+D GENES KO
#
KEGG Orthology (KO) - Legionella clemsonensis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:lcd00010]
D clem_07310 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D clem_09500 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D clem_10360 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_01425 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D clem_13805 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D clem_13800 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D clem_11975 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D clem_02800 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D clem_13795 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D clem_09150 ppsA_2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D clem_05685 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D clem_05690 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_04650 korA; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D clem_04655 korB; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D clem_06095 adhT; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D clem_02160 adhC2; NADP-dependent alcohol dehydrogenase C 2 K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:lcd00020]
D clem_05750 gltA_2; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D clem_07585 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D clem_09085 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D clem_01705 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D clem_01710 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_04650 korA; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D clem_04655 korB; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D clem_01720 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D clem_01715 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D clem_01695 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D clem_01700 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D clem_01685 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D clem_01690 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D clem_00340 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D clem_01600 cfiB; 2-oxoglutarate carboxylase small subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D clem_12125 cfiA; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D clem_05685 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D clem_05690 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:lcd00030]
D clem_09500 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D clem_07325 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D clem_07320 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D clem_09650 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D clem_13810 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D clem_00680 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D clem_05855 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D clem_02175 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_01765 prs_1; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D clem_08490 prs_3; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D clem_05325 prs_2; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D clem_07315 edd; Phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D clem_07305 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D clem_04605 kdgA; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_10360 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:lcd00040]
D clem_01030 ywqF_1; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_04480 ywqF_2; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_00975 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_04485 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_09650 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:lcd00051]
D clem_09540 algA; Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_10360 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_01425 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:lcd00052]
D clem_00105 arnA; Bifunctional polymyxin resistance protein ArnA K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D clem_00975 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_04485 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_07310 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D clem_10360 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism [PATH:lcd00053]
D clem_01030 ywqF_1; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_04480 ywqF_2; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_04965 rffG; dTDP-glucose 4,6-dehydratase 2 K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:lcd00500]
D clem_00975 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_04485 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_02275 celE; Endoglucanase E-5 precursor K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D clem_07295 Glycosyl hydrolases family 15 K01178 SGA1; glucoamylase [EC:3.2.1.3]
D clem_07255 treA; Periplasmic trehalase precursor K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_07310 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D clem_09500 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lcd00520]
D clem_12690 chiA; putative bifunctional chitinase/lysozyme precursor K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D clem_14780 ybbD_2; putative lipoprotein YbbD precursor K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D clem_04945 ybbD_1; putative lipoprotein YbbD precursor K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D clem_00970 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D clem_01415 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D clem_14235 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D clem_06355 anmK; Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D clem_13595 Phosphotransferase enzyme family protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D clem_13600 rmlA; Glucose-1-phosphate thymidylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D clem_04835 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D clem_01900 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D clem_05435 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D clem_05795 wbpE; UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D clem_00110 wbpA; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D clem_09450 UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolyzing) K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D clem_09455 neuB_2; N,N'-diacetyllegionaminic acid synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D clem_09295 neuA_1; CMP-N,N'-diacetyllegionaminic acid synthase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D clem_09325 neuA_2; CMP-N,N'-diacetyllegionaminic acid synthase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D clem_09390 neuA_3; N-acylneuraminate cytidylyltransferase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D clem_09460 neuA_4; CMP-N,N'-diacetyllegionaminic acid synthase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D clem_07310 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_00975 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_04485 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_01030 ywqF_1; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_04480 ywqF_2; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_00105 arnA; Bifunctional polymyxin resistance protein ArnA K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D clem_04965 rffG; dTDP-glucose 4,6-dehydratase 2 K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D clem_09500 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D clem_09540 algA; Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D clem_00365 ascD; CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D clem_00985 rfbE; CDP-paratose 2-epimerase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
C 00620 Pyruvate metabolism [PATH:lcd00620]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D clem_04650 korA; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D clem_04655 korB; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D clem_05685 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D clem_05690 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_06095 adhT; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D clem_02160 adhC2; NADP-dependent alcohol dehydrogenase C 2 K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D clem_06505 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D clem_06510 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D clem_13795 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D clem_09225 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D clem_12140 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D clem_12145 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D clem_06025 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D clem_06110 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D clem_05535 gloB; Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D clem_10030 maeA_2; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D clem_05465 maeA_1; putative NAD-dependent malic enzyme 2 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D clem_02240 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D clem_01600 cfiB; 2-oxoglutarate carboxylase small subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D clem_12125 cfiA; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D clem_00340 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D clem_09150 ppsA_2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lcd00630]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D clem_05750 gltA_2; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D clem_07585 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_08315 phbB_3; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D clem_01815 phbB_1; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D clem_01820 phbB_2; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D clem_01355 katE; Catalase HPII K03781 katE; catalase [EC:1.11.1.6]
D clem_11765 hprA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D clem_11260 Phosphorylated carbohydrates phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D clem_10180 puuA; Gamma-glutamylputrescine synthetase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_06150 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_03780 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D clem_14060 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D clem_14070 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D clem_14050 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_14055 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D clem_07305 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D clem_04605 kdgA; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:lcd00640]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D clem_06505 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D clem_06510 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D clem_07035 pdhA; Pyruvate dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D clem_07040 pdhB_2; Pyruvate dehydrogenase E1 component subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D clem_02070 pdhB_1; Pyruvate dehydrogenase E1 component subunit beta K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D clem_07045 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_09225 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D clem_12140 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D clem_12145 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D clem_06025 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_01715 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D clem_01720 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D clem_13755 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D clem_06555 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D clem_06560 prpD_2; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D clem_06550 prpB; Methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:lcd00650]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_06085 fadN; putative 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_08790 echA8_2; putative enoyl-CoA hydratase echA8 K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D clem_14470 phbC_3; Poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D clem_08320 phbC_2; Poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D clem_01840 phbC_1; Poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D clem_08315 phbB_3; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D clem_01815 phbB_1; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D clem_01820 phbB_2; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D clem_01695 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D clem_01700 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D clem_01685 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D clem_01690 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_07120 sad; Succinate semialdehyde dehydrogenase [NAD(P)+] Sad K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D clem_04650 korA; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D clem_04655 korB; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D clem_11010 yngG; Hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D clem_11030 acsA; Acetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D clem_10465 bdhA; D-beta-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D clem_10470 adc; putative acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4]
D clem_13030 alsS_2; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_02125 alsS_1; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:lcd00660]
D clem_13030 alsS_2; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_02125 alsS_1; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_01715 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D clem_01720 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:lcd00562]
D clem_04350 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D clem_13755 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D clem_01425 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:lcd00190]
D clem_01440 ndhC; NAD(P)H-quinone oxidoreductase subunit 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D clem_01445 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D clem_01450 nuoC1; NADH-quinone oxidoreductase subunit C 1 K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D clem_01455 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D clem_01460 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D clem_01465 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D clem_01470 nqo3; NADH-quinone oxidoreductase chain 3 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D clem_01475 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D clem_01480 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D clem_01485 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D clem_01490 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D clem_01495 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D clem_01500 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D clem_01505 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D clem_01695 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D clem_01700 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D clem_01685 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D clem_01690 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D clem_02565 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D clem_02570 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D clem_02575 petC; Cytochrome c1 precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D clem_03370 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D clem_14360 ctaE; Cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D clem_14370 ctaD_2; Cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D clem_03110 ctaD_1; Cytochrome c oxidase subunit 1 K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9]
D clem_14375 ctaC_2; Cytochrome c oxidase subunit 2 precursor K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D clem_03105 ctaC_1; Cytochrome c oxidase subunit 2 precursor K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D clem_14365 ctaG; Cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D clem_03365 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D clem_06530 appC; Cytochrome bd-II ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D clem_06535 cydB; Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D clem_08365 atpA_2; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D clem_00260 atpA_1; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D clem_08335 atpD_2; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D clem_00270 atpD_1; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D clem_08370 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D clem_00265 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D clem_00255 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D clem_08340 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D clem_00275 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D clem_08350 atpB_2; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D clem_00240 atpB_1; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D clem_08360 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D clem_00250 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D clem_08355 atpE_2; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D clem_00245 atpE_1; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D clem_01565 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D clem_13625 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:lcd00710]
D clem_13800 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D clem_13805 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_13810 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D clem_00680 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D clem_01425 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D clem_09650 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D clem_02240 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:lcd00720]
D clem_09150 ppsA_2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D clem_01600 cfiB; 2-oxoglutarate carboxylase small subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D clem_12125 cfiA; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D clem_00340 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D clem_01695 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D clem_01700 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D clem_01685 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D clem_01690 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D clem_01720 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D clem_01715 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_04650 korA; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D clem_04655 korB; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D clem_09085 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D clem_07585 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D clem_09225 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D clem_12140 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D clem_12145 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D clem_06025 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D clem_05555 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D clem_06510 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D clem_06505 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:lcd00680]
D clem_03780 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D clem_11765 hprA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D clem_02800 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_10360 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D clem_06505 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D clem_06510 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D clem_09150 ppsA_2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D clem_11975 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D clem_05765 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D clem_13645 rimK_3; Ribosomal protein S6 modification protein K14940 cofF; gamma-F420-2:alpha-L-glutamate ligase [EC:6.3.2.32]
C 00910 Nitrogen metabolism [PATH:lcd00910]
D clem_07115 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D clem_10180 puuA; Gamma-glutamylputrescine synthetase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_06150 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_09975 cynT_2; Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D clem_06585 icfA; Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D clem_10890 mtcA2; Carbonic anhydrase 2 K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D clem_02230 cynT_1; Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:lcd00920]
D clem_05330 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D clem_09270 blh; Beta-lactamase hydrolase-like protein K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18]
D clem_00670 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D clem_02990 metX; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:lcd00061]
D clem_09225 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D clem_12140 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D clem_12145 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D clem_06025 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D clem_06320 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D clem_13290 acpXL; Acyl carrier protein AcpXL K02078 acpP; acyl carrier protein
D clem_06310 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D clem_06305 fabH_2; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D clem_01850 fabH_1; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D clem_13275 fabF_2; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D clem_06325 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_13280 fabF_3; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_14115 fabF_4; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_06315 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D clem_11940 fabZ_1; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D clem_11320 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D clem_13305 fabL; Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL K10780 fabL; enoyl-[acyl-carrier protein] reductase III [EC:1.3.1.104]
D clem_07015 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_04705 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:lcd00071]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_06090 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_06085 fadN; putative 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D clem_07730 fadE_1; Acyl-coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D clem_13610 fadE_2; Acyl-coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D clem_02075 acdA_1; Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D clem_07015 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_04705 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_00120 alkB2; Alkane 1-monooxygenase 2 K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D clem_06095 adhT; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis [PATH:lcd00100]
D clem_14840 Ergosterol biosynthesis ERG4/ERG24 family protein K00213 DHCR7; 7-dehydrocholesterol reductase [EC:1.3.1.21]
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:lcd00561]
D clem_02160 adhC2; NADP-dependent alcohol dehydrogenase C 2 K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D clem_05740 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D clem_06300 plsX; Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D clem_12220 plsY; putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D clem_01790 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:lcd00564]
D clem_11215 gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D clem_05735 glpD; Aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D clem_12220 plsY; putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D clem_01790 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D clem_00335 cytoplasmic glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D clem_09695 ugpQ; Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D clem_11965 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D clem_07125 pcsA; Phosphatidylcholine synthase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24]
D clem_12080 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D clem_00315 psd; Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D clem_11255 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D clem_03800 pgpA; Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D clem_05280 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D clem_01375 pgsA2; Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase 2 K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:lcd00592]
D clem_06090 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:lcd01040]
D clem_01810 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D clem_10840 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D clem_05445 tesA; Esterase TesA precursor K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D clem_01050 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:lcd00230]
