02044]
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_0659 hypothetical protein K02237 comEA; competence protein ComEA
D Lbys_1023 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Lbys_2986 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC
D Lbys_3422 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Lbys_2814 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D Lbys_2293 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Lbys_1145 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Lbys_1810 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Lbys_2016 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Lbys_2382 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Lbys_0755 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Lbys_0559 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Lbys_1578 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Lbys_1736 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:lby02042]
D Lbys_0043 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Lbys_2091 Hly-III family protein K11068 hlyIII; hemolysin III
D Lbys_2889 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:lby02022]
D Lbys_1733 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2729 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_3178 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2053 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2625 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2833 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Lbys_2135 integral membrane sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Lbys_2134 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Lbys_2834 two component transcriptional regulator, winged helix family K07672 trcR; two-component system, OmpR family, response regulator TrcR
D Lbys_3404 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Lbys_0153 response regulator receiver protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Lbys_2338 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Lbys_1556 integral membrane sensor signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Lbys_1715 histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D Lbys_1860 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_2959 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_3106 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_3125 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Lbys_1861 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_1998 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_0524 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_2958 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_3107 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_0294 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_0963 response regulator receiver protein K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_3124 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_2538 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_0831 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Lbys_0500 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D Lbys_1796 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Lbys_2617 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:lby02035]
D Lbys_1128 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:lby04812]
D Lbys_2818 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Lbys_2040 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Lbys_2039 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Lbys_2072 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Lbys_0938 hypothetical protein K03496 parA; chromosome partitioning protein
D Lbys_2108 cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Lbys_0937 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Lbys_2073 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:lby04147]
D Lbys_3181 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG
D Lbys_0613 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Lbys_0926 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Lbys_3021 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Lbys_2028 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Lbys_3493 peptidase M19 renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Lbys_2765 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Lbys_1303 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Lbys_0731 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Lbys_3384 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Lbys_2150 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_1450 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_0480 Dipeptidyl-peptidase IV K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_1448 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Lbys_2873 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Lbys_2376 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Lbys_2693 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Lbys_0674 Arylesterase K01045 PON; arylesterase / paraoxonase [EC:3.1.1.2 3.1.8.1]
D Lbys_2571 Na+-dependent transporter-like protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D Lbys_2080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_1762 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Lbys_3592 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Lbys_2767 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Lbys_3218 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Lbys_2918 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Lbys_2279 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Lbys_3503 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D Lbys_0665 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Lbys_2488 coagulation factor 5/8 type domain protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_2883 glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_1665 glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_2585 glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Lbys_2575 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Lbys_3517 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Lbys_2291 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Lbys_0888 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1143 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Lbys_1956 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Lbys_3501 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Lbys_2088 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Lbys_0229 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_0364 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_1245 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Lbys_2838 Phosphoribosylaminoimidazolecarboxamideformyltra nsferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Lbys_3490 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_2718 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Lbys_0439 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Lbys_2795 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Lbys_2063 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Lbys_2113 Lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:lby02048]
