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Transfer RNA Biogenesis - Lates calcarifer (barramundi perch)
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D 108876305 LOW QUALITY PROTEIN: ribonucleases P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
D 108880512 ribonuclease P protein subunit p29 isoform X2 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D 108878259 ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D 108891545 ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D 108879130 rpp21; ribonuclease P protein subunit p21 isoform X1 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D 108874781 ribonuclease P protein subunit p14 K14529 RPP14; ribonuclease P protein subunit RPP14 [EC:3.1.26.5]
D 108902167 ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
D 108876967 uncharacterized protein LOC108876967 K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 108881855 rpp25l; ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 108876658 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 108889591 ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
D 108884959 ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D 108878586 LOW QUALITY PROTEIN: zinc phosphodiesterase ELAC protein 1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 108886925 zinc phosphodiesterase ELAC protein 2-like isoform X1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 108873364 LOW QUALITY PROTEIN: zinc phosphodiesterase ELAC protein 2 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 108890272 rnaset2l; ribonuclease T2-like isoform X1 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 108877836 rnaset2; ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 108899385 ptcd1; pentatricopeptide repeat-containing protein 1, mitochondrial K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1
C CCA adding factors
D 108898884 CCA tRNA nucleotidyltransferase 1, mitochondrial isoform X1 K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
D 108890700 tRNA-splicing endonuclease subunit Sen2 K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
D 108902926 tRNA-splicing endonuclease subunit Sen34 isoform X1 K15323 TSEN34; tRNA-splicing endonuclease subunit Sen34 [EC:4.6.1.16]
D 108883256 tRNA-splicing endonuclease subunit Sen15 K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15
D 108888587 LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen54 K15326 TSEN54; tRNA-splicing endonuclease subunit Sen54
C tRNA splicing ligase complex
D 108882416 RNA-splicing ligase RtcB homolog K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D 108901002 lg1h2orf49; ashwin K15432 ASW; ashwin
D 108887609 RNA transcription, translation and transport factor protein K15433 CGI99; RLL motif containing protein 1
D 108900597 RNA transcription, translation and transport factor protein K15433 CGI99; RLL motif containing protein 1
D 108874992 LOW QUALITY PROTEIN: protein FAM98B K15434 FAM98B; protein FAM98B
D 108886378 im:7138535; protein FAM98B K15434 FAM98B; protein FAM98B
D 108896834 ATP-dependent RNA helicase DDX1 K13177 DDX1; ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]
D 108892474 protein archease K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
D 108872565 tRNA 2'-phosphotransferase 1 isoform X1 K10669 TRPT1; 2'-phosphotransferase [EC:2.7.1.160]
B tRNA transport factors
C tRNA export factors
D 108878285 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 108882414 exportin-T K14288 XPOT; exportin-T
D 108895727 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
D 108882517 xpo1a; exportin-1 K14290 XPO1; exportin-1
D 108880393 exportin-5 K14289 XPO5; exportin-5
D 108895022 si:dkey-37o8.1; LOW QUALITY PROTEIN: elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
D 108898915 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 108898922 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
D 108898928 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 108873453 eef1a1a; elongation factor 1-alpha 1a K03231 EEF1A; elongation factor 1-alpha
D 108884517 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
D 108898906 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 108872592 scyl1; N-terminal kinase-like protein isoform X1 K08876 SCYL1; SCY1-like protein 1
D 108879377 LOW QUALITY PROTEIN: N-terminal kinase-like protein K08876 SCYL1; SCY1-like protein 1
D 108880667 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
D 108889045 GTP binding protein 1, like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C tRNA import factors
D 108892407 transportin-3 K15436 TRPO3; transportin-3
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D 108897686 LOW QUALITY PROTEIN: bifunctional glutamate/proline--tRNA ligase-like K14163 EPRS; bifunctional glutamyl/prolyl-tRNA synthetase [EC:6.1.1.17 6.1.1.15]