D clem_14525 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D clem_12210 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D clem_02175 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_01765 prs_1; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D clem_08490 prs_3; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D clem_05325 prs_2; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D clem_11555 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D clem_11560 purD; Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D clem_11565 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D clem_11535 purL; Phosphoribosylformylglycinamidine synthase 2 K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D clem_11545 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D clem_11540 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D clem_11570 purE_1; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D clem_11600 purE_2; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D clem_11550 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D clem_09160 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D clem_12155 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D clem_05475 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D clem_05860 xapA; Purine nucleoside phosphorylase 2 K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D clem_05645 yfiH; Laccase domain protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D clem_06620 hpt; Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D clem_07700 guaB_2; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D clem_00930 guaB_1; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D clem_06985 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D clem_12805 rdgB; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D clem_07695 guaA_1; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D clem_11460 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D clem_04180 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D clem_04175 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D clem_10255 dgt; Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D clem_11450 spoT; Bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D clem_06670 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D clem_12010 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D clem_02750 Adenine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D clem_11990 Aminodeoxyfutalosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D clem_05725 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D clem_00425 apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
C 00240 Pyrimidine metabolism [PATH:lcd00240]
D clem_10645 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D clem_11655 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D clem_03430 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D clem_00590 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D clem_10955 pyrD; Dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D clem_05070 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D clem_05800 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D clem_07660 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D clem_06985 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D clem_01975 yhdE; Maf-like protein YhdE K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D clem_11775 yceF; Maf-like protein YceF K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D clem_07950 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D clem_05775 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D clem_12970 udk_2; Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D clem_11315 udk_1; Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D clem_05475 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D clem_05755 udp; Uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D clem_09795 psuG; Pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D clem_05865 cdd; Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D clem_00635 dcd; Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D clem_04180 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D clem_04175 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D clem_06335 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D clem_12825 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D clem_08495 pdp; Pyrimidine-nucleoside phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D clem_14200 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D clem_06870 ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:lcd00250]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_09165 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D clem_14225 ansA; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D clem_01115 iaaA; Isoaspartyl peptidase precursor K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D clem_14010 asnB; Asparagine synthetase [glutamine-hydrolyzing] 1 K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D clem_04500 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D clem_12010 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D clem_09160 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D clem_03430 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_07120 sad; Succinate semialdehyde dehydrogenase [NAD(P)+] Sad K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D clem_07115 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D clem_07595 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D clem_10180 puuA; Gamma-glutamylputrescine synthetase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_06150 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_10645 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D clem_11655 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D clem_04755 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D clem_11545 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D clem_00970 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D clem_11555 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:lcd00260]
D clem_03990 ask; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D clem_03925 lysA; Diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D clem_11295 asd2; Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D clem_03780 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D clem_11765 hprA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D clem_11975 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D clem_05765 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D clem_06870 ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D clem_10870 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D clem_10865 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D clem_14060 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D clem_14070 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D clem_14050 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_14055 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D clem_12080 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D clem_13885 gbsA; Betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D clem_04510 Glycine/sarcosine/dimethylglycine N-methyltransferase K18897 sdmt; sarcosine/dimethylglycine N-methyltransferase [EC:2.1.1.157]
D clem_04985 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D clem_09210 tdcG; L-serine dehydratase TdcG K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D clem_07285 ilvA; L-threonine dehydratase biosynthetic IlvA K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D clem_05575 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D clem_05570 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:lcd00270]
D clem_00670 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D clem_04985 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D clem_11650 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D clem_07650 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D clem_05645 yfiH; Laccase domain protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D clem_11645 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D clem_03990 ask; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D clem_03925 lysA; Diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D clem_11295 asd2; Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D clem_02990 metX; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D clem_06680 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D clem_11150 Glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D clem_11145 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_12205 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D clem_09210 tdcG; L-serine dehydratase TdcG K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D clem_07285 ilvA; L-threonine dehydratase biosynthetic IlvA K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D clem_05765 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:lcd00280]
D clem_06680 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D clem_09705 ldh; Leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D clem_07035 pdhA; Pyruvate dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D clem_07040 pdhB_2; Pyruvate dehydrogenase E1 component subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D clem_02070 pdhB_1; Pyruvate dehydrogenase E1 component subunit beta K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D clem_07045 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_10980 acdA_3; Acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_06090 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D clem_13750 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D clem_13755 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_11005 accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D clem_10995 Methylmalonyl-CoA carboxyltransferase 12S subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D clem_11000 paaF; 2,3-dehydroadipyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D clem_11010 yngG; Hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D clem_11030 acsA; Acetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lcd00290]
D clem_07285 ilvA; L-threonine dehydratase biosynthetic IlvA K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D clem_13030 alsS_2; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_02125 alsS_1; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_06680 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D clem_09705 ldh; Leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
C 00300 Lysine biosynthesis [PATH:lcd00300]
D clem_03990 ask; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D clem_03925 lysA; Diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D clem_11295 asd2; Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D clem_10445 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D clem_13780 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D clem_04960 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D clem_00565 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D clem_04955 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D clem_13200 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D clem_04400 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D clem_01875 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:lcd00310]
D clem_06080 gabD; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D clem_01710 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_02075 acdA_1; Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_07120 sad; Succinate semialdehyde dehydrogenase [NAD(P)+] Sad K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D clem_06650 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D clem_03630 dadA; D-amino acid dehydrogenase small subunit K26064 amaD; D-lysine oxidase
C 00220 Arginine biosynthesis [PATH:lcd00220]
D clem_04755 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D clem_11545 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D clem_10180 puuA; Gamma-glutamylputrescine synthetase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_06150 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_10645 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D clem_11655 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D clem_07115 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_00565 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D clem_00955 argE; Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:lcd00330]
D clem_11020 speA; Biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D clem_11025 aguA; Agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D clem_11015 N-carbamoyl-D-amino acid hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D clem_07650 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D clem_07635 aruG; Arginine N-succinyltransferase subunit beta K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D clem_07645 astB; N-succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D clem_07640 astD; N-succinylglutamate 5-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D clem_11495 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D clem_07595 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D clem_11110 pip; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_06650 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:lcd00340]
D clem_07860 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D clem_07895 hisE; Phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D clem_07885 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D clem_07880 hisH; Imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D clem_09465 hisH1; Imidazole glycerol phosphate synthase subunit HisH 1 K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D clem_07890 hisF_1; Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D clem_09470 hisF_2; Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D clem_07875 hisB; Histidine biosynthesis bifunctional protein HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D clem_10075 hisC2; Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07870 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07865 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D clem_06250 hutH_1; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D clem_09665 hutH_2; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D clem_06245 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D clem_03695 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D clem_03680 hutG; Formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D clem_06395 egtD; Histidine-specific methyltransferase EgtD K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:lcd00350]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_10075 hisC2; Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07870 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_09715 lly; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D clem_05495 hmgA; Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D clem_09725 nagL; Maleylpyruvate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D clem_09720 Ureidoglycolate lyase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D clem_06095 adhT; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D clem_07120 sad; Succinate semialdehyde dehydrogenase [NAD(P)+] Sad K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:lcd00360]
D clem_10755 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_10075 hisC2; Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07870 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_09715 lly; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D clem_06650 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D clem_03885 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:lcd00380]
D clem_04995 kmo; Kynurenine 3-monooxygenase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9]
D clem_01710 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_02075 acdA_1; Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_01355 katE; Catalase HPII K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lcd00400]
D clem_11675 aroH; Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D clem_04555 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D clem_12135 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D clem_01335 aroE; Shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D clem_04550 aroK; Shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71]
D clem_05770 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D clem_11300 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D clem_04770 pabA; Aminodeoxychorismate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D clem_07780 trpE; Anthranilate synthase component 1 K13503 trpEG; anthranilate synthase [EC:4.1.3.27]
D clem_04765 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D clem_05565 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D clem_04760 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D clem_05575 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D clem_05570 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D clem_10395 pheA; P-protein K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_10075 hisC2; Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07870 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_10755 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:lcd00410]
D clem_13245 panD; Aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_01615 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_13755 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:lcd00430]
D clem_01785 ggt; Gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D clem_04500 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D clem_07115 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D clem_06510 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D clem_06505 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:lcd00440]
D clem_07265 Phytanoyl-CoA dioxygenase (PhyH) K21195 phnY; 2-aminoethylphosphonate dioxygenase [EC:1.14.11.46]
D clem_12590 Phytanoyl-CoA dioxygenase (PhyH) K21195 phnY; 2-aminoethylphosphonate dioxygenase [EC:1.14.11.46]
D clem_07260 HD domain protein K21196 phnZ; 2-amino-1-hydroxyethylphosphonate dioxygenase (glycine-forming) [EC:1.13.11.78]
C 00450 Selenocompound metabolism [PATH:lcd00450]
D clem_04985 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D clem_10605 sufS; Cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D clem_01120 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D clem_04215 Glucosaminate ammonia-lyase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D clem_14260 metG_1; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:lcd00460]
D clem_01785 ggt; Gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D clem_14225 ansA; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D clem_01115 iaaA; Isoaspartyl peptidase precursor K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D clem_03780 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:lcd00470]
D clem_09590 alr; Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D clem_06650 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D clem_01905 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D clem_04755 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D clem_11545 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D clem_11415 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D clem_01885 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D clem_13200 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D clem_03925 lysA; Diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
C 00480 Glutathione metabolism [PATH:lcd00480]
D clem_01785 ggt; Gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D clem_01290 apc3; Acetophenone carboxylase gamma subunit K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
D clem_00010 ybdK_1; Carboxylate-amine ligase YbdK K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D clem_09780 ybdK_2; Carboxylate-amine ligase YbdK K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D clem_11150 Glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D clem_11145 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D clem_10675 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D clem_10705 pepB; Peptidase B K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D clem_01315 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D clem_04575 gstA; Glutathione S-transferase GstA K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D clem_12895 gor; Glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D clem_09085 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D clem_07325 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D clem_09175 gpx1; Hydroperoxy fatty acid reductase gpx1 K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D clem_07650 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:lcd00540]
D clem_11935 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D clem_01925 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D clem_14120 lpxD_2; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D clem_11945 lpxD_1; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D clem_07005 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D clem_06195 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D clem_10940 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D clem_04795 kdsD; Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D clem_07945 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D clem_04790 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D clem_10405 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D clem_10810 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D clem_13270 htrB; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D clem_14745 pagP; Lipid A palmitoyltransferase PagP precursor K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D clem_00140 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D clem_11075 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D clem_09060 O-Antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lcd00541]
D clem_00975 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_04485 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D clem_00105 arnA; Bifunctional polymyxin resistance protein ArnA K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D clem_01030 ywqF_1; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_04480 ywqF_2; UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D clem_04965 rffG; dTDP-glucose 4,6-dehydratase 2 K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D clem_09525 rmlA2; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D clem_01025 UDP-glucose 4-epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09415 rfbB_1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09275 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D clem_09410 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D clem_09520 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D clem_00365 ascD; CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D clem_00985 rfbE; CDP-paratose 2-epimerase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D clem_09540 algA; Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D clem_14235 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D clem_05435 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D clem_00110 wbpA; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D clem_05795 wbpE; UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C 00550 Peptidoglycan biosynthesis [PATH:lcd00550]
D clem_04835 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D clem_01900 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D clem_01895 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D clem_01885 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D clem_04400 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D clem_01905 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D clem_01875 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D clem_11970 ispU; Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D clem_01880 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D clem_09135 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D clem_04515 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D clem_06700 pbpF; Penicillin-binding protein 1F K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D clem_06215 spoVD; Stage V sporulation protein D K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D clem_04395 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D clem_06655 dacA; D-alanyl-D-alanine carboxypeptidase DacA precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D clem_02045 dacB; D-alanyl-D-alanine carboxypeptidase DacB precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:lcd00552]
D clem_13965 LicD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:lcd00543]
D clem_14620 patA; Peptidoglycan O-acetyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI
D clem_09505 Acyltransferase family protein K16568 exoZ; exopolysaccharide production protein ExoZ
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:lcd00730]
D clem_14675 thiE; Thiamine-phosphate synthase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D clem_04360 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D clem_14690 bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D clem_14680 thiG; Thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D clem_03795 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D clem_02365 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D clem_05725 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:lcd00740]
D clem_07960 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D clem_07970 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D clem_07955 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D clem_07965 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D clem_04590 ribF; Riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D clem_14525 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D clem_03000 ubiX_1; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D clem_04700 ubiX_2; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:lcd00750]
D clem_12380 pdxH_3; Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D clem_01735 pdxH_1; Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D clem_09740 pdxH_2; Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D clem_04410 pdxB; Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D clem_05765 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D clem_13580 pdxA1; 4-hydroxythreonine-4-phosphate dehydrogenase 1 K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D clem_04645 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
C 00760 Nicotinate and nicotinamide metabolism [PATH:lcd00760]