D Lbys_0122 Type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Lbys_1354 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Lbys_1356 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Lbys_0118 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Lbys_0119 Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Lbys_1358 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Lbys_0432 putative type IIS restriction/modification enzyme K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Lbys_0413 N-6 DNA methylase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Lbys_1858 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D Lbys_1043 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D Lbys_1859 5-methylcytosine restriction system component-like protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D Lbys_1210 PspC domain protein K03973 pspC; phage shock protein C
D Lbys_3157 PspC domain protein K03973 pspC; phage shock protein C
D Lbys_3160 PspC domain protein K03973 pspC; phage shock protein C
D Lbys_2040 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Lbys_2818 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Lbys_1534 DNA topoisomerase (ATP-hydrolyzing) K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Lbys_0056 DNA topoisomerase type IIA subunit B region 2 domain protein K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Lbys_0479 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Lbys_2866 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Lbys_1641 glycoside hydrolase family 28 K19172 dndE; DNA sulfur modification protein DndE
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:lby04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:lby04090]
D Lbys_2150 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_1450 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Lbys_0480 Dipeptidyl-peptidase IV K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:lby01504]
D Lbys_2292 major facilitator superfamily MFS_1 K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D Lbys_1740 major facilitator superfamily MFS_1 K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D Lbys_0916 transferase hexapeptide repeat containing protein K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D Lbys_1739 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein
D Lbys_2152 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Lbys_1195 TonB family protein K02172 blaR1; bla regulator protein blaR1
D Lbys_1903 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_1196 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_2151 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Lbys_3545 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Lbys_3505 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Lbys_1708 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Lbys_0859 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_0870 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1747 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2567 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1229 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_2688 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_3122 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Lbys_1228 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Lbys_1749 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_2565 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0868 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_0861 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Lbys_2380 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1101 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_1227 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_2689 outer membrane efflux protein K12340 tolC; outer membrane protein
D Lbys_3123 outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:lby00537]
D Lbys_2088 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Lbys_2792 Alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D Lbys_3493 peptidase M19 renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Lbys_2765 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:lby03100]
D Lbys_R0039 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Lbys_R0019 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Lbys_R0023 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0050 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Lbys_R0049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Lbys_R0025 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Lbys_R0036 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Lbys_R0018 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Lbys_R0051 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Lbys_R0009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Lbys_R0053 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Lbys_R0032 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Lbys_R0034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Lbys_R0054 tRNA-His K14226 tRNA-His; tRNA His
D Lbys_R0028 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Lbys_R0044 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Lbys_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0042 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Lbys_R0006 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Lbys_R0013 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Lbys_R0012 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Lbys_R0015 tRNA-Met K14230 tRNA-Met; tRNA Met
D Lbys_R0007 tRNA-Met K14230 tRNA-Met; tRNA Met
D Lbys_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D Lbys_R0041 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Lbys_R0003 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Lbys_R0005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Lbys_R0024 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Lbys_R0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Lbys_R0008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Lbys_R0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Lbys_R0021 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Lbys_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Lbys_R0031 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Lbys_R0030 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Lbys_R0033 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Lbys_R0047 tRNA-Val K14237 tRNA-Val; tRNA Val
D Lbys_R0048 tRNA-Val K14237 tRNA-Val; tRNA Val
D Lbys_R0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0043 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Lbys_R0045 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0027 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Lbys_R0026 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Lbys_R0001 RNA component of signal recognition particle K01983 ffs; SRP RNA