D 108887216 probable glutamate--tRNA ligase, mitochondrial K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D 108896934 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 108896107 isoleucine--tRNA ligase, mitochondrial isoform X1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 108891047 iars1; isoleucine--tRNA ligase, cytoplasmic isoform X1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 108893533 lars1; leucine--tRNA ligase, cytoplasmic K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 108889663 probable leucine--tRNA ligase, mitochondrial K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 108895370 methionine--tRNA ligase, mitochondrial K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 108884823 mars1; LOW QUALITY PROTEIN: methionine--tRNA ligase, cytoplasmic K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 108889503 qars1; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D 108873503 probable arginine--tRNA ligase, mitochondrial K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 108885349 rars1; arginine--tRNA ligase, cytoplasmic K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 108890615 kars1; lysine--tRNA ligase isoform X1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D 108886894 dars1; LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 108896684 aspartate--tRNA ligase, mitochondrial K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 108892270 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 108893121 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 108888240 aimp1a; aminoacyl tRNA synthase complex-interacting multifunctional protein 1a K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 108879994 aminoacyl tRNA synthase complex-interacting multifunctional protein 2 isoform X1 K15438 AIMP2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2
D 108884008 eukaryotic translation elongation factor 1 epsilon-1 K15439 EEF1E1; eukaryotic translation elongation factor 1 epsilon-1
C Other AARSs
D 108882270 alanine--tRNA ligase, mitochondrial K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 108901892 aars1; alanine--tRNA ligase, cytoplasmic K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 108876203 probable asparagine--tRNA ligase, mitochondrial K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 108901162 nars1; asparagine--tRNA ligase, cytoplasmic isoform X1 K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 108881712 LOW QUALITY PROTEIN: glycine--tRNA ligase-like K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D 108881715 LOW QUALITY PROTEIN: glycine--tRNA ligase-like K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D 108885911 threonine--tRNA ligase 1, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 108897738 tars3; threonine--tRNA ligase 1, cytoplasmic isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 108881104 tars1; threonine--tRNA ligase 1, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 108874208 serine--tRNA ligase, mitochondrial K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 108882680 sars1; serine--tRNA ligase, cytoplasmic K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 108894186 cars1; cysteine--tRNA ligase, cytoplasmic isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 108902553 probable cysteine--tRNA ligase, mitochondrial isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 108880668 vars1; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 108896389 valine--tRNA ligase, mitochondrial isoform X1 K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 108895522 hars; histidine--tRNA ligase isoform X1 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D 108874819 phenylalanine--tRNA ligase, mitochondrial isoform X2 K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 108898694 LOW QUALITY PROTEIN: phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 108888203 phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D 108900379 yars1; tyrosine--tRNA ligase, cytoplasmic K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 108883074 tyrosine--tRNA ligase, mitochondrial K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 108875047 wars1; tryptophan--tRNA ligase, cytoplasmic K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 108877095 tryptophan--tRNA ligase, mitochondrial K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D 108884512 D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 108880123 D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 108901639 LOW QUALITY PROTEIN: D-aminoacyl-tRNA deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 108875903 alanyl-tRNA editing protein Aarsd1 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
C AARS associated factors
D 108896386 tRNA selenocysteine 1-associated protein 1 isoform X1 K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1
D 108897409 LOW QUALITY PROTEIN: histidine triad nucleotide-binding protein 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D 108878467 hint2; histidine triad nucleotide-binding protein 2, mitochondrial isoform X1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D 108888451 histidine triad nucleotide-binding protein 3 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
D 108895669 adenosine 5'-monophosphoramidase HINT3 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
D 108895665 si:dkey-25e12.3; adenosine 5'-monophosphoramidase HINT3 isoform X1 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
D 108901943 tRNA-specific adenosine deaminase 1 K15440 TAD1; tRNA-specific adenosine deaminase 1 [EC:3.5.4.34]
D 108887497 tRNA-specific adenosine deaminase 2 K15441 TAD2; tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
D 108897181 probable inactive tRNA-specific adenosine deaminase-like protein 3 K15442 TAD3; tRNA-specific adenosine deaminase 3
C Dihydorouridine synthases
D 108898508 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1 K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