D clem_09165 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D clem_09170 nadA; Quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D clem_09140 nadC; Nicotinate-nucleotide pyrophosphorylase [carboxylating] K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D clem_06975 pncB2; Nicotinate phosphoribosyltransferase pncB2 K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D clem_05860 xapA; Purine nucleoside phosphorylase 2 K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D clem_05475 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D clem_06050 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D clem_09625 nadE; Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D clem_03970 pncC_1; Nicotinamide-nucleotide amidohydrolase PncC K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D clem_05190 pncC_2; Nicotinamide-nucleotide amidohydrolase PncC K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D clem_06970 sttH; Streptothricin hydrolase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D clem_01210 ppnK; putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D clem_08755 pntAA; NAD(P) transhydrogenase subunit alpha part 1 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D clem_08760 pntA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D clem_08765 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D clem_07120 sad; Succinate semialdehyde dehydrogenase [NAD(P)+] Sad K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:lcd00770]
D clem_13030 alsS_2; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_02125 alsS_1; Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D clem_01620 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D clem_01615 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D clem_04375 coaX; Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D clem_12830 coaBC; Coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D clem_01780 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D clem_06775 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D clem_09230 sfp; 4'-phosphopantetheinyl transferase sfp K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D clem_06680 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D clem_13245 panD; Aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:lcd00780]
D clem_10760 bioC; Malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D clem_13275 fabF_2; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D clem_06325 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_13280 fabF_3; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_14115 fabF_4; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_06315 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D clem_11940 fabZ_1; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D clem_11320 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D clem_06805 bioH; Pimeloyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D clem_06800 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D clem_06790 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D clem_06810 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D clem_06795 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D clem_09245 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:lcd00785]
D clem_06640 lipB; Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D clem_09545 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_05685 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D clem_05690 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D clem_01705 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D clem_01710 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D clem_07035 pdhA; Pyruvate dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D clem_07040 pdhB_2; Pyruvate dehydrogenase E1 component subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D clem_02070 pdhB_1; Pyruvate dehydrogenase E1 component subunit beta K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D clem_07045 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D clem_14060 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D clem_14070 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D clem_14050 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D clem_14055 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:lcd00790]
D clem_01550 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D clem_11700 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D clem_06470 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D clem_01410 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D clem_13575 dhfrIII; Dihydrofolate reductase type 3 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D clem_06030 folC; Bifunctional protein FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D clem_07960 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D clem_07025 pabB; Aminodeoxychorismate synthase component 1 K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D clem_03465 pabC; Aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D clem_14165 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D clem_10080 Putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D clem_10755 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D clem_14155 fabG_5; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D clem_02870 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D clem_14275 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D clem_12785 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D clem_03040 moaA; Cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D clem_03035 moaC; Cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D clem_03020 moaE; Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
C 00670 One carbon pool by folate [PATH:lcd00670]
D clem_13575 dhfrIII; Dihydrofolate reductase type 3 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D clem_05555 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D clem_03780 glyA2; Serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D clem_11565 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D clem_12155 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D clem_02000 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D clem_14050 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D clem_14200 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D clem_03455 putative 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:lcd00860]
D clem_10350 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D clem_10790 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D clem_06495 hemL; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D clem_03945 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D clem_02445 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D clem_02440 hemD; Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D clem_11690 hemE; Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D clem_05100 hemF; Coproporphyrinogen-III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D clem_06485 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D clem_03095 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D clem_03395 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D clem_02435 hemX; Putative uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D clem_03370 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D clem_03365 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lcd00130]
D clem_05825 chorismate pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D clem_05830 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D clem_00360 ubiD_1; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D clem_03000 ubiX_1; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D clem_04700 ubiX_2; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D clem_14565 ubiI; 2-octaprenylphenol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D clem_07615 ubiG; Ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D clem_14570 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D clem_14415 ubiE; Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D clem_14715 coq7; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D clem_02215 NAD(P)H dehydrogenase (quinone) K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D clem_09715 lly; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:lcd00900]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_02920 mvaA; 3-hydroxy-3-methylglutaryl-coenzyme A reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D clem_02860 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D clem_02865 hypothetical protein K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D clem_03000 ubiX_1; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D clem_04700 ubiX_2; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D clem_02915 fni; Isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D clem_11825 Farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D clem_11905 ispB; Octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D clem_11970 ispU; Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:lcd00907]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_06260 ycdF; Glucose 1-dehydrogenase 2 K13775 atuG; citronellol/citronellal dehydrogenase
D clem_11010 yngG; Hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D clem_06090 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D clem_13810 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:lcd00523]
D clem_09525 rmlA2; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D clem_01025 UDP-glucose 4-epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09415 rfbB_1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09275 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D clem_09410 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D clem_00980 wbiB; dTDP-L-rhamnose 4-epimerase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D clem_01025 UDP-glucose 4-epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09415 rfbB_1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D clem_08120 bla; Beta-lactamase Toho-1 precursor K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D clem_03665 hypothetical protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:lcd00261]
D clem_03990 ask; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D clem_03925 lysA; Diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D clem_11295 asd2; Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D clem_10445 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D clem_13780 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:lcd00521]
D clem_07310 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D clem_12820 algC_2; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_05275 algC_1; Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D clem_04350 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D clem_09525 rmlA2; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D clem_01025 UDP-glucose 4-epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09415 rfbB_1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09275 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D clem_09410 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D clem_07310 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:lcd00525]
D clem_09525 rmlA2; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D clem_01025 UDP-glucose 4-epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D clem_09415 rfbB_1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:lcd00401]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_10075 hisC2; Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07870 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D clem_04770 pabA; Aminodeoxychorismate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D clem_06310 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D clem_06315 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D clem_11320 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D clem_06320 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D clem_13290 acpXL; Acyl carrier protein AcpXL K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:lcd00999]
D clem_11650 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D clem_01335 aroE; Shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
D clem_01380 iucC; Aerobactin synthase K23447 sfnaB; staphyloferrin A synthase [EC:6.3.2.57]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:lcd00362]
D clem_06090 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D clem_03885 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D clem_02135 Carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D clem_06085 fadN; putative 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D clem_02075 acdA_1; Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:lcd00627]
D clem_06110 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D clem_03000 ubiX_1; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D clem_04700 ubiX_2; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:lcd00364]
D clem_03145 SnoaL-like polyketide cyclase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:lcd00625]
D clem_06095 adhT; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:lcd00361]
D clem_03145 SnoaL-like polyketide cyclase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:lcd00623]
D clem_03145 SnoaL-like polyketide cyclase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D clem_03885 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation [PATH:lcd00633]
D clem_10830 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D clem_06090 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:lcd00643]
D clem_05495 hmgA; Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D clem_09725 nagL; Maleylpyruvate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D clem_09720 Ureidoglycolate lyase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:lcd00930]
D clem_00120 alkB2; Alkane 1-monooxygenase 2 K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D clem_07190 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D clem_03885 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation [PATH:lcd00626]
D clem_06095 adhT; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
D clem_02980 bsdC_2; Phenolic acid decarboxylase subunit C K16874 hmfF; 2,5-furandicarboxylate decarboxylase 1
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:lcd03020]
D clem_13485 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D clem_13480 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D clem_13330 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D clem_11455 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:lcd03010]
D clem_05780 rpsA_2; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D clem_07670 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D clem_13420 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D clem_13335 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D clem_13365 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D clem_07165 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D clem_13470 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D clem_13380 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D clem_02560 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D clem_13455 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D clem_13340 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D clem_13475 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D clem_13345 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D clem_13385 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D clem_01540 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D clem_12980 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D clem_13405 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D clem_07160 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D clem_13430 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D clem_10720 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D clem_12230 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D clem_13500 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D clem_13435 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D clem_13450 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D clem_13445 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D clem_13390 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D clem_13375 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D clem_13490 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D clem_07150 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D clem_13495 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D clem_13505 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D clem_02555 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D clem_13400 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D clem_13355 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D clem_13415 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D clem_13325 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D clem_13370 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D clem_12995 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D clem_02530 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D clem_11885 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D clem_13425 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D clem_13440 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D clem_13395 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D clem_11890 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D clem_11880 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D clem_12045 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D clem_13410 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D clem_13360 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D clem_02235 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D clem_06295 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D clem_12050 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D clem_00040 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D clem_02525 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D clem_14890 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D clem_14875 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:lcd00970]
D clem_10300 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D clem_12915 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D clem_02345 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D clem_07205 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_02940 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_05160 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_11400 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_14610 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D clem_11355 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D clem_11245 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D clem_01770 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D clem_10290 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D clem_10295 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D clem_13535 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D clem_11250 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D clem_11395 tRNA-His K14226 tRNA-His; tRNA His
D clem_13560 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D clem_00325 tRNA-Ser K14228 tRNA-Leu; tRNA Leu
D clem_09195 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_11240 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_11390 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_01435 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_02935 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D clem_02930 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D clem_12250 tRNA-Met K14230 tRNA-Met; tRNA Met
D clem_01510 tRNA-Met K14230 tRNA-Met; tRNA Met
D clem_05635 tRNA-Met K14230 tRNA-Met; tRNA Met
D clem_09800 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D clem_11405 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D clem_11910 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D clem_12685 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D clem_04935 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D clem_07200 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D clem_07935 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D clem_08740 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D clem_13545 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D clem_13530 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D clem_13520 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D clem_13540 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D clem_02510 tRNA-Val K14237 tRNA-Val; tRNA Val
D clem_11360 tRNA-Val K14237 tRNA-Val; tRNA Val
D clem_10350 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D clem_07800 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D clem_07805 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D clem_07795 gatC; Glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D clem_05580 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D clem_03985 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D clem_06825 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D clem_09745 asnS; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D clem_11085 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D clem_11080 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D clem_02515 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D clem_11925 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D clem_05585 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D clem_14260 metG_1; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D clem_02000 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D clem_03730 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D clem_06065 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D clem_04595 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D clem_04140 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D clem_11715 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D clem_10900 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D clem_06435 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D clem_02535 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D clem_02540 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D clem_02340 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D clem_05940 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:lcd03060]
D clem_13350 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D clem_13515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D clem_01430 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D clem_10095 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D clem_10090 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D clem_10100 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D clem_00055 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D clem_12360 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_06740 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_11210 secB; Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D clem_12975 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D clem_02730 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D clem_14430 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D clem_14435 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D clem_00385 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D clem_10215 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D clem_04600 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:lcd04122]
D clem_04360 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D clem_11755 tusA; Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D clem_06285 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D clem_11750 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D clem_03020 moaE; Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D clem_03040 moaA; Cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D clem_03015 moeZ_1; putative adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D clem_14670 moeZ_3; putative adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D clem_03035 moaC; Cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D clem_14685 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:lcd03018]
D clem_14220 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D clem_11275 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D clem_02800 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D clem_01545 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D clem_04015 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D clem_00550 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D clem_03650 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D clem_08800 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D clem_00355 hypothetical protein K03628 rho; transcription termination factor Rho
D clem_11665 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D clem_03850 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D clem_14850 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D clem_13625 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D clem_06475 pcnB; Poly(A) polymerase I precursor K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:lcd03030]
D clem_06270 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_00860 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_08935 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D clem_12925 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D clem_06340 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D clem_06055 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D clem_10680 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D clem_14870 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D clem_09595 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D clem_12240 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D clem_12615 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08685 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_13315 ssb_3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_06265 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D clem_06205 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D clem_14125 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D clem_08965 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:lcd03410]