D Lbys_R0017 RNA component of RNaseP K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Lbys_3530 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D Lbys_3311 glucose-methanol-choline oxidoreductase K26059 gtd1; glucoside 3-dehydrogenase (cytochrome c) catalytic subunit [EC:1.1.2.11]
D Lbys_0073 glucose/sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D Lbys_1539 carboxynorspermidine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D Lbys_2138 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Lbys_2762 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K26960 bdr; bacillithiol disulfide reductase [EC:1.8.1.-]
D Lbys_2692 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Lbys_0841 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D Lbys_1194 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Lbys_3319 1-Cys peroxiredoxin K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Lbys_2887 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]
D Lbys_3588 peroxiredoxin, OsmC subfamily K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Lbys_1417 peroxiredoxin, OsmC subfamily K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Lbys_0830 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Lbys_0947 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Lbys_0780 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Lbys_2171 Ferritin Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2]
D Lbys_2482 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Lbys_2153 ornithine carbamoyltransferase K13043 argF; N-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11]
D Lbys_3369 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D Lbys_0720 GCN5-related N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D Lbys_0727 GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D Lbys_1118 leucyl/phenylalanyl-tRNA/protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Lbys_1323 Arginine-tRNA-protein transferase domain protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D Lbys_2037 Arginine-tRNA-protein transferase domain protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D Lbys_3429 glycosidase related protein K16212 mgp; 4-O-beta-D-mannosyl-D-glucose phosphorylase [EC:2.4.1.281]
D Lbys_0598 glycosyl transferase group 1 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D Lbys_1953 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Lbys_3096 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Lbys_2563 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Lbys_1880 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_1977 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_1978 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2017 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_1800 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2564 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2615 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2606 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2676 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2807 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2808 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_0020 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_0021 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_0074 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_0086 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_3114 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_1001 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_1382 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_1141 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2143 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Lbys_2334 protein of unknown function DUF303 acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D Lbys_2906 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Lbys_0601 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Lbys_1501 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Lbys_2597 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Lbys_2793 putative phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Lbys_0460 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Lbys_1164 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Lbys_2496 nuclease (SNase domain-containing protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D Lbys_2802 alpha/beta hydrolase fold protein K01175 ybfF; esterase [EC:3.1.-.-]
D Lbys_2331 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Lbys_2128 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Lbys_1832 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Lbys_2307 alpha amylase catalytic region K21575 susA; neopullulanase [EC:3.2.1.135]
D Lbys_2328 Alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139]
D Lbys_1622 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Lbys_2353 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Lbys_2355 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Lbys_0010 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Lbys_2946 glycoside hydrolase family 31 K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D Lbys_1867 glycosyl hydrolase family 88 K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D Lbys_0040 glycosyl hydrolase family 88 K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D Lbys_0282 beta-lactamase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D Lbys_1863 beta-lactamase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D Lbys_1835 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Lbys_1896 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D Lbys_0804 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Lbys_2926 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Lbys_2319 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Lbys_1493 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Lbys_0251 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Lbys_0506 sulfatase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Lbys_0048 LmbE family protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]
D Lbys_3136 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Lbys_3473 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Lbys_3006 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Lbys_1184 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Lbys_1604 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Lbys_3230 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-]
D Lbys_3430 N-acylglucosamine 2-epimerase K16213 cbe; cellobiose epimerase [EC:5.1.3.11]
D Lbys_2354 L-rhamnose 1-epimerase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D Lbys_1924 protein of unknown function DUF718 K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D Lbys_0627 Mur ligase middle domain protein K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D Lbys_0545 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D Lbys_3565 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D Lbys_2535 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Lbys_3596 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D Lbys_2704 protein of unknown function UCP012535 K22136 bshC; bacillithiol synthase