D 108898514 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
D 108874387 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
D 108872673 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like K05543 DUS2; tRNA-dihydrouridine synthase 2 [EC:1.3.1.91]
D 108879478 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
D 108888402 tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like K05545 DUS4; tRNA-dihydrouridine synthase 4 [EC:1.3.1.90]
C Methylthiotransferase
D 108889181 threonylcarbamoyladenosine tRNA methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D 108880839 tRNA (guanine(26)-N(2))-dimethyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D 108878114 tRNA (uracil-5-)-methyltransferase homolog A isoform X1 K15332 TRMT2A; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
D 108897238 LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase homolog B K15331 TRMT2B; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D 108894540 probable methyltransferase TARBP1 isoform X1 K15333 TRM3; tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34]
D 108900394 LOW QUALITY PROTEIN: RNA cytosine C(5)-methyltransferase NSUN2 K15335 NSUN2; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.203]
D 108887644 tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial K21969 NSUN3; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.-]
D 108896294 tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 isoform X1 K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D 108892561 tRNA (guanine(37)-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D 108883133 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D 108896163 tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial isoform X1 K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D 108896932 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 K03256 TRM6; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
D 108872462 putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase K14864 FTSJ1; tRNA (cytidine32/guanosine34-2'-O)-methyltransferase [EC:2.1.1.205]
D 108898967 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D 108872777 mettl2a; tRNA N(3)-methylcytidine methyltransferase METTL2 K24974 METTL2; tRNA N(3)-methylcytidine methyltransferase METTL2 [EC:2.1.1.-]
D 108889954 tRNA N(3)-methylcytidine methyltransferase METTL6 K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6 [EC:2.1.1.-]
D 108890870 alkylated DNA repair protein alkB homolog 8 K10770 ALKBH8; alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229]
D 108895198 RNA (guanine-9-)-methyltransferase domain-containing protein 2 isoform X2 K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D 108903088 tRNA methyltransferase 10 homolog B K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D 108888460 tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1 K15430 TRM11; tRNA (guanine10-N2)-methyltransferase [EC:2.1.1.214]
D 108874169 tRNA:m(4)X modification enzyme TRM13 homolog K15446 TRM13; tRNA:m4X modification enzyme [EC:2.1.1.225]
D 108879993 LOW QUALITY PROTEIN: probable tRNA (uracil-O(2)-)-methyltransferase K15447 TRM44; tRNASer (uridine44-2'-O)-methyltransferase [EC:2.1.1.211]
D 108897137 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 K15443 TRM82; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
D 108872575 multifunctional methyltransferase subunit TRM112-like protein K15448 TRM112; multifunctional methyltransferase subunit TRM112
D 108874197 tRNA (cytosine(38)-C(5))-methyltransferase K15336 TRDMT1; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204]
D 108898777 trdmt1; tRNA (cytosine(38)-C(5))-methyltransferase K15336 TRDMT1; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204]
D 108873382 tRNA (adenine(37)-N6)-methyltransferase isoform X1 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D 108876212 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X1 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D 108872492 LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 2 homolog K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D 108885344 LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 3 homolog K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D 108902494 tRNA wybutosine-synthesizing protein 4 isoform X1 K15451 PPM2; tRNA wybutosine-synthesizing protein 4 [EC:2.1.1.290 2.3.1.231]
D 108884629 tRNA wybutosine-synthesizing protein 5 K18066 TYW5; tRNA wybutosine-synthesizing protein 5 [EC:1.14.11.42]
D 108880406 pre-miRNA 5'-monophosphate methyltransferase K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase [EC:2.1.1.-]
D 108873554 pre-miRNA 5'-monophosphate methyltransferase K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D 108879301 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D 108901690 LOW QUALITY PROTEIN: tRNA pseudouridine(38/39) synthase K01855 PUS3; tRNA pseudouridine38/39 synthase [EC:5.4.99.45]
D 108876774 probable tRNA pseudouridine synthase 1 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D 108888945 pseudouridylate synthase PUS7L isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 108883084 pseudouridylate synthase 7 homolog isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 108882520 putative tRNA pseudouridine synthase Pus10 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D 108886513 rpusd4; pseudouridylate synthase RPUSD4, mitochondrial K22538 RPUSD4; mitochondrial RNA pseudouridine synthase RPUSD4 [EC:5.4.99.-]