D clem_14250 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D clem_07620 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D clem_05045 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D clem_05320 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D clem_01795 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D clem_14755 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D clem_05815 Uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D clem_02220 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D clem_02225 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D clem_14125 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D clem_06725 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D clem_08965 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:lcd03420]
D clem_04715 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D clem_13115 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D clem_14600 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D clem_10745 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D clem_11105 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D clem_14125 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D clem_08965 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:lcd03430]
D clem_03960 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D clem_02605 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D clem_06835 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D clem_11105 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D clem_04735 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D clem_11820 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D clem_06725 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D clem_12615 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08685 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_13315 ssb_3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08935 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D clem_14870 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D clem_12925 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D clem_06055 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D clem_06340 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D clem_06270 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_00860 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_10680 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D clem_08965 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D clem_02280 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:lcd03440]
D clem_06725 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D clem_12615 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08685 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_13315 ssb_3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_14865 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D clem_04630 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D clem_12935 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D clem_03975 recombinase A K03553 recA; recombination protein RecA
D clem_14125 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D clem_05510 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D clem_07085 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D clem_05505 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D clem_11740 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D clem_08935 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D clem_14870 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D clem_12925 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D clem_06055 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D clem_06340 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D clem_06270 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_00860 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_10680 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D clem_14170 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:lcd03450]
D clem_01135 ykoV; putative DNA repair protein YkoV K10979 ku; DNA end-binding protein Ku
D clem_10160 ykoU; putative ATP-dependent DNA ligase YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D clem_10165 Putative DNA ligase-like protein/MT0965 K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:lcd02010]
D clem_09025 potD; Spermidine/putrescine-binding periplasmic protein precursor K11069 potD; spermidine/putrescine transport system substrate-binding protein
D clem_09020 ydcV; Inner membrane ABC transporter permease protein YdcV K11070 potC; spermidine/putrescine transport system permease protein
D clem_09015 potB; Spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D clem_09010 potA; Spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D clem_04820 mlaC; putative phospholipid-binding protein MlaC precursor K07323 mlaC; phospholipid transport system substrate-binding protein
D clem_04815 mlaD; putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D clem_02890 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D clem_04810 mlaE_2; putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D clem_02900 mlaE_1; putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D clem_04825 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein
D clem_04805 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D clem_02895 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D clem_09690 ugpB; sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D clem_07755 ugpA; sn-glycerol-3-phosphate transport system permease protein UgpA K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D clem_07750 lacG; Lactose transport system permease protein LacG K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D clem_07745 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D clem_11050 metQ; D-methionine-binding lipoprotein MetQ precursor K02073 metQ; D-methionine transport system substrate-binding protein
D clem_11045 metI; D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D clem_11040 metN; Methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D clem_09290 kpsM; Polysialic acid transport protein KpsM K09690 wzm; homopolymeric O-antigen transport system permease protein
D clem_09285 tagH; Teichoic acids export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D clem_00435 lolC; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D clem_09770 lolE; Lipoprotein-releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D clem_00440 lolD_1; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D clem_09765 lolD_3; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D clem_08845 ccmC; Heme exporter protein C K02195 ccmC; heme exporter protein C
D clem_08850 ccmB; Heme exporter protein B K02194 ccmB; heme exporter protein B
D clem_08855 ccmA; Cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D clem_10670 lptF; Lipopolysaccharide export system permease protein LptF K07091 lptF; lipopolysaccharide export system permease protein
D clem_10665 lptG; Lipopolysaccharide export system permease protein LptG K11720 lptG; lipopolysaccharide export system permease protein
D clem_04775 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D clem_02740 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D clem_02735 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D clem_10945 msbA_2; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D clem_00225 apxIB; Toxin RTX-I translocation ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D clem_08920 prsD; Type I secretion system ATP-binding protein PrsD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C 02060 Phosphotransferase system (PTS) [PATH:lcd02060]
D clem_14215 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D clem_12075 crh; HPr-like protein Crh K08485 ptsO; phosphocarrier protein NPr
D clem_12065 ptsN; Nitrogen regulatory protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:lcd03070]
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
D clem_05630 gspD; Putative type II secretion system protein D precursor K02453 gspD; general secretion pathway protein D
D clem_05025 hypothetical protein K02452 gspC; general secretion pathway protein C
D clem_06145 epsF_1; Type II secretion system protein F K02455 gspF; general secretion pathway protein F
D clem_06140 epsG; Type II secretion system protein G precursor K02456 gspG; general secretion pathway protein G
D clem_00095 pulG; Type II secretion system protein G precursor K02456 gspG; general secretion pathway protein G
D clem_06135 gspH; Putative type II secretion system protein H precursor K02457 gspH; general secretion pathway protein H
D clem_06130 Bacterial type II secretion system protein I/J K02458 gspI; general secretion pathway protein I
D clem_06125 xcpW; Type II secretion system protein J precursor K02459 gspJ; general secretion pathway protein J
D clem_06120 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D clem_10240 GspL-like protein K02461 gspL; general secretion pathway protein L
D clem_10245 epsM_2; Type II secretion system protein M K02462 gspM; general secretion pathway protein M
D clem_05625 epsE_1; Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D clem_10095 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D clem_10090 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D clem_13515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D clem_01430 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D clem_13350 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D clem_10100 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D clem_00055 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D clem_12360 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_06740 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_02730 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D clem_11210 secB; Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D clem_12975 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D clem_14430 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D clem_14435 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D clem_00385 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D clem_03590 hypothetical protein K11892 impK; type VI secretion system protein ImpK
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:lcd02020]
D clem_05900 cpxA; Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D clem_05905 ompR_1; Transcriptional regulatory protein OmpR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D clem_12315 rstB; Sensor protein RstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D clem_12340 rstA; Transcriptional regulatory protein RstA K07661 rstA; two-component system, OmpR family, response regulator RstA
D clem_05640 degQ; Periplasmic pH-dependent serine endoprotease DegQ precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D clem_08510 cusB_1; Cation efflux system protein CusB precursor K07798 cusB; membrane fusion protein, copper/silver efflux system
D clem_08505 cusA; Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D clem_05515 qseC; Sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D clem_05520 qseB; Transcriptional regulatory protein QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D clem_06020 fliC; B-type flagellin K02406 fliC; flagellin
D clem_04100 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D clem_10475 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D clem_04105 pomA; Chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D clem_03575 kdpD; Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D clem_08030 kdpA; Potassium-transporting ATPase A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D clem_08025 kdpB; Potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D clem_08020 kdpC; Potassium-transporting ATPase C chain K01548 kdpC; potassium-transporting ATPase KdpC subunit
D clem_04920 arcB_1; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D clem_08145 arcB_3; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D clem_03365 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D clem_00005 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D clem_10030 maeA_2; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D clem_05465 maeA_1; putative NAD-dependent malic enzyme 2 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D clem_10355 barA; Signal transduction histidine-protein kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D clem_10750 uvrY; Response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D clem_12395 hypothetical protein K03563 csrA; carbon storage regulator
D clem_08550 csrA_1; Carbon storage regulator K03563 csrA; carbon storage regulator
D clem_09495 csrA_2; Carbon storage regulator K03563 csrA; carbon storage regulator
D clem_07175 carbon storage regulator K03563 csrA; carbon storage regulator
D clem_10285 bvgS; Virulence sensor protein BvgS precursor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D clem_07685 glnD; Bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D clem_10180 puuA; Gamma-glutamylputrescine synthetase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_06150 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_12055 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D clem_10370 pilE1; Fimbrial protein precursor K02650 pilA; type IV pilus assembly protein PilA
D clem_01095 fixL; Sensor protein FixL K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D clem_08910 zraR; Transcriptional regulatory protein ZraR K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D clem_04275 zraS; Sensor protein ZraS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D clem_04280 qseF; Transcriptional regulatory protein QseF K10943 flrC; two-component system, response regulator FlrC
D clem_04755 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D clem_02565 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D clem_02570 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D clem_02575 petC; Cytochrome c1 precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D clem_06530 appC; Cytochrome bd-II ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D clem_06535 cydB; Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
D clem_12750 hypothetical protein K19620 phcB; extracellular factor (EF) 3-hydroxypalmitic acid methyl ester biosynthesis protein
D clem_05435 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D clem_02275 celE; Endoglucanase E-5 precursor K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D clem_07825 Anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D clem_02565 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:lcd02024]
D clem_02460 cqsA_1; CAI-1 autoinducer synthase K10915 cqsA; CAI-1 autoinducer synthase [EC:2.3.-.-]
D clem_08125 cqsA_2; CAI-1 autoinducer synthase K10915 cqsA; CAI-1 autoinducer synthase [EC:2.3.-.-]
D clem_14850 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D clem_04770 pabA; Aminodeoxychorismate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D clem_11675 aroH; Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D clem_05515 qseC; Sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D clem_05520 qseB; Transcriptional regulatory protein QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D clem_10390 gadC_3; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D clem_01585 gadC_1; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D clem_07590 gadC_2; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D clem_07015 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_04705 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_02180 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D clem_07970 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D clem_08960 hbpA; Heme-binding protein A precursor K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D clem_08955 oppB; Oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D clem_08950 gsiD; Glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D clem_10915 gsiA; Glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D clem_00055 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D clem_11640 bprV; Extracellular basic protease precursor K14645 K14645; serine protease [EC:3.4.21.-]
D clem_13515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D clem_01430 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D clem_13350 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D clem_10100 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D clem_12360 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_06740 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_02730 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D clem_11210 secB; Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D clem_12975 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:lcd02030]
D clem_04295 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D clem_04040 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D clem_04045 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D clem_10475 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D clem_04105 pomA; Chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D clem_10480 motB_2; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_04110 motB_1; Motility protein B K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:lcd02040]
D clem_04285 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D clem_04290 fliF; Flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D clem_04295 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D clem_04300 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D clem_04305 fliI; Flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D clem_04310 flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ
D clem_07575 fliK; Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D clem_04040 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D clem_04045 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D clem_04050 fliO; Flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D clem_04055 fliP; Flagellar biosynthetic protein FliP precursor K02419 fliP; flagellar biosynthesis protein FliP
D clem_04060 fliQ; Flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D clem_04065 fliR; Flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D clem_04080 flhA; Flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D clem_04075 flhB_3; Flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D clem_07820 flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D clem_05105 flgB; Flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D clem_05110 flgC; Flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D clem_05115 flgD; Basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D clem_05120 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D clem_05125 flgF; Flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D clem_05130 flgG; Flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D clem_05135 flgH; Flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D clem_05140 flgI; Flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D clem_05145 flgJ; Peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D clem_05150 flgK; Flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D clem_05155 flgL; Flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D clem_00595 pal_1; Peptidoglycan-associated lipoprotein precursor K21218 motY; sodium-type flagellar protein MotY
D clem_06020 fliC; B-type flagellin K02406 fliC; flagellin
D clem_06010 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D clem_06005 fliS; Flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D clem_10475 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D clem_04105 pomA; Chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D clem_10480 motB_2; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_04110 motB_1; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_07825 Anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D clem_07830 FlgN protein K02399 flgN; flagellar biosynthesis protein FlgN
D clem_12245 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D clem_08910 zraR; Transcriptional regulatory protein ZraR K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D clem_12055 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D clem_04280 qseF; Transcriptional regulatory protein QseF K10943 flrC; two-component system, response regulator FlrC
D clem_04100 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D clem_02800 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis [PATH:lcd05134]
D clem_10730 hcpC_2; Putative beta-lactamase HcpC precursor K15474 enhC; enhanced entry protein EnhC
D clem_03850 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D clem_04610 hypothetical protein K15481 lidA; effector protein LidA
D clem_01695 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D clem_10220 lepA; Elongation factor 4 K03596 lepA; GTP-binding protein LepA
D clem_06020 fliC; B-type flagellin K02406 fliC; flagellin
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:lcd01501]
D clem_09200 muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D clem_14780 ybbD_2; putative lipoprotein YbbD precursor K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D clem_04945 ybbD_1; putative lipoprotein YbbD precursor K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D clem_08120 bla; Beta-lactamase Toho-1 precursor K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D clem_03665 hypothetical protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D clem_03740 mdtA_1; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_04580 acrA; Multidrug efflux pump subunit AcrA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_11525 bepF_3; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_07465 mdtA_2; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_03735 bepE_1; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_04585 acrB; Multidrug efflux pump subunit AcrB K18138 acrB; multidrug efflux pump
D clem_11530 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_07470 mdtC; Multidrug resistance protein MdtC K18138 acrB; multidrug efflux pump
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
D clem_04515 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D clem_06215 spoVD; Stage V sporulation protein D K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D clem_04395 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:lcd01502]
D clem_01905 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D clem_09590 alr; Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D clem_01875 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D clem_01880 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D clem_09135 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lcd01503]
D clem_14745 pagP; Lipid A palmitoyltransferase PagP precursor K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D clem_05900 cpxA; Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D clem_05905 ompR_1; Transcriptional regulatory protein OmpR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D clem_02600 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D clem_05640 degQ; Periplasmic pH-dependent serine endoprotease DegQ precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D clem_13725 dsbA_2; Thiol:disulfide interchange protein DsbA precursor K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D clem_03740 mdtA_1; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_04580 acrA; Multidrug efflux pump subunit AcrA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_11525 bepF_3; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_07465 mdtA_2; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_03735 bepE_1; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_04585 acrB; Multidrug efflux pump subunit AcrB K18138 acrB; multidrug efflux pump
D clem_11530 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_07470 mdtC; Multidrug resistance protein MdtC K18138 acrB; multidrug efflux pump
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
D clem_11935 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:lcd01000]
C 01001 Protein kinases [BR:lcd01001]
D clem_10015 hipA; Serine/threonine-protein kinase HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D clem_12315 rstB; Sensor protein RstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D clem_05900 cpxA; Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D clem_05515 qseC; Sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D clem_03575 kdpD; Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D clem_04920 arcB_1; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D clem_08145 arcB_3; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D clem_10355 barA; Signal transduction histidine-protein kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D clem_10285 bvgS; Virulence sensor protein BvgS precursor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D clem_01095 fixL; Sensor protein FixL K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D clem_04275 zraS; Sensor protein ZraS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:lcd01009]
D clem_11645 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D clem_06170 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:lcd01002]
D clem_04600 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D clem_06590 outO; Type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D clem_07695 guaA_1; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D clem_06850 Putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D clem_00225 apxIB; Toxin RTX-I translocation ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D clem_11555 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D clem_00970 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D clem_14010 asnB; Asparagine synthetase [glutamine-hydrolyzing] 1 K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D clem_00475 yfkM; General stress protein 18 K05520 yhbO; deglycase [EC:3.5.1.124]
D clem_07185 ynhG; putative L,D-transpeptidase YnhG precursor K16291 erfK; L,D-transpeptidase ErfK/SrfK