D Lbys_3312 twin-arginine translocation pathway signal K26060 gtd2; glucoside 3-dehydrogenase (cytochrome c) hitch-hiker subunit
C 99982 Energy metabolism
D Lbys_3549 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K05337 fer; ferredoxin
D Lbys_0438 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Lbys_3414 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein
D Lbys_2849 alanine racemase domain protein K06997 yggS; PLP dependent protein
D Lbys_1083 alanine racemase domain protein K06997 yggS; PLP dependent protein
D Lbys_0711 alanine racemase domain protein K06997 yggS; PLP dependent protein
D Lbys_2841 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D Lbys_1174 integral membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
D Lbys_0287 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D Lbys_3009 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D Lbys_2117 metallophosphoesterase K22390 ACP7; acid phosphatase type 7
D Lbys_2858 DoxX family protein K15977 K15977; putative oxidoreductase
D Lbys_0595 DoxX family protein K15977 K15977; putative oxidoreductase
D Lbys_2146 DoxX family protein K15977 K15977; putative oxidoreductase
D Lbys_0848 protein of unknown function DUF1094 K26958 brxA_B; bacilliredoxin
D Lbys_3189 hypothetical protein K26959 brxC; monothiol bacilliredoxin
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Lbys_1252 Tex-like protein K06959 tex; protein Tex
C 99974 Translation
D Lbys_2155 RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein
D Lbys_0310 RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D Lbys_1265 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Lbys_2695 trigger factor K03545 tig; trigger factor
D Lbys_2545 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Lbys_2210 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D Lbys_3340 20S proteasome A and B subunits K07395 K07395; putative proteasome-type protease
D Lbys_0872 OsmC family protein K07397 yhfA; putative redox protein
D Lbys_1699 OsmC family protein K07397 yhfA; putative redox protein
C 99976 Replication and repair
D Lbys_1589 Methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D Lbys_1233 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC
D Lbys_3078 Uncharacterized protein family UPF0102 K07460 yraN; putative endonuclease
D Lbys_0705 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease
D Lbys_1655 DNA protecting protein DprA K04096 smf; DNA processing protein
D Lbys_3531 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D Lbys_2587 3'-5' exonuclease, PolB K07501 K07501; 3'-5' exonuclease
D Lbys_0530 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_1963 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_3132 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_0266 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_0989 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_1064 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_0741 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_2227 transposase IS3/IS911 family protein K07483 K07483; transposase
D Lbys_1979 IS66 Orf2 family protein K07484 K07484; transposase
D Lbys_1036 IS66 Orf2 family protein K07484 K07484; transposase
D Lbys_0791 IS66 Orf2 family protein K07484 K07484; transposase
D Lbys_1384 IS66 Orf2 family protein K07484 K07484; transposase
D Lbys_2230 transposase K07484 K07484; transposase
D Lbys_2231 IS66 Orf2 family protein K07484 K07484; transposase
D Lbys_2238 IS66 Orf2 family protein K07484 K07484; transposase
D Lbys_0994 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Lbys_0121 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D Lbys_0434 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D Lbys_0329 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_1063 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_3294 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_0534 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_3295 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_0776 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_2228 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_1852 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_2401 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_2406 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_2423 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_2536 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_3133 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_2727 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_0267 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_1097 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_1098 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_0419 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_0420 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_0529 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_0535 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_0740 Integrase catalytic region K07497 K07497; putative transposase
D Lbys_2223 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Lbys_2224 Integrase catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Lbys_0972 Rhodanese domain protein K03972 pspE; phage shock protein E
D Lbys_0026 Uncharacterized protein family UPF0133 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Lbys_2332 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D Lbys_3437 amino acid/polyamine/organocation transporter, APC superfamily K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Lbys_3014 amino acid/polyamine/organocation transporter, APC superfamily K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Lbys_2655 amino acid/polyamine/organocation transporter, APC superfamily K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Lbys_2839 amino acid/polyamine/organocation transporter, APC superfamily K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Lbys_1748 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Lbys_0860 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Lbys_0869 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Lbys_2566 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Lbys_0276 citrate/H+ symporter, CitMHS family K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D Lbys_3461 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D Lbys_2710 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D Lbys_1535 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Lbys_2506 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family
D Lbys_0016 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family
D Lbys_2944 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family
D Lbys_1888 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family
D Lbys_3428 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Lbys_3242 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Lbys_3373 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D Lbys_2874 Na+ dependent nucleoside transporter domain protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D Lbys_0339 iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D Lbys_2912 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D Lbys_0554 Resolvase domain K06400 spoIVCA; site-specific DNA recombinase