C Thiolation factors
D 108899836 mitochondrial tRNA-specific 2-thiouridylase 1 K21027 TRMU; tRNA-5-taurinomethyluridine 2-sulfurtransferase [EC:2.8.1.14]
D 108878794 cytoplasmic tRNA 2-thiolation protein 1 K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D 108895327 cytoplasmic tRNA 2-thiolation protein 2 isoform X1 K14169 CTU2; cytoplasmic tRNA 2-thiolation protein 2
D 108889778 cysteine desulfurase, mitochondrial K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D 108879290 ubiquitin-related modifier 1 K12161 URM1; ubiquitin related modifier 1
D 108897983 adenylyltransferase and sulfurtransferase MOCS3 K11996 MOCS3; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11]
C KEOPS/EKC complex
D 108877489 EKC/KEOPS complex subunit TP53RK K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D 108888371 tRNA N6-adenosine threonylcarbamoyltransferase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 108897180 LOW QUALITY PROTEIN: tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 108899839 EKC/KEOPS complex subunit TPRKB K15901 TPRKB; EKC/KEOPS complex subunit TPRKB/CGI121
D 108895887 L antigen family member 3-like K15902 LAGE3; EKC/KEOPS complex subunit LAGE3/PCC1
D 127142623 si:dkeyp-55f12.3; uncharacterized protein si:dkeyp-55f12.3 K15903 GON7; EKC/KEOPS complex subunit GON7
C Elongator complex
D 108885307 LOW QUALITY PROTEIN: elongator complex protein 1 K11373 ELP1; elongator complex protein 1
D 108897792 LOW QUALITY PROTEIN: elongator complex protein 2 K11374 ELP2; elongator complex protein 2
D 108895792 elongator complex protein 3 K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D 108877818 elongator complex protein 4 K11375 ELP4; elongator complex protein 4
D 108879998 elongator complex protein 5 K11376 ELP5; elongator complex protein 5
D 108883194 elongator complex protein 6 K11377 ELP6; elongator complex protein 6
C Elongator related proteins
D 108892651 diphthamide biosynthesis protein 3 K15455 DPH3; diphthamide biosynthesis protein 3
D 108874333 diphthamide biosynthesis protein 3 K15455 DPH3; diphthamide biosynthesis protein 3
D 108875390 protein KTI12 homolog isoform X2 K15456 KTI12; protein KTI12
C Other tRNA modification factors
D 108898679 yrdC domain-containing protein, mitochondrial isoform X1 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D 108900409 LOW QUALITY PROTEIN: tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D 108896415 tRNA modification GTPase GTPBP3, mitochondrial isoform X1 K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D 108890409 protein MTO1 homolog, mitochondrial K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D 108902618 queuine tRNA-ribosyltransferase catalytic subunit 1 K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64]
D 108881737 queuine tRNA-ribosyltransferase accessory subunit 2 isoform X1 K15407 QTRT2; queuine tRNA-ribosyltransferase accessory subunit
D 108899624 selenide, water dikinase 3 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 108875318 selenide, water dikinase 1 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 108901171 THUMP domain-containing protein 1 K06963 TAN1; tRNA acetyltransferase TAN1
D 108882804 probable tRNA(His) guanylyltransferase isoform X1 K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
D 108885765 arginyl-tRNA--protein transferase 1 isoform X4 K00685 ATE1; arginyl-tRNA---protein transferase [EC:2.3.2.8]
D 108882555 DALR anticodon-binding domain-containing protein 3 isoform X1 K24973 DALRD3; DALR anticodon-binding domain-containing protein 3
B tRNA degradation factors
C TRAMP complex
D 108877013 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 108889046 terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 108900395 tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 108896627 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
D 108878330 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
D 108874026 LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C Rapid tRNA decay (RTD) pathway factors
D 108896664 LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 108872468 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D 108873471 3'(2'),5'-bisphosphate nucleotidase 1 isoform X1 K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
D 108891482 ifit10; interferon-induced protein with tetratricopeptide repeats 10 isoform X1 K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D 108878586 LOW QUALITY PROTEIN: zinc phosphodiesterase ELAC protein 1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 108886925 zinc phosphodiesterase ELAC protein 2-like isoform X1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 108873364 LOW QUALITY PROTEIN: zinc phosphodiesterase ELAC protein 2 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 108890272 rnaset2l; ribonuclease T2-like isoform X1 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 108877836 rnaset2; ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D 108898884 CCA tRNA nucleotidyltransferase 1, mitochondrial isoform X1 K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D 108882416 RNA-splicing ligase RtcB homolog K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D 108893533 lars1; leucine--tRNA ligase, cytoplasmic K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 108889663 probable leucine--tRNA ligase, mitochondrial