D clem_01315 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D clem_13820 prlC; Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D clem_10130 pepO; Neutral endopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D clem_02720 Peptidase M16 inactive domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D clem_02725 ptrA; Protease 3 precursor K07263 pqqL; zinc protease [EC:3.4.24.-]
D clem_10675 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D clem_10705 pepB; Peptidase B K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D clem_07630 cpg2; Carboxypeptidase G2 precursor K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D clem_04955 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D clem_07680 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D clem_14575 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D clem_01280 Bacterial leucyl aminopeptidase precursor K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10]
D clem_01405 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D clem_13080 hypothetical protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D clem_11180 hypothetical protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D clem_07975 yfgC; TPR repeat-containing protein YfgC precursor K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D clem_10780 rseP_1; Regulator of sigma-E protease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D clem_11960 rseP_2; Regulator of sigma-E protease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D clem_05640 degQ; Periplasmic pH-dependent serine endoprotease DegQ precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D clem_11640 bprV; Extracellular basic protease precursor K14645 K14645; serine protease [EC:3.4.21.-]
D clem_06655 dacA; D-alanyl-D-alanine carboxypeptidase DacA precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D clem_02045 dacB; D-alanyl-D-alanine carboxypeptidase DacB precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D clem_11380 clpP; ATP-dependent Clp protease proteolytic subunit precursor K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D clem_11370 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D clem_08720 lexA; LexA repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D clem_10215 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D clem_11110 pip; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D clem_11985 ctpA; Carboxy-terminal processing protease CtpA precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D clem_04345 sppA; Putative signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D clem_08865 sohB; putative protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D clem_01110 cphB; Cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D clem_09900 ykfA_2; putative murein peptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D clem_08810 ykfA_1; putative murein peptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D clem_02185 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D clem_01115 iaaA; Isoaspartyl peptidase precursor K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D clem_01785 ggt; Gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D clem_04200 peptidase PmbA K03592 pmbA; PmbA protein
D clem_04695 protease TldD K03568 tldD; TldD protein
D clem_06695 hypothetical protein K06894 yfhM; alpha-2-macroglobulin
D clem_12020 hflC; Modulator of FtsH protease HflC K04087 hflC; modulator of FtsH protease HflC
D clem_12025 hflK_2; Modulator of FtsH protease HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:lcd01003]
D clem_06700 pbpF; Penicillin-binding protein 1F K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D clem_04515 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:lcd01005]
D clem_11935 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D clem_06195 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D clem_01925 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D clem_14120 lpxD_2; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D clem_11945 lpxD_1; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D clem_07005 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D clem_10940 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D clem_13270 htrB; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D clem_10810 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D clem_14745 pagP; Lipid A palmitoyltransferase PagP precursor K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D clem_07945 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D clem_10405 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D clem_04790 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D clem_04795 kdsD; Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D clem_09060 O-Antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D clem_02620 rfaQ; Lipopolysaccharide core heptosyltransferase RfaQ K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D clem_00140 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D clem_11075 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D clem_09260 Chain length determinant protein K05789 wzzB; chain length determinant protein (polysaccharide antigen chain regulator)
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lcd01011]
D clem_04835 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D clem_01900 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D clem_01895 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D clem_01885 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D clem_04400 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D clem_01905 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D clem_09590 alr; Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D clem_11415 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D clem_09900 ykfA_2; putative murein peptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D clem_08810 ykfA_1; putative murein peptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D clem_01880 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D clem_09135 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D clem_12260 murJ_2; putative peptidoglycan biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D clem_10710 murJ_1; putative peptidoglycan biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D clem_04515 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D clem_06700 pbpF; Penicillin-binding protein 1F K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D clem_06215 spoVD; Stage V sporulation protein D K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D clem_04395 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D clem_06655 dacA; D-alanyl-D-alanine carboxypeptidase DacA precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D clem_02045 dacB; D-alanyl-D-alanine carboxypeptidase DacB precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D clem_07185 ynhG; putative L,D-transpeptidase YnhG precursor K16291 erfK; L,D-transpeptidase ErfK/SrfK
D clem_09655 slt; Soluble lytic murein transglycosylase precursor K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D clem_07480 mltA_2; Membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D clem_14460 mltB_2; Membrane-bound lytic murein transglycosylase B precursor K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D clem_10235 mltB_1; Membrane-bound lytic murein transglycosylase B precursor K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D clem_05530 mltD; Membrane-bound lytic murein transglycosylase D precursor K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D clem_06330 putative aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D clem_06660 RlpA-like protein precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D clem_02600 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:lcd01004]
D clem_06310 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D clem_06305 fabH_2; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D clem_01850 fabH_1; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D clem_13275 fabF_2; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D clem_06325 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_13280 fabF_3; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_14115 fabF_4; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D clem_06315 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D clem_11940 fabZ_1; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D clem_11320 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D clem_13305 fabL; Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL K10780 fabL; enoyl-[acyl-carrier protein] reductase III [EC:1.3.1.104]
D clem_05445 tesA; Esterase TesA precursor K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D clem_01050 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D clem_01810 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D clem_10840 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D clem_13745 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D clem_11030 acsA; Acetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D clem_07015 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_04705 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_06300 plsX; Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D clem_12220 plsY; putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D clem_01790 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:lcd01008]
C 01006 Prenyltransferases [BR:lcd01006]
D clem_11825 Farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D clem_11905 ispB; Octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D clem_11970 ispU; Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D clem_02610 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D clem_05830 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D clem_03370 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:lcd01007]
D clem_10350 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D clem_05580 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D clem_02340 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D clem_05940 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D clem_05585 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D clem_11715 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D clem_14260 metG_1; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D clem_04595 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D clem_03730 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D clem_06065 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D clem_04140 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D clem_06825 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D clem_09745 asnS; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D clem_06435 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D clem_11085 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D clem_11080 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D clem_11925 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D clem_10900 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D clem_02515 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D clem_03985 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D clem_02535 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D clem_02540 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D clem_14605 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_03830 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D clem_06715 alaC; Glutamate-pyruvate aminotransferase AlaC K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D clem_10075 hisC2; Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_07870 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D clem_10870 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D clem_06800 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D clem_00565 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D clem_13890 davT; 5-aminovalerate aminotransferase DavT K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D clem_06790 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D clem_06495 hemL; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D clem_06650 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D clem_06680 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D clem_05765 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D clem_05795 wbpE; UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D clem_09520 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450 [BR:lcd00199]
C 00194 Photosynthesis proteins [BR:lcd00194]
D clem_08340 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D clem_00275 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D clem_08335 atpD_2; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D clem_00270 atpD_1; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D clem_08370 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D clem_00265 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D clem_08365 atpA_2; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D clem_00260 atpA_1; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D clem_00255 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D clem_08360 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D clem_00250 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D clem_08355 atpE_2; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D clem_00245 atpE_1; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D clem_08350 atpB_2; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D clem_00240 atpB_1; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D clem_08345 Putative F0F1-ATPase subunit (ATPase_gene1) K02116 atpI; ATP synthase protein I
D clem_00235 F0F1 ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:lcd03000]
D clem_01960 tetD; Transposon Tn10 TetD protein K13652 K13652; AraC family transcriptional regulator
D clem_11190 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D clem_10925 oxyR; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D clem_14390 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D clem_06905 Bacterial regulatory proteins, tetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D clem_05395 slyA; Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D clem_05665 ycgE; HTH-type transcriptional repressor YcgE K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D clem_13170 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D clem_02180 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D clem_12655 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D clem_09245 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D clem_06190 fis_3; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_01760 fis_1; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_04370 fis_2; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_10010 hipB; Antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D clem_08910 zraR; Transcriptional regulatory protein ZraR K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D clem_09850 transcriptional repressor DicA K07726 K07726; putative transcriptional regulator
D clem_09890 higA-2; Antitoxin igA-2 K07726 K07726; putative transcriptional regulator
D clem_07595 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D clem_12710 Ribbon-helix-helix protein, copG family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D clem_12170 csoR; Copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D clem_10375 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D clem_14300 parB_2; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D clem_02040 parB_1; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D clem_09000 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D clem_08270 Prophage CP4-57 regulatory protein (AlpA) K07733 alpA; prophage regulatory protein
D clem_03420 hypothetical protein K07735 algH; putative transcriptional regulator
D clem_10805 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D clem_03785 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D clem_04380 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:lcd03021]
D clem_13330 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D clem_13485 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D clem_13480 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D clem_11455 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D clem_12245 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D clem_05485 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D clem_02745 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D clem_12055 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D clem_04100 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D clem_01520 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
D clem_03790 hypothetical protein K03625 nusB; transcription antitermination protein NusB
D clem_13510 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
D clem_02580 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
D clem_02585 sspB; Stringent starvation protein B K03600 sspB; stringent starvation protein B
D clem_10805 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D clem_10640 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D clem_00355 hypothetical protein K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:lcd03019]
D clem_00180 Regulator of chromosome condensation (RCC1) repeat protein K11493 RCC1; regulator of chromosome condensation
D clem_02145 Regulator of chromosome condensation (RCC1) repeat protein K11493 RCC1; regulator of chromosome condensation
D clem_11275 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D clem_10210 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D clem_00550 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D clem_02375 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D clem_04015 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D clem_03650 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D clem_08800 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D clem_02800 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D clem_01545 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D clem_00355 hypothetical protein K03628 rho; transcription termination factor Rho
D clem_11665 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D clem_03850 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D clem_14850 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D clem_13625 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D clem_06475 pcnB; Poly(A) polymerase I precursor K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D clem_14220 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D clem_12395 hypothetical protein K03563 csrA; carbon storage regulator
D clem_08550 csrA_1; Carbon storage regulator K03563 csrA; carbon storage regulator
D clem_09495 csrA_2; Carbon storage regulator K03563 csrA; carbon storage regulator
D clem_07175 carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:lcd03011]
D clem_05780 rpsA_2; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D clem_07670 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D clem_13420 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D clem_13335 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D clem_13365 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D clem_07165 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D clem_13470 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D clem_13380 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D clem_02560 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D clem_13455 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D clem_13340 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D clem_13475 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D clem_13345 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D clem_13385 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D clem_01540 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D clem_12980 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D clem_13405 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D clem_07160 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D clem_13430 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D clem_10720 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D clem_12230 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D clem_13500 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D clem_13435 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D clem_13450 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D clem_13445 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D clem_13390 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D clem_13375 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D clem_07150 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D clem_13495 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D clem_13505 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D clem_13490 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D clem_02555 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D clem_13400 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D clem_13355 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D clem_13415 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D clem_13325 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D clem_13370 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D clem_12995 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D clem_02530 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D clem_11885 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D clem_13425 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D clem_13440 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D clem_13395 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D clem_11880 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D clem_12045 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D clem_13410 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D clem_13360 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D clem_02235 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D clem_06295 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D clem_12050 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D clem_00040 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D clem_02525 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D clem_11890 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D clem_14890 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D clem_14875 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C 03009 Ribosome biogenesis [BR:lcd03009]
D clem_10210 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D clem_02375 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D clem_04625 era; GTPase Era K03595 era; GTPase
D clem_11875 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D clem_10805 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D clem_01520 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
D clem_03790 hypothetical protein K03625 nusB; transcription antitermination protein NusB
D clem_13510 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
D clem_00415 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D clem_02005 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D clem_02715 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D clem_00345 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D clem_14290 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D clem_04385 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D clem_00125 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D clem_11070 rsmJ; Ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D clem_00555 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D clem_01400 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D clem_06220 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D clem_07900 rlmI; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D clem_05545 rlmJ; Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D clem_14790 rlmL; Ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D clem_13050 rlmM; Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D clem_06980 rlmN; Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D clem_06665 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D clem_05955 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D clem_11265 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D clem_05650 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D clem_09090 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D clem_05700 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D clem_03380 rimK_2; Ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D clem_12985 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D clem_03835 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D clem_12150 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D clem_11305 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D clem_07495 ycfD; 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D clem_11275 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D clem_03425 yqgF; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D clem_03650 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D clem_02365 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D clem_06455 der; GTPase Der K03977 engA; GTPase
D clem_14845 hflX; GTPase HflX K03665 hflX; GTPase
D clem_12120 ywlC_2; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D clem_11450 spoT; Bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D clem_01530 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D clem_01515 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D clem_09840 ribosome-associated protein K14761 rlbA; ribosome-associated protein
D clem_06225 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D clem_05915 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D clem_01395 RNA-binding protein K07574 yhbY; RNA-binding protein
D clem_14795 hypothetical protein K09889 yjgA; ribosome-associated protein
D clem_12060 hpf; Ribosome hibernation promoting factor K05808 hpf; ribosome hibernation promoting factor
D clem_11900 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
D clem_06290 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:lcd03016]