D Lbys_R0014 site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase
D Lbys_1338 Resolvase domain K06400 spoIVCA; site-specific DNA recombinase
D Lbys_2984 Peptidase M23 K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D Lbys_2768 GTP-binding protein TypA K06207 typA; GTP-binding protein
D Lbys_1025 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D Lbys_2495 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Lbys_3172 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Lbys_3173 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Lbys_3071 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Lbys_3385 glycoside hydrolase family 25 K07273 acm; lysozyme
D Lbys_2502 biotin/lipoyl attachment domain-containing protein K01993 ABC-2.TX; HlyD family secretion protein
D Lbys_0499 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Lbys_2366 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Lbys_2381 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Lbys_2309 hypothetical protein K21571 susE_F; starch-binding outer membrane protein SusE/F
C 99994 Others
D Lbys_2721 CutC family protein K06201 cutC; copper homeostasis protein
D Lbys_0568 ApaG domain protein K06195 apaG; ApaG protein
D Lbys_3057 Hemin-degrading family protein K07225 hmuS; putative hemin transport protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Lbys_3511 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D Lbys_1165 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein
D Lbys_3307 hypothetical protein K06886 glbN; hemoglobin
D Lbys_0336 globin family protein K06886 glbN; hemoglobin
D Lbys_2600 Patatin K07001 K07001; NTE family protein
D Lbys_3103 Patatin K07001 K07001; NTE family protein
D Lbys_0984 Haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D Lbys_3150 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K07025 K07025; putative hydrolase of the HAD superfamily
D Lbys_1743 Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Lbys_0843 Iron-regulated ABC transporter permease protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D Lbys_0600 ribonuclease BN K07058 K07058; membrane protein
D Lbys_0846 Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE
D Lbys_1305 LemA family protein K03744 lemA; LemA protein
D Lbys_3153 SNARE associated Golgi protein-like protein K03975 dedA; membrane-associated protein
D Lbys_1932 SNARE associated Golgi protein-like protein K03975 dedA; membrane-associated protein
D Lbys_2392 membrane protein of unknown function K08972 K08972; putative membrane protein
D Lbys_2198 protein of unknown function DUF420 K08976 K08976; putative membrane protein
D Lbys_1388 hypothetical protein K09858 K09858; SEC-C motif domain protein
D Lbys_2347 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D Lbys_2560 Ankyrin K06867 K06867; uncharacterized protein
D Lbys_1307 protein of unknown function DUF477 K06872 K06872; uncharacterized protein
D Lbys_1664 metal dependent phosphohydrolase K06885 K06885; uncharacterized protein
D Lbys_0877 protein of unknown function DUF255 K06888 K06888; uncharacterized protein
D Lbys_1836 alpha/beta hydrolase fold protein K06889 K06889; uncharacterized protein
D Lbys_0125 protein of unknown function DUF1486 K06893 K06893; uncharacterized protein
D Lbys_0403 protein of unknown function DUF1486 K06893 K06893; uncharacterized protein
D Lbys_1039 hypothetical protein K06893 K06893; uncharacterized protein
D Lbys_0724 metallophosphoesterase K06953 K06953; uncharacterized protein
D Lbys_0458 peptidase membrane zinc metallopeptidase K06973 K06973; uncharacterized protein
D Lbys_1223 GCN5-related N-acetyltransferase K06975 K06975; uncharacterized protein
D Lbys_0781 hypothetical protein K06975 K06975; uncharacterized protein
D Lbys_1447 hydrolase CocE/NonD family protein K06978 K06978; uncharacterized protein
D Lbys_0838 lactoylglutathione lyase-like protein K06996 K06996; uncharacterized protein
D Lbys_1479 phospholipid/glycerol acyltransferase K07003 K07003; uncharacterized protein
D Lbys_2137 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein
D Lbys_2766 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein
D Lbys_1034 Glyoxalase/bleomycin resistance protein/dioxygenase K07032 K07032; uncharacterized protein
D Lbys_0398 TatD-related deoxyribonuclease K07051 K07051; uncharacterized protein
D Lbys_0508 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein
D Lbys_1788 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Lbys_1251 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Lbys_0975 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Lbys_0238 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Lbys_0644 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Lbys_2886 metallophosphoesterase K07098 K07098; uncharacterized protein
D Lbys_0104 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D Lbys_0105 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D Lbys_0966 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D Lbys_0968 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D Lbys_0110 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein
D Lbys_0782 hypothetical protein K07133 K07133; uncharacterized protein
D Lbys_0701 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K07137 K07137; uncharacterized protein
D Lbys_3492 protein of unknown function DUF418 K07148 K07148; uncharacterized protein
D Lbys_2348 protein of unknown function DUF418 K07148 K07148; uncharacterized protein
D Lbys_1594 protein of unknown function DUF164 K07164 K07164; uncharacterized protein
D Lbys_2081 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Lbys_0065 protein of unknown function DUF151 K08999 K08999; uncharacterized protein
D Lbys_3510 hypothetical protein K09117 K09117; uncharacterized protein
D Lbys_3112 protein of unknown function DUF1684 K09164 K09164; uncharacterized protein
D Lbys_1410 protein of unknown function DUF1684 K09164 K09164; uncharacterized protein
D Lbys_2806 Uncharacterized conserved protein UCP028846 K09704 K09704; uncharacterized protein
D Lbys_3442 YCII-related protein K09780 K09780; uncharacterized protein
D Lbys_2755 hypothetical protein K09792 K09792; uncharacterized protein
D Lbys_1596 protein of unknown function DUF456 K09793 K09793; uncharacterized protein
D Lbys_0666 protein of unknown function DUF541 K09797 K09797; uncharacterized protein
D Lbys_1602 protein of unknown function DUF541 K09807 K09807; uncharacterized protein
D Lbys_3318 hypothetical protein K00243 K00243; uncharacterized protein
D Lbys_0301 protein of unknown function DUF486 K09922 K09922; uncharacterized protein
D Lbys_2159 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein
D Lbys_0669 hypothetical protein K09954 K09954; uncharacterized protein
D Lbys_2513 protein of unknown function DUF1680 K09955 K09955; uncharacterized protein
D Lbys_3265 protein of unknown function DUF1680 K09955 K09955; uncharacterized protein
D Lbys_1151 cytochrome c class I K09992 K09992; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 19, 2024