K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 108896934 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D 108900379 yars1; tyrosine--tRNA ligase, cytoplasmic K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 108883074 tyrosine--tRNA ligase, mitochondrial K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 108875047 wars1; tryptophan--tRNA ligase, cytoplasmic K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 108877095 tryptophan--tRNA ligase, mitochondrial K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 108885911 threonine--tRNA ligase 1, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 108897738 tars3; threonine--tRNA ligase 1, cytoplasmic isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 108881104 tars1; threonine--tRNA ligase 1, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 108896107 isoleucine--tRNA ligase, mitochondrial isoform X1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 108891047 iars1; isoleucine--tRNA ligase, cytoplasmic isoform X1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 108890615 kars1; lysine--tRNA ligase isoform X1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D 108882270 alanine--tRNA ligase, mitochondrial K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 108901892 aars1; alanine--tRNA ligase, cytoplasmic K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 108880668 vars1; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 108896389 valine--tRNA ligase, mitochondrial isoform X1 K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 108895370 methionine--tRNA ligase, mitochondrial K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 108884823 mars1; LOW QUALITY PROTEIN: methionine--tRNA ligase, cytoplasmic K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 108874208 serine--tRNA ligase, mitochondrial K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 108882680 sars1; serine--tRNA ligase, cytoplasmic K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 108896684 aspartate--tRNA ligase, mitochondrial K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 108894186 cars1; cysteine--tRNA ligase, cytoplasmic isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 108902553 probable cysteine--tRNA ligase, mitochondrial isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 108887216 probable glutamate--tRNA ligase, mitochondrial K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D 108889503 qars1; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D 108873503 probable arginine--tRNA ligase, mitochondrial K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 108885349 rars1; arginine--tRNA ligase, cytoplasmic K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 108874819 phenylalanine--tRNA ligase, mitochondrial isoform X2 K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 108898694 LOW QUALITY PROTEIN: phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 108888203 phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D 108895522 hars; histidine--tRNA ligase isoform X1 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D 108876203 probable asparagine--tRNA ligase, mitochondrial K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 108901162 nars1; asparagine--tRNA ligase, cytoplasmic isoform X1 K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D 108884512 D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 108880123 D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 108901639 LOW QUALITY PROTEIN: D-aminoacyl-tRNA deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 108875903 alanyl-tRNA editing protein Aarsd1 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D 108898967 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D 108896415 tRNA modification GTPase GTPBP3, mitochondrial isoform X1 K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D 108873382 tRNA (adenine(37)-N6)-methyltransferase isoform X1 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D 108879301 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D 108876774 probable tRNA pseudouridine synthase 1 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D 108888945 pseudouridylate synthase PUS7L isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 108883084 pseudouridylate synthase 7 homolog isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D 108889778 cysteine desulfurase, mitochondrial K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D 108877489 EKC/KEOPS complex subunit TP53RK K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D 108888371 tRNA N6-adenosine threonylcarbamoyltransferase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 108897180 LOW QUALITY PROTEIN: tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Other tRNA modification factors
D 108890409 protein MTO1 homolog, mitochondrial K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D 108900409 LOW QUALITY PROTEIN: tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D 108891528 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D 108899624 selenide, water dikinase 3 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 108875318 selenide, water dikinase 1 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 108898679 yrdC domain-containing protein, mitochondrial isoform X1 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
C 108896242 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024