D clem_00910 rna; Ribonuclease I precursor K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D clem_02370 cca; Multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D clem_04745 rtcB; RNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D clem_04750 hypothetical protein K24956 ZBTB8OS; protein archease
D clem_10350 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D clem_10900 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D clem_04595 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D clem_06065 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D clem_14260 metG_1; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D clem_05580 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D clem_11715 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D clem_04140 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D clem_06825 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D clem_03985 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D clem_09745 asnS; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D clem_02515 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D clem_11925 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D clem_05585 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D clem_03730 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D clem_06435 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D clem_02535 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D clem_02540 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D clem_02340 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D clem_05940 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D clem_11115 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D clem_10535 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D clem_01555 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D clem_12040 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D clem_05560 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D clem_01535 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D clem_04855 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D clem_04360 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D clem_12120 ywlC_2; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D clem_02610 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D clem_00060 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D clem_14285 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D clem_05330 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D clem_00045 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D clem_00585 rnt; Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D clem_11470 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D clem_11725 2',5' RNA ligase family K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D clem_10860 putative ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D clem_11085 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D clem_11080 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D clem_07690 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D clem_06730 dus; putative tRNA-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D clem_05655 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D clem_01020 bchM; Magnesium-protoporphyrin O-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D clem_12990 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D clem_04355 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D clem_11125 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D clem_06285 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D clem_11750 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D clem_10885 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D clem_11755 tusA; Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D clem_07100 ygfZ; tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D clem_06995 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D clem_06520 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D clem_10110 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D clem_14275 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D clem_14165 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D clem_02870 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D clem_12785 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D clem_02380 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D clem_10105 tgt_2; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D clem_02475 tgt_1; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D clem_09220 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D clem_10415 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D clem_12225 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D clem_02595 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D clem_00550 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D clem_01545 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:lcd03012]
D clem_01525 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D clem_02520 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D clem_10125 yheS_2; putative ABC transporter ATP-binding protein YheS K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D clem_07665 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D clem_13460 tufA_1; Elongation factor Tu K02358 tuf; elongation factor Tu
D clem_13525 tufA_2; Elongation factor Tu K02358 tuf; elongation factor Tu
D clem_13465 fusA; Elongation factor G K02355 fusA; elongation factor G
D clem_10795 prfA_2; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D clem_07655 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D clem_10800 prmC; Release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D clem_11895 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D clem_04205 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D clem_13635 efp; Elongation factor P K02356 efp; elongation factor P
D clem_10590 epmA; Elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D clem_13630 epmB; L-lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D clem_12130 epmC; Elongation factor P hydroxylase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D clem_04135 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D clem_08775 prfC; Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:lcd03110]
D clem_09075 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D clem_04340 clpB; Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D clem_11375 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D clem_02190 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D clem_06170 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D clem_11665 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D clem_03850 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D clem_11660 dnaJ_2; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D clem_03285 cbpA; Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D clem_10815 djlA; DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein
D clem_01265 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D clem_11670 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D clem_13220 18 kDa heat shock protein K13993 HSP20; HSP20 family protein
D clem_03845 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D clem_05640 degQ; Periplasmic pH-dependent serine endoprotease DegQ precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D clem_01405 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D clem_08350 atpB_2; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D clem_00240 atpB_1; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D clem_11210 secB; Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D clem_07675 spy; Spheroplast protein Y precursor K06006 cpxP; periplasmic protein CpxP/Spy
D clem_11640 bprV; Extracellular basic protease precursor K14645 K14645; serine protease [EC:3.4.21.-]
D clem_02480 ppiB; Peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D clem_11350 ppiD; Peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D clem_09205 mip; Outer membrane protein MIP precursor K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D clem_13585 surA; Chaperone SurA precursor K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D clem_00350 trxA; Thioredoxin K03671 TXN; thioredoxin
D clem_05730 trxC; Putative thioredoxin-2 K03671 TXN; thioredoxin
D clem_11205 grxC; Glutaredoxin-3 K03676 grxC; glutaredoxin 3
D clem_00575 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D clem_13725 dsbA_2; Thiol:disulfide interchange protein DsbA precursor K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D clem_02470 dsbB; Disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D clem_03840 dsbD_2; Thiol:disulfide interchange protein DsbD precursor K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D clem_08830 dsbE; Thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:lcd04131]
D clem_06985 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D clem_02645 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_13805 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D clem_13795 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D clem_06170 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D clem_10045 ltaA; putative glycolipid permease LtaA K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:lcd03051]
D clem_06170 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:lcd03032]
D clem_06265 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D clem_11365 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D clem_02545 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D clem_00640 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D clem_00005 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D clem_09595 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D clem_12240 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D clem_12615 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08685 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_13315 ssb_3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08935 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D clem_14870 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D clem_10680 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D clem_06055 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D clem_06340 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D clem_06270 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_00860 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_12925 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D clem_06205 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D clem_14125 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D clem_08965 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D clem_02280 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D clem_01370 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D clem_05760 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D clem_14860 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D clem_00280 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D clem_03900 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D clem_01980 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D clem_05205 Eukaryotic DNA topoisomerase I, catalytic core K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:lcd03036]
D clem_00180 Regulator of chromosome condensation (RCC1) repeat protein K11493 RCC1; regulator of chromosome condensation
D clem_02145 Regulator of chromosome condensation (RCC1) repeat protein K11493 RCC1; regulator of chromosome condensation
D clem_10210 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_11365 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D clem_02545 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D clem_00640 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D clem_03285 cbpA; Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D clem_03290 cbpM; Chaperone modulatory protein CbpM K18997 cbpM; chaperone modulatory protein CbpM
D clem_00005 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D clem_00375 hspQ; Heat shock protein HspQ K11940 hspQ; heat shock protein HspQ
D clem_03890 mrgA; Metalloregulation DNA-binding stress protein K04047 dps; starvation-inducible DNA-binding protein
D clem_06190 fis_3; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_01760 fis_1; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_04370 fis_2; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_14850 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D clem_14390 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D clem_01860 smc_2; Chromosome partition protein Smc K03529 smc; chromosome segregation protein
D clem_05945 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D clem_05950 hypothetical protein K06024 scpB; segregation and condensation protein B
D clem_01915 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D clem_02805 ftsB; Cell division protein FtsB K05589 ftsB; cell division protein FtsB
D clem_02735 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D clem_04395 ftsI; Peptidoglycan synthase FtsI precursor K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D clem_04225 ftsK_2; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D clem_04390 ftsL; Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D clem_11710 ftsN; Cell division protein FtsN K03591 ftsN; cell division protein FtsN
D clem_01910 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D clem_01890 ftsW; Lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D clem_02740 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D clem_01920 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D clem_01865 zipA; Cell division protein ZipA K03528 zipA; cell division protein ZipA
D clem_14585 zapA; Cell division protein ZapA K09888 zapA; cell division protein ZapA
D clem_06770 zapD; Cell division protein ZapD K18778 zapD; cell division protein ZapD
D clem_01630 AFG1-like ATPase K06916 zapE; cell division protein ZapE
D clem_02600 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D clem_03740 mdtA_1; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_04580 acrA; Multidrug efflux pump subunit AcrA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_11525 bepF_3; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_07465 mdtA_2; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_07010 minC; Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D clem_07715 minD; Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D clem_07720 minE; Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D clem_09115 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D clem_09110 mreC; Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D clem_09105 mreD; Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D clem_06210 mrdB; Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D clem_14295 parA; Chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D clem_14300 parB_2; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D clem_02040 parB_1; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D clem_00280 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D clem_03900 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D clem_14285 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D clem_14290 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D clem_09910 xerC_2; Tyrosine recombinase XerC K04763 xerD; integrase/recombinase XerD
D clem_03905 ylxH_1; Flagellum site-determining protein YlxH K03593 mrp; ATP-binding protein involved in chromosome partitioning
D clem_13740 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:lcd03400]
D clem_13000 ogt; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D clem_07620 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D clem_05320 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D clem_05045 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D clem_14250 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D clem_06745 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D clem_12825 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D clem_11190 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D clem_05815 Uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D clem_14755 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D clem_01795 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D clem_02220 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D clem_02225 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D clem_06725 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D clem_08965 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D clem_14125 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D clem_13115 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D clem_14600 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D clem_10745 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D clem_11105 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D clem_13485 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D clem_13480 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D clem_13330 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D clem_11455 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D clem_04715 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D clem_03960 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D clem_02605 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D clem_06835 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D clem_04735 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D clem_11820 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D clem_08935 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D clem_14870 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D clem_10680 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D clem_06055 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D clem_06340 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D clem_06270 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_00860 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D clem_12925 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D clem_12615 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08685 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_13315 ssb_3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_02280 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D clem_03975 recombinase A K03553 recA; recombination protein RecA
D clem_05510 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D clem_07085 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D clem_05505 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D clem_14170 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D clem_11815 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
D clem_14865 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D clem_11740 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D clem_04630 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D clem_12935 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D clem_01205 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D clem_07925 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D clem_10570 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D clem_13165 AAA-like domain protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D clem_01135 ykoV; putative DNA repair protein YkoV K10979 ku; DNA end-binding protein Ku
D clem_10160 ykoU; putative ATP-dependent DNA ligase YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D clem_10165 Putative DNA ligase-like protein/MT0965 K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D clem_05760 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D clem_14860 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D clem_01980 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D clem_05205 Eukaryotic DNA topoisomerase I, catalytic core K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D clem_11365 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D clem_06190 fis_3; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_01760 fis_1; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_04370 fis_2; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D clem_02545 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D clem_00640 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D clem_08800 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D clem_00535 dinB_1; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D clem_08715 dinB_2; DNA polymerase IV K03502 umuC; DNA polymerase V
D clem_08720 lexA; LexA repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D clem_03980 recX; Regulatory protein RecX K03565 recX; regulatory protein
D clem_05230 polX; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X)
D clem_01270 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D clem_10420 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D clem_04740 dbpA; ATP-dependent RNA helicase DbpA K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D clem_04180 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D clem_04175 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:lcd03029]
D clem_02570 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D clem_01525 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D clem_02520 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D clem_07665 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D clem_13460 tufA_1; Elongation factor Tu K02358 tuf; elongation factor Tu
D clem_13525 tufA_2; Elongation factor Tu K02358 tuf; elongation factor Tu
D clem_13465 fusA; Elongation factor G K02355 fusA; elongation factor G
D clem_04625 era; GTPase Era K03595 era; GTPase
D clem_02340 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D clem_06065 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D clem_06825 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D clem_11715 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D clem_07800 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D clem_07805 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D clem_07795 gatC; Glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D clem_03150 prfA_1; Peptide chain release factor 1 K23498 COXPD7; peptide chain release factor
D clem_14085 hypothetical protein K23499 RMND1; required for meiotic nuclear division protein 1
D clem_12615 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_08685 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_13315 ssb_3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D clem_11955 bamA; Outer membrane protein assembly factor BamA precursor K07277 SAM50; outer membrane protein insertion porin family
D clem_11665 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D clem_11670 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D clem_03850 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D clem_03845 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D clem_11660 dnaJ_2; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D clem_09270 blh; Beta-lactamase hydrolase-like protein K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18]
D clem_04360 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D clem_00575 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D clem_04365 iscA; Iron-binding protein IscA K22063 ISCA1; iron-sulfur cluster assembly 1
D clem_03905 ylxH_1; Flagellum site-determining protein YlxH K03593 mrp; ATP-binding protein involved in chromosome partitioning
D clem_03370 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D clem_14365 ctaG; Cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D clem_03365 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D clem_00055 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D clem_03355 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D clem_03375 hypothetical protein K07152 SCO1; protein SCO1
D clem_06170 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:lcd02000]
D clem_10945 msbA_2; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D clem_00225 apxIB; Toxin RTX-I translocation ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D clem_12270 Putative multidrug export ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D clem_12580 putative ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D clem_08920 prsD; Type I secretion system ATP-binding protein PrsD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D clem_11435 uup; ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D clem_09025 potD; Spermidine/putrescine-binding periplasmic protein precursor K11069 potD; spermidine/putrescine transport system substrate-binding protein
D clem_09020 ydcV; Inner membrane ABC transporter permease protein YdcV K11070 potC; spermidine/putrescine transport system permease protein
D clem_09015 potB; Spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D clem_09010 potA; Spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D clem_13710 cmpB; Bicarbonate transport system permease protein CmpB K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D clem_13715 cmpD; Bicarbonate transport ATP-binding protein CmpD K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D clem_09690 ugpB; sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D clem_07755 ugpA; sn-glycerol-3-phosphate transport system permease protein UgpA K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D clem_07750 lacG; Lactose transport system permease protein LacG K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D clem_07745 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D clem_04815 mlaD; putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D clem_02890 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D clem_04810 mlaE_2; putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D clem_02900 mlaE_1; putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D clem_04805 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D clem_02895 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D clem_02885 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D clem_04820 mlaC; putative phospholipid-binding protein MlaC precursor K07323 mlaC; phospholipid transport system substrate-binding protein
D clem_04825 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein
D clem_11050 metQ; D-methionine-binding lipoprotein MetQ precursor K02073 metQ; D-methionine transport system substrate-binding protein
D clem_11045 metI; D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D clem_11040 metN; Methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D clem_03815 artI; Putative ABC transporter arginine-binding protein 2 precursor K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D clem_08960 hbpA; Heme-binding protein A precursor K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D clem_08955 oppB; Oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D clem_08950 gsiD; Glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D clem_10915 gsiA; Glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D clem_09290 kpsM; Polysialic acid transport protein KpsM K09690 wzm; homopolymeric O-antigen transport system permease protein
D clem_09285 tagH; Teichoic acids export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D clem_10670 lptF; Lipopolysaccharide export system permease protein LptF K07091 lptF; lipopolysaccharide export system permease protein
D clem_10665 lptG; Lipopolysaccharide export system permease protein LptG K11720 lptG; lipopolysaccharide export system permease protein
D clem_04775 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D clem_00435 lolC; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D clem_09770 lolE; Lipoprotein-releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D clem_00440 lolD_1; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D clem_09765 lolD_3; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D clem_08845 ccmC; Heme exporter protein C K02195 ccmC; heme exporter protein C
D clem_08850 ccmB; Heme exporter protein B K02194 ccmB; heme exporter protein B
D clem_08855 ccmA; Cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D clem_02740 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D clem_02735 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D clem_13040 yadH; Inner membrane transport permease YadH K01992 ABC-2.P; ABC-2 type transport system permease protein
D clem_12880 ybhR; Inner membrane transport permease YbhR K01992 ABC-2.P; ABC-2 type transport system permease protein
D clem_12570 yxlF; putative ABC transporter ATP-binding protein YxlF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D clem_12885 ybhF; putative ABC transporter ATP-binding protein YbhF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D clem_13035 drrA; Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D clem_14535 macB_1; Macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D clem_05455 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D clem_14540 macB_2; Macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D clem_05450 lolD_2; Lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D clem_10615 sufC; putative ATP-dependent transporter SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D clem_12280 proP_5; Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D clem_08295 proP_3; Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D clem_04190 proP_2; Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D clem_11575 proP_4; Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D clem_09200 muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D clem_09995 bcr_3; Bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D clem_09215 bcr_2; Bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D clem_08230 bcr_1; Bicyclomycin resistance protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D clem_10630 mdfA; Multidrug transporter MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D clem_10970 emrB; Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D clem_09680 Major Facilitator Superfamily protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D clem_05040 enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D clem_10045 ltaA; putative glycolipid permease LtaA K06902 UMF1; MFS transporter, UMF1 family
D clem_14215 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D clem_12075 crh; HPr-like protein Crh K08485 ptsO; phosphocarrier protein NPr
D clem_12065 ptsN; Nitrogen regulatory protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D clem_10905 aqpZ; Aquaporin Z K06188 aqpZ; aquaporin Z
D clem_04575 gstA; Glutathione S-transferase GstA K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D clem_02580 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
D clem_00705 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D clem_00710 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D clem_00715 Tetratricopeptide repeat protein K07114 yfbK; Ca-activated chloride channel homolog
D clem_04685 yccA; Modulator of FtsH protease YccA K19416 yccA; modulator of FtsH protease
D clem_03995 mscL; Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D clem_06830 mscM; Miniconductance mechanosensitive channel MscM precursor K05802 mscK; potassium-dependent mechanosensitive channel
D clem_01215 mscS_1; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D clem_11860 mscS_2; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D clem_10475 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D clem_04105 pomA; Chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D clem_10480 motB_2; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_04110 motB_1; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_00595 pal_1; Peptidoglycan-associated lipoprotein precursor K21218 motY; sodium-type flagellar protein MotY
D clem_07075 exbB; Biopolymer transport protein ExbB K03562 tolQ; biopolymer transport protein TolQ
D clem_07070 exbD; Biopolymer transport protein ExbD K03560 tolR; biopolymer transport protein TolR
D clem_13070 corA; Magnesium transport protein CorA K03284 corA; magnesium transporter
D clem_11930 crcB; Putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D clem_14720 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D clem_12965 corC_2; Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family
D clem_13870 OmpA-like transmembrane domain protein K16079 omp31; outer membrane immunogenic protein
D clem_03670 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 fadL; long-chain fatty acid transport protein
D clem_03930 47 kDa outer membrane protein precursor K06076 fadL; long-chain fatty acid transport protein
D clem_12180 czcC_2; Cobalt-zinc-cadmium resistance protein CzcC precursor K15725 czcC; outer membrane protein, heavy metal efflux system
D clem_08465 czcC_1; Cobalt-zinc-cadmium resistance protein CzcC precursor K15725 czcC; outer membrane protein, heavy metal efflux system
D clem_08515 tolC_1; Outer membrane protein TolC precursor K15725 czcC; outer membrane protein, heavy metal efflux system
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
D clem_11955 bamA; Outer membrane protein assembly factor BamA precursor K07277 SAM50; outer membrane protein insertion porin family
D clem_06445 bamB_1; Outer membrane protein assembly factor BamB precursor K17713 bamB; outer membrane protein assembly factor BamB
D clem_07930 bamD; Outer membrane protein assembly factor BamD precursor K05807 bamD; outer membrane protein assembly factor BamD
D clem_13175 bamE; Outer membrane protein assembly factor BamE precursor K06186 bamE; outer membrane protein assembly factor BamE
D clem_03955 tamA; Translocation and assembly module TamA precursor K07278 tamA; translocation and assembly module TamA
D clem_03950 tamB; Translocation and assembly module TamB K09800 tamB; translocation and assembly module TamB
D clem_04780 lptA; Lipopolysaccharide export system protein LptA precursor K09774 lptA; lipopolysaccharide export system protein LptA
D clem_04785 Lipopolysaccharide-assembly, LptC-related K11719 lptC; lipopolysaccharide export system protein LptC
D clem_13590 lptD; LPS-assembly protein LptD precursor K04744 lptD; LPS-assembly protein
D clem_06060 LPS-assembly lipoprotein RlpB K03643 lptE; LPS-assembly lipoprotein
D clem_05910 corC_1; Magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D clem_10390 gadC_3; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D clem_01585 gadC_1; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D clem_07590 gadC_2; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D clem_02385 czcD; Cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D clem_10715 ZIP Zinc transporter K07238 TC.ZIP; zinc transporter, ZIP family
D clem_08505 cusA; Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D clem_03735 bepE_1; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_04585 acrB; Multidrug efflux pump subunit AcrB K18138 acrB; multidrug efflux pump
D clem_11530 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_07470 mdtC; Multidrug resistance protein MdtC K18138 acrB; multidrug efflux pump
D clem_06935 eamA; putative amino-acid metabolite efflux pump K15268 eamA; O-acetylserine/cysteine efflux transporter
D clem_05035 yrbG; Inner membrane protein YrbG K07301 yrbG; cation:H+ antiporter
D clem_10000 nhaA; Na(+)/H(+) antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D clem_01570 kefC_1; Glutathione-regulated potassium-efflux system protein KefC K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D clem_09145 nhaS3; High-affinity Na(+)/H(+) antiporter NhaS3 K26730 napA; Na+:H+ antiporter
D clem_13210 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D clem_13205 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D clem_05245 xanQ; Xanthine permease XanQ K16345 xanP; xanthine permease XanP
D clem_14090 purP; putative adenine permease PurP K06901 pbuG; adenine/guanine/hypoxanthine permease
D clem_02290 tyrP_1; Tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D clem_02295 tyrP_2; Tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D clem_07385 sdaC; Serine transporter K03837 sdaC; serine transporter
D clem_07775 clcA; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D clem_01240 clcB; Voltage-gated ClC-type chloride channel ClcB K03281 clcA; chloride channel protein, CIC family
D clem_13620 Chromate transporter K07240 chrA; chromate transporter
D clem_02200 dauA_1; C4-dicarboxylic acid transporter DauA K03321 TC.SULP; sulfate permease, SulP family
D clem_06910 bicA; Bicarbonate transporter BicA K03321 TC.SULP; sulfate permease, SulP family
D clem_05960 mrpA; Na(+)/H(+) antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D clem_05965 mrpB; Na(+)/H(+) antiporter subunit B K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D clem_05970 mnhC1; Na(+)/H(+) antiporter subunit C1 K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D clem_05975 mrpD; Na(+)/H(+) antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D clem_05980 mrpE; Na(+)/H(+) antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D clem_05985 mnhF1; Na(+)/H(+) antiporter subunit F1 K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D clem_05990 mrpG; Na(+)/H(+) antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D clem_12260 murJ_2; putative peptidoglycan biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D clem_10710 murJ_1; putative peptidoglycan biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D clem_02315 potassium transport protein Kup K03549 kup; KUP system potassium uptake protein
D clem_14395 argO; Arginine exporter protein ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO
D clem_10020 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D clem_14500 yhhQ; Inner membrane protein YhhQ K09125 yhhQ; queuosine precursor transporter
D clem_01890 ftsW; Lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D clem_02645 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D clem_02880 pal_2; Peptidoglycan-associated lipoprotein precursor K03640 pal; peptidoglycan-associated lipoprotein
D clem_07065 cell envelope integrity inner membrane protein TolA K03646 tolA; colicin import membrane protein
D clem_07060 translocation protein TolB K03641 tolB; TolB protein
D clem_10965 emrK; putative multidrug resistance protein EmrK K03543 emrA; membrane fusion protein, multidrug efflux system
D clem_08925 prsE; Type I secretion system membrane fusion protein PrsE K12537 hasE; membrane fusion protein, type I secretion system
D clem_08460 czcB_1; Cobalt-zinc-cadmium resistance protein CzcB K15727 czcB; membrane fusion protein, heavy metal efflux system
D clem_08510 cusB_1; Cation efflux system protein CusB precursor K07798 cusB; membrane fusion protein, copper/silver efflux system
D clem_00220 cvaA; Colicin V secretion protein CvaA K13408 cvaA; membrane fusion protein
D clem_00430 macA_1; Macrolide export protein MacA K18302 mexJ; membrane fusion protein, multidrug efflux system
D clem_03740 mdtA_1; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_04580 acrA; Multidrug efflux pump subunit AcrA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_11525 bepF_3; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_07465 mdtA_2; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_04565 pnuC; Nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D clem_01645 feoA; Ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D clem_01650 feoB; Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D clem_08835 ccmF; Cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:lcd02044]
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
D clem_08920 prsD; Type I secretion system ATP-binding protein PrsD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D clem_08925 prsE; Type I secretion system membrane fusion protein PrsE K12537 hasE; membrane fusion protein, type I secretion system
D clem_00220 cvaA; Colicin V secretion protein CvaA K13408 cvaA; membrane fusion protein
D clem_00225 apxIB; Toxin RTX-I translocation ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D clem_05025 hypothetical protein K02452 gspC; general secretion pathway protein C
D clem_05630 gspD; Putative type II secretion system protein D precursor K02453 gspD; general secretion pathway protein D
D clem_05625 epsE_1; Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D clem_06145 epsF_1; Type II secretion system protein F K02455 gspF; general secretion pathway protein F
D clem_06140 epsG; Type II secretion system protein G precursor K02456 gspG; general secretion pathway protein G
D clem_00095 pulG; Type II secretion system protein G precursor K02456 gspG; general secretion pathway protein G
D clem_06135 gspH; Putative type II secretion system protein H precursor K02457 gspH; general secretion pathway protein H
D clem_06130 Bacterial type II secretion system protein I/J K02458 gspI; general secretion pathway protein I
D clem_06125 xcpW; Type II secretion system protein J precursor K02459 gspJ; general secretion pathway protein J
D clem_06120 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D clem_10240 GspL-like protein K02461 gspL; general secretion pathway protein L
D clem_10245 epsM_2; Type II secretion system protein M K02462 gspM; general secretion pathway protein M
D clem_06590 outO; Type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D clem_10370 pilE1; Fimbrial protein precursor K02650 pilA; type IV pilus assembly protein PilA
D clem_06600 epsE_2; Type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D clem_06595 epsF_2; Type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D clem_04615 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE
D clem_06425 photosystem I assembly protein Ycf3 K02656 pilF; type IV pilus assembly protein PilF
D clem_04525 Competence protein A K02662 pilM; type IV pilus assembly protein PilM
D clem_04530 Fimbrial assembly protein (PilN) K02663 pilN; type IV pilus assembly protein PilN
D clem_04535 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO
D clem_04540 Pilus assembly protein, PilP K02665 pilP; type IV pilus assembly protein PilP
D clem_04545 pilQ; Type IV pilus biogenesis and competence protein PilQ precursor K02666 pilQ; type IV pilus assembly protein PilQ
D clem_11500 YGGT family protein K02221 yggT; YggT family protein
D clem_09120 comEA; ComE operon protein 1 K02237 comEA; competence protein ComEA
D clem_08750 ComEC family competence protein K02238 comEC; competence protein ComEC
D clem_04080 flhA; Flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D clem_04075 flhB_3; Flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D clem_02060 flhB_1; Flagellar biosynthetic protein FlhB K04061 flhB2; flagellar biosynthesis protein
D clem_04290 fliF; Flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D clem_04300 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D clem_04305 fliI; Flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D clem_04045 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D clem_04050 fliO; Flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D clem_04055 fliP; Flagellar biosynthetic protein FliP precursor K02419 fliP; flagellar biosynthesis protein FliP
D clem_04060 fliQ; Flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D clem_04065 fliR; Flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D clem_08655 Type IV secretion-system coupling protein DNA-binding domain protein K12071 traD; conjugal transfer pilus assembly protein TraD
D clem_12495 Type IV secretion-system coupling protein DNA-binding domain protein K12071 traD; conjugal transfer pilus assembly protein TraD
D clem_02700 pilT; Twitching mobility protein K12203 dotB; defect in organelle trafficking protein DotB [EC:7.2.4.8]
D clem_02705 hypothetical protein K12204 dotC; defect in organelle trafficking protein DotC
D clem_02710 hypothetical protein K12205 dotD; defect in organelle trafficking protein DotD
D clem_03565 AAA-like domain protein K12206 icmB; intracellular multiplication protein IcmB [EC:7.2.4.8]
D clem_03550 hypothetical protein K12208 icmD; intracellular multiplication protein IcmD
D clem_03535 spkB; Serine/threonine-protein kinase B K12209 icmE; intracellular multiplication protein IcmE
D clem_03585 Intracellular multiplication and macrophage-killing K12210 icmF; intracellular multiplication protein IcmF
D clem_03540 hypothetical protein K12211 icmG; intracellular multiplication protein IcmG
D clem_03555 hypothetical protein K12212 icmJ; intracellular multiplication protein IcmJ
D clem_03530 hypothetical protein K12213 icmK; intracellular multiplication protein IcmK
D clem_03525 Macrophage killing protein with similarity to conjugation protein K12214 icmL; intracellular multiplication protein IcmL
D clem_03510 AAA-like domain protein K12217 icmO; intracellular multiplication protein IcmO [EC:7.2.4.8]
D clem_03505 hypothetical protein K12218 icmP; intracellular multiplication protein IcmP
D clem_03500 Dot/Icm secretion system protein (dot_icm_IcmQ) K12219 icmQ; intracellular multiplication protein IcmQ
D clem_03485 hypothetical protein K12222 icmT; intracellular multiplication protein IcmT
D clem_02680 hypothetical protein K12223 icmV; intracellular multiplication protein IcmV
D clem_02675 hypothetical protein K12224 icmW; intracellular multiplication protein IcmW
D clem_02670 hypothetical protein K12225 icmX; intracellular multiplication protein IcmX
D clem_03590 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D clem_12360 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_06740 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D clem_11210 secB; Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D clem_10095 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D clem_13515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D clem_10090 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D clem_01430 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D clem_13350 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D clem_12975 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D clem_02730 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D clem_10100 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D clem_00055 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D clem_14430 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D clem_14435 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D clem_00385 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:lcd02042]
D clem_14720 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D clem_12965 corC_2; Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:lcd02022]
D clem_12315 rstB; Sensor protein RstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D clem_12340 rstA; Transcriptional regulatory protein RstA K07661 rstA; two-component system, OmpR family, response regulator RstA
D clem_05900 cpxA; Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D clem_05905 ompR_1; Transcriptional regulatory protein OmpR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D clem_05515 qseC; Sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D clem_05520 qseB; Transcriptional regulatory protein QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D clem_03575 kdpD; Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D clem_04920 arcB_1; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D clem_08145 arcB_3; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D clem_12960 ompR_2; Transcriptional regulatory protein OmpR K02483 K02483; two-component system, OmpR family, response regulator
D clem_10355 barA; Signal transduction histidine-protein kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D clem_10750 uvrY; Response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D clem_10285 bvgS; Virulence sensor protein BvgS precursor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D clem_01095 fixL; Sensor protein FixL K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D clem_04275 zraS; Sensor protein ZraS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D clem_04280 qseF; Transcriptional regulatory protein QseF K10943 flrC; two-component system, response regulator FlrC
C 02035 Bacterial motility proteins [BR:lcd02035]
D clem_04300 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D clem_04305 fliI; Flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D clem_04310 flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ
D clem_04050 fliO; Flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D clem_04055 fliP; Flagellar biosynthetic protein FliP precursor K02419 fliP; flagellar biosynthesis protein FliP
D clem_04060 fliQ; Flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D clem_04065 fliR; Flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D clem_04080 flhA; Flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D clem_04075 flhB_3; Flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D clem_04295 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D clem_04040 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D clem_04045 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D clem_04290 fliF; Flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D clem_05140 flgI; Flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D clem_07820 flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D clem_05135 flgH; Flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D clem_04285 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D clem_07575 fliK; Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D clem_05105 flgB; Flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D clem_05110 flgC; Flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D clem_05115 flgD; Basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D clem_05125 flgF; Flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D clem_05130 flgG; Flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D clem_05145 flgJ; Peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D clem_05120 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D clem_05150 flgK; Flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D clem_05155 flgL; Flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D clem_07830 FlgN protein K02399 flgN; flagellar biosynthesis protein FlgN
D clem_00595 pal_1; Peptidoglycan-associated lipoprotein precursor K21218 motY; sodium-type flagellar protein MotY
D clem_06020 fliC; B-type flagellin K02406 fliC; flagellin
D clem_06010 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D clem_06005 fliS; Flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D clem_04100 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D clem_10475 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D clem_04105 pomA; Chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D clem_10480 motB_2; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_04110 motB_1; Motility protein B K02557 motB; chemotaxis protein MotB
D clem_08910 zraR; Transcriptional regulatory protein ZraR K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D clem_04275 zraS; Sensor protein ZraS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D clem_04280 qseF; Transcriptional regulatory protein QseF K10943 flrC; two-component system, response regulator FlrC
D clem_07825 Anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D clem_04085 flhF; Flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D clem_04095 ylxH_2; Flagellum site-determining protein YlxH K04562 flhG; flagellar biosynthesis protein FlhG
D clem_10370 pilE1; Fimbrial protein precursor K02650 pilA; type IV pilus assembly protein PilA
D clem_06600 epsE_2; Type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D clem_06595 epsF_2; Type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D clem_06590 outO; Type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D clem_06425 photosystem I assembly protein Ycf3 K02656 pilF; type IV pilus assembly protein PilF
D clem_04545 pilQ; Type IV pilus biogenesis and competence protein PilQ precursor K02666 pilQ; type IV pilus assembly protein PilQ
D clem_04540 Pilus assembly protein, PilP K02665 pilP; type IV pilus assembly protein PilP
D clem_04535 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO
D clem_04530 Fimbrial assembly protein (PilN) K02663 pilN; type IV pilus assembly protein PilN
D clem_04525 Competence protein A K02662 pilM; type IV pilus assembly protein PilM
D clem_04615 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:lcd04812]
D clem_09115 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D clem_01920 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D clem_01915 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D clem_07010 minC; Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D clem_07715 minD; Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D clem_07720 minE; Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D clem_14295 parA; Chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D clem_14300 parB_2; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D clem_02040 parB_1; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:lcd04147]
D clem_06170 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D clem_12100 fda; Fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D clem_02800 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D clem_13805 gap; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D clem_13800 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D clem_13795 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D clem_00580 tsaA; putative peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D clem_03850 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D clem_11665 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D clem_09500 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D clem_07700 guaB_2; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D clem_00930 guaB_1; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D clem_13460 tufA_1; Elongation factor Tu K02358 tuf; elongation factor Tu
D clem_13525 tufA_2; Elongation factor Tu K02358 tuf; elongation factor Tu
D clem_10535 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D clem_01555 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D clem_07015 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_04705 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D clem_10485 fadI; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_10985 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_07195 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D clem_11645 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D clem_05725 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D clem_04985 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D clem_05740 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D clem_10180 puuA; Gamma-glutamylputrescine synthetase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_06150 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D clem_03945 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D clem_09715 lly; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D clem_10080 Putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D clem_12155 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D clem_05695 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D clem_04495 etfA; Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D clem_07325 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D clem_01425 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:lcd02048]
D clem_02280 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D clem_00400 mazF; mRNA interferase MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D clem_04260 relE; mRNA interferase RelE K06218 relE; mRNA interferase RelE/StbE
D clem_12710 Ribbon-helix-helix protein, copG family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D clem_04255 yafN; Antitoxin YafN K18923 stbD; antitoxin StbD
D clem_10015 hipA; Serine/threonine-protein kinase HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D clem_10010 hipB; Antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D clem_09000 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D clem_00870 ybaQ; putative HTH-type transcriptional regulator YbaQ K21498 higA-1; antitoxin HigA-1
D clem_07785 fitB; Toxin FitB K07062 fitB; toxin FitB [EC:3.1.-.-]
D clem_01920 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D clem_09115 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D clem_00280 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D clem_03900 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D clem_10350 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D clem_07095 cptB; Antitoxin CptB K09159 cptB; antitoxin CptB
D clem_04360 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors [BR:lcd04054]
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:lcd04090]
C 01504 Antimicrobial resistance genes [BR:lcd01504]
D clem_03070 Aminoglycoside/hydroxyurea antibiotic resistance kinase K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D clem_09680 Major Facilitator Superfamily protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D clem_05040 enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D clem_10630 mdfA; Multidrug transporter MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D clem_08120 bla; Beta-lactamase Toho-1 precursor K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D clem_03665 hypothetical protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D clem_03740 mdtA_1; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_04580 acrA; Multidrug efflux pump subunit AcrA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_11525 bepF_3; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_07465 mdtA_2; Multidrug resistance protein MdtA precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D clem_03735 bepE_1; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_04585 acrB; Multidrug efflux pump subunit AcrB K18138 acrB; multidrug efflux pump
D clem_11530 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D clem_07470 mdtC; Multidrug resistance protein MdtC K18138 acrB; multidrug efflux pump
D clem_00430 macA_1; Macrolide export protein MacA K18302 mexJ; membrane fusion protein, multidrug efflux system
D clem_10880 tolC_2; Outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D clem_14550 Outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:lcd00537]
D clem_07255 treA; Periplasmic trehalase precursor K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:lcd03100]
D clem_10300 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D clem_12915 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D clem_02345 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D clem_07205 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_02940 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_05160 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_11400 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D clem_14610 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D clem_11355 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D clem_11245 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D clem_01770 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D clem_10290 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D clem_10295 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D clem_13535 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D clem_11250 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D clem_11395 tRNA-His K14226 tRNA-His; tRNA His
D clem_13560 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D clem_00325 tRNA-Ser K14228 tRNA-Leu; tRNA Leu
D clem_09195 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_11240 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_11390 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_01435 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D clem_02935 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D clem_02930 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D clem_12250 tRNA-Met K14230 tRNA-Met; tRNA Met
D clem_01510 tRNA-Met K14230 tRNA-Met; tRNA Met
D clem_05635 tRNA-Met K14230 tRNA-Met; tRNA Met
D clem_09800 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D clem_11405 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D clem_11910 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D clem_12685 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D clem_04935 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D clem_07200 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D clem_07935 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D clem_08740 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D clem_13545 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D clem_13530 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D clem_13520 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D clem_13540 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D clem_02510 tRNA-Val K14237 tRNA-Val; tRNA Val
D clem_11360 tRNA-Val K14237 tRNA-Val; tRNA Val
D clem_14890 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D clem_14875 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D clem_13830 ssrA; transfer-messenger RNA, SsrA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D clem_03690 yueD; Benzil reductase ((S)-benzoin forming) K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D clem_01040 dkgB; 2,5-diketo-D-gluconic acid reductase B K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D clem_04035 dprE1_1; putative decaprenylphosphoryl-beta-D-ribose oxidase K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]
D clem_06255 calB; Coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D clem_03625 fadH; 2,4-dienoyl-CoA reductase [NADPH] K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D clem_05250 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D clem_14455 msrA3; Peptide methionine sulfoxide reductase MsrA 3 K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D clem_10430 yqjG; Glutathionyl-hydroquinone reductase YqjG K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D clem_00940 bcp; Putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D clem_10170 osmC; Peroxiredoxin OsmC K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D clem_03610 ahpD; Alkyl hydroperoxide reductase AhpD K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D clem_03605 Alkyl hydroperoxide reductase subunit C K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D clem_14810 yhhW; Quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D clem_02210 arsC; Arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D clem_10875 pcm; Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D clem_07530 cfa; Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D clem_12665 tehB; putative S-adenosyl-L-methionine-dependent methyltransferase TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D clem_12275 Acetyltransferase (GNAT) family protein K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D clem_06365 nat; Arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D clem_06070 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D clem_04210 aat; Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D clem_14205 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D clem_06565 ppsR; Phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D clem_03820 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D clem_00920 Thermostable monoacylglycerol lipase K03928 yvaK; carboxylesterase [EC:3.1.1.1]
D clem_07080 ybgC; Acyl-CoA thioester hydrolase YbgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D clem_14175 acyl-CoA thioesterase YbgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D clem_05930 hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D clem_08815 hypothetical protein K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3 [EC:3.1.4.-]
D clem_06345 ycfH; putative deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D clem_03715 Glycosyl hydrolase family 81 K01180 E3.2.1.6; endo-1,3(4)-beta-glucanase [EC:3.2.1.6]
D clem_14110 D-alanyl-D-alanine carboxypeptidase precursor K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D clem_02820 D-alanyl-D-alanine carboxypeptidase precursor K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D clem_01725 def_1; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D clem_08290 def_3; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D clem_01995 def_2; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D clem_11580 def_4; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D clem_11630 pgdA_3; Peptidoglycan-N-acetylglucosamine deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D clem_04000 pgdA_2; Peptidoglycan-N-acetylglucosamine deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D clem_04690 2-oxoglutaramate amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D clem_07490 Polysaccharide deacetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D clem_01360 yabJ_1; Enamine/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D clem_00690 ATPase family associated with various cellular activities (AAA) K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D clem_02590 nnr; Bifunctional NAD(P)H-hydrate repair enzyme Nnr K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D clem_01105 cphA_1; Cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D clem_04325 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D clem_14255 rnfB; Electron transport complex protein rnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D clem_11705 silP_2; Silver exporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D clem_08520 Calcium-transporting ATPase 1 K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D clem_10425 Ferredoxin 1 K05524 fdxA; ferredoxin
D clem_10600 nifU; NifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D clem_04490 etfB; Electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D clem_08805 hypothetical protein K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D clem_05335 putative sulfate transport protein CysZ K06203 cysZ; CysZ protein
D clem_10055 hypothetical protein K18802 DUG3; glutamine amidotransferase
D clem_01145 egtC; Amidohydrolase EgtC K18802 DUG3; glutamine amidotransferase
D clem_11490 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D clem_05785 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D clem_05790 tetratricopeptide repeat protein K19804 lapB; lipopolysaccharide assembly protein B
D clem_06880 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D clem_02430 putative protoheme IX biogenesis protein K02498 hemY; HemY protein
D clem_14425 ubiB; putative protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D clem_14420 SCP-2 sterol transfer family protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D clem_03440 Membrane fusogenic activity K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D clem_01930 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 K18586 COQ4; ubiquinone biosynthesis protein COQ4
C 99988 Secondary metabolism
C 99999 Others
D clem_13190 estB; Carboxylesterase 2 K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D clem_14650 cspA_3; Major cold shock protein CspA K03704 cspA; cold shock protein
D clem_03400 cspD; Cold shock-like protein CspD K03704 cspA; cold shock protein
D clem_08310 capB; Cold shock protein CapB K03704 cspA; cold shock protein
D clem_05075 cspA_2; Major cold shock protein CspA K03704 cspA; cold shock protein
D clem_05430 cspV; Cold shock protein CspV K03704 cspA; cold shock protein
D clem_00890 cspA_1; Cold shock-like protein CspA K03704 cspA; cold shock protein
D clem_03445 glnK; Nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2
D clem_01045 rpsA_1; 30S ribosomal protein S1 K06959 tex; protein Tex
C 99974 Translation
D clem_08500 Ribonuclease K07576 K07576; metallo-beta-lactamase family protein
D clem_07450 Beta-lactamase superfamily domain protein K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D clem_09080 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D clem_11385 tig; Trigger factor K03545 tig; trigger factor
D clem_00945 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D clem_03435 comM; Competence protein ComM K07391 comM; magnesium chelatase family protein
D clem_13025 hypothetical protein K07394 K07394; SM-20-related protein
D clem_00615 hypothetical protein K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D clem_12835 hypothetical protein K03630 radC; DNA repair protein RadC
D clem_08995 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D clem_08660 recombination protein F K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D clem_00135 hypothetical protein K07460 yraN; putative endonuclease
D clem_09915 GIY-YIG nuclease superfamily protein K07461 K07461; putative endonuclease
D clem_08980 GIY-YIG nuclease superfamily protein K07461 K07461; putative endonuclease
D clem_02760 GIY-YIG nuclease superfamily protein K07461 K07461; putative endonuclease
D clem_01990 hypothetical protein K04096 smf; DNA processing protein
D clem_04235 rarA; Replication-associated recombination protein A K07478 ycaJ; putative ATPase
D clem_05715 putative 3'-5' exonuclease related to the exonuclease domain of PolB K07501 K07501; 3'-5' exonuclease
D clem_14325 Transposase K07483 K07483; transposase
D clem_00740 Transposase K07483 K07483; transposase
D clem_00770 IS2 repressor TnpA K07483 K07483; transposase
D clem_10695 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D clem_13845 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D clem_09360 Integrase core domain protein K07497 K07497; putative transposase
D clem_00735 Integrase core domain protein K07497 K07497; putative transposase
D clem_00765 IS2 transposase TnpB K07497 K07497; putative transposase
D clem_02965 IS2 transposase TnpB K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D clem_12930 ybaB; Nucleoid-associated protein YbaB K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D clem_04900 rocC; Amino-acid permease RocC K03293 TC.AAT; amino acid transporter, AAT family
D clem_14740 yhdG_3; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D clem_13060 yhdG_1; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D clem_13690 yhdG_2; putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D clem_01350 dtpB; Dipeptide and tripeptide permease B K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D clem_06240 dtpA_1; Dipeptide and tripeptide permease A K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D clem_06515 dtpA_2; Dipeptide and tripeptide permease A K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D clem_14730 pitA_2; Low-affinity inorganic phosphate transporter 1 K03306 TC.PIT; inorganic phosphate transporter, PiT family
D clem_02785 pitA_1; Low-affinity inorganic phosphate transporter 1 K03306 TC.PIT; inorganic phosphate transporter, PiT family
D clem_11615 hypothetical protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D clem_01230 brnQ; Branched-chain amino acid transport system 2 carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D clem_05525 yciB; Intracellular septation protein K06190 ispZ; intracellular septation protein
D clem_02325 spmA; Spore maturation protein A K06373 spmA; spore maturation protein A
D clem_02330 spmB; Spore maturation protein B K06374 spmB; spore maturation protein B
D clem_01300 SpoVR family protein K06415 spoVR; stage V sporulation protein R
D clem_11980 envC; Murein hydrolase activator EnvC precursor K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D clem_05675 regulatory protein AmpE K03807 ampE; AmpE protein
D clem_13790 proQ_2; ProP effector K03607 proQ; ProP effector
D clem_07610 proQ_1; ProP effector K03607 proQ; ProP effector
D clem_04570 hypothetical protein K06149 uspA; universal stress protein A
D clem_10005 hypothetical protein K14055 uspE; universal stress protein E
D clem_01220 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D clem_05920 ybeZ_2; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D clem_00935 ybeZ_1; PhoH-like protein K07175 phoH2; PhoH-like ATPase
D clem_01310 PrkA AAA domain protein K07180 prkA; serine protein kinase
D clem_13655 putative nucleotide-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D clem_04230 lolA; Outer-membrane lipoprotein carrier protein precursor K03634 lolA; outer membrane lipoprotein carrier protein
D clem_01775 lolB; Outer-membrane lipoprotein LolB precursor K02494 lolB; outer membrane lipoprotein LolB
D clem_11120 mlaA; putative phospholipid-binding lipoprotein MlaA precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA
D clem_11950 skp; Chaperone protein Skp precursor K06142 hlpA; outer membrane protein
D clem_05480 nlpD; Murein hydrolase activator NlpD precursor K06194 nlpD; lipoprotein NlpD
D clem_05050 putative assembly protein K07289 asmA; AsmA protein
D clem_12890 macA_2; Macrolide export protein MacA K01993 ABC-2.TX; HlyD family secretion protein
D clem_11735 tqsA_2; AI-2 transport protein TqsA K11744 tqsA; AI-2 transport protein TqsA
D clem_08840 ccmE; Cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D clem_08825 ccmH_2; Cytochrome c-type biogenesis protein CcmH precursor K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D clem_08820 ccmH_1; Cytochrome c-type biogenesis protein CcmH precursor K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D clem_06430 rodZ; Cytoskeleton protein RodZ K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D clem_06040 cvpA; Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D clem_12810 putative acyltransferase K02348 elaA; ElaA protein
D clem_03085 chaB; Cation transport regulator ChaB K06197 chaB; cation transport regulator
D clem_01070 osmY_1; Osmotically-inducible protein Y precursor K04065 osmY; hyperosmotically inducible periplasmic protein
D clem_13130 osmY_4; Osmotically-inducible protein Y precursor K04065 osmY; hyperosmotically inducible periplasmic protein
D clem_02500 periplasmic protein K04065 osmY; hyperosmotically inducible periplasmic protein
D clem_03295 osmY_2; Osmotically-inducible protein Y precursor K04065 osmY; hyperosmotically inducible periplasmic protein
D clem_12650 glbN; Group 1 truncated hemoglobin GlbN K06886 glbN; hemoglobin
D clem_08890 ydfJ; Membrane protein YdfJ K06994 K06994; putative drug exporter of the RND superfamily
D clem_05805 Patatin-like phospholipase K07001 K07001; NTE family protein
D clem_01340 Patatin-like phospholipase K07001 K07001; NTE family protein
D clem_02035 Patatin-like phospholipase K07001 K07001; NTE family protein
D clem_02085 Patatin-like phospholipase K07001 K07001; NTE family protein
D clem_11790 Patatin phospholipase K07001 K07001; NTE family protein
D clem_07420 hypothetical protein K07001 K07001; NTE family protein
D clem_06280 erpA; Iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D clem_10620 sufB; FeS cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D clem_10610 sufD; FeS cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D clem_11865 hypothetical protein K07038 K07038; inner membrane protein
D clem_02205 hypothetical protein K07058 K07058; membrane protein
D clem_07460 ribonuclease BN/unknown domain fusion protein K07058 K07058; membrane protein
D clem_07390 Putative phosphoribosyl transferase/MT0597 K07100 K07100; putative phosphoribosyl transferase
D clem_00175 putative rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
D clem_06230 Glyoxalase-like domain protein K04750 phnB; PhnB protein
D clem_03120 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) K02351 K02351; putative membrane protein
D clem_13085 LemA family protein K03744 lemA; LemA protein
D clem_06035 rare lipoprotein A K03749 dedD; DedD protein
D clem_04560 hypothetical protein K03112 damX; DamX protein
D clem_06760 gbpA; GlcNAc-binding protein A precursor K03933 cpbD; chitin-binding protein
D clem_04250 yqjA; Inner membrane protein YqjA K03975 dedA; membrane-associated protein
D clem_05235 hypothetical protein K08995 K08995; putative membrane protein
D clem_10320 hypothetical protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D clem_02840 Ankyrin repeats (3 copies) K06867 K06867; uncharacterized protein
D clem_11485 Ankyrin repeats (3 copies) K06867 K06867; uncharacterized protein
D clem_05310 hypothetical protein K06888 K06888; uncharacterized protein
D clem_00655 Alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D clem_14035 CoA binding domain protein K06929 K06929; uncharacterized protein
D clem_03385 aspartoacylase K06987 K06987; uncharacterized protein
D clem_14005 Succinylglutamate desuccinylase / Aspartoacylase family protein K06987 K06987; uncharacterized protein
D clem_08000 Virulence protein K06991 K06991; uncharacterized protein
D clem_10530 27 kDa antigen Cfp30B K06996 K06996; uncharacterized protein
D clem_01625 Alpha/beta hydrolase family protein K07018 K07018; uncharacterized protein
D clem_11685 putative hydrolase K07019 K07019; uncharacterized protein
D clem_10580 Epimerase family protein K07071 K07071; uncharacterized protein
D clem_13770 Sulfite exporter TauE/SafE K07090 K07090; uncharacterized protein
D clem_14210 Sulfite exporter TauE/SafE K07090 K07090; uncharacterized protein
D clem_00130 lpoA; Penicillin-binding protein activator LpoA precursor K07121 K07121; uncharacterized protein
D clem_05810 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K07124 K07124; uncharacterized protein
D clem_06105 hcpD_1; Putative beta-lactamase HcpD precursor K07126 K07126; uncharacterized protein
D clem_08300 hcpD_2; Putative beta-lactamase HcpD precursor K07126 K07126; uncharacterized protein
D clem_00050 yidD; Putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D clem_01835 hypothetical protein K09003 K09003; uncharacterized protein
D clem_12235 Yqey-like protein K09117 K09117; uncharacterized protein
D clem_01870 hypothetical protein K09131 K09131; uncharacterized protein
D clem_03160 hypothetical protein K09137 K09137; uncharacterized protein
D clem_06645 hypothetical protein K09158 K09158; uncharacterized protein
D clem_01100 YqcI/YcgG family protein K09190 K09190; uncharacterized protein
D clem_11785 hypothetical protein K09768 K09768; uncharacterized protein
D clem_01305 hypothetical protein K09786 K09786; uncharacterized protein
D clem_10410 hypothetical protein K09791 K09791; uncharacterized protein
D clem_13180 pasI; Persistence and stress-resistance antitoxin PasI K09801 K09801; uncharacterized protein
D clem_08695 hypothetical protein K09805 K09805; uncharacterized protein
D clem_03235 hypothetical protein K09857 K09857; uncharacterized protein
D clem_03755 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D clem_14580 hypothetical protein K09895 K09895; uncharacterized protein
D clem_10260 hypothetical protein K09922 K09922; uncharacterized protein
D clem_03335 hypothetical protein K09930 K09930; uncharacterized protein
D clem_12595 hypothetical protein K09930 K09930; uncharacterized protein
D clem_12015 hypothetical protein K09937 K09937; uncharacterized protein
D clem_02790 hypothetical protein K07220 K07220; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 24, 2024