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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Latimeria chalumnae (coelacanth)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        102363493 DNA-directed RNA polymerase II subunit RPB1-like	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        102365212 POLR2B; RNA polymerase II subunit B	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        102346008 POLR2C; RNA polymerase II subunit C	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
D      Pol II specific subunits
E        102345288 POLR2D; RNA polymerase II subunit D	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        102361310 POLR2G; RNA polymerase II subunit G	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        102361828 POLR2I; RNA polymerase II subunit I	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        102365405 POLR2E; RNA polymerase II subunit E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102354614 POLR2F; RNA polymerase II subunit F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102364801 POLR2H; RNA polymerase II subunit H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102367228 POLR2K; RNA polymerase II subunit K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        102351470 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        106703480 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        102351217 GTF2A1; general transcription factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        102367410 GTF2A1L; general transcription factor IIA subunit 1 like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        102356887 GTF2A2; general transcription factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        102366610 GTF2B; general transcription factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        102360338 TBPL2; TATA-box binding protein like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102356659 TBP; TATA-box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102347114 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102347792 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102363955 TAF1; TATA-box binding protein associated factor 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        102361959 TAF2; TATA-box binding protein associated factor 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        102345841 TAF3; TATA-box binding protein associated factor 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        102361278 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102353724 TAF4; TATA-box binding protein associated factor 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102347559 TAF4B; TATA-box binding protein associated factor 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102360055 TAF5; TATA-box binding protein associated factor 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102345981 TAF5L; TATA-box binding protein associated factor 5 like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102363990 TAF6L; TATA-box binding protein associated factor 6 like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        102353675 TAF6; TATA-box binding protein associated factor 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        102346007 TAF7L; TATA-box binding protein associated factor 7 like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        102358304 TAF8; TATA-box binding protein associated factor 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        102362096 transcription initiation factor TFIID subunit 9-like	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        102367340 TAF10; TATA-box binding protein associated factor 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        102347681 TAF11; TATA-box binding protein associated factor 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        102348318 TAF12; TATA-box binding protein associated factor 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        102362267 TAF13; TATA-box binding protein associated factor 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        102349241 TAF15; TATA-box binding protein associated factor 15	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        102354419 GTF2E1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        102355331 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        102355251 GTF2E2; general transcription factor IIE subunit 2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        102354317 GTF2F1; general transcription factor IIF subunit 1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        102354010 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        102349145 GTF2H1; general transcription factor IIH subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        102353559 GTF2H2; general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        102352361 GTF2H3; general transcription factor IIH subunit 3	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        102354862 GTF2H4; general transcription factor IIH subunit 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        102345322 ERCC3; ERCC excision repair 3, TFIIH core complex helicase subunit	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        102361667 ERCC2; ERCC excision repair 2, TFIIH core complex helicase subunit	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        102360776 GTF2H5; general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        102360377 cyclin-dependent kinase 7-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        102349938 MNAT1; MNAT1, CDK activating kinase assembly factor	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        102353317 CCNH; cyclin H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        102354802 MED6; mediator complex subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        102363744 MED8; mediator complex subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        102348478 MED11; mediator complex subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        102349805 MED17; mediator complex subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        102348984 MED18; mediator complex subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        102364013 MED19; mediator complex subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        102356649 MED20; mediator complex subunit 20	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        102351920 MED22; mediator complex subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        102347319 MED28; mediator complex subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        102348963 MED29; mediator complex subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        102352943 MED30; mediator complex subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        102349739 MED1; mediator complex subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        102365441 MED4; mediator complex subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        102351401 MED7; mediator complex subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        102363601 MED9; mediator complex subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        102351248 MED10; mediator complex subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        102360161 MED21; mediator complex subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        102361641 MED31; mediator complex subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        102363039 MED14; mediator complex subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        102346069 MED15; mediator complex subunit 15	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        102347347 MED16; mediator complex subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        102355631 CDK8; cyclin dependent kinase 8	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        102346410 CDK19; cyclin dependent kinase 19	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        102364377 CCNC; cyclin C	K15161 CCNC; cyclin-C 
E        102357001 MED12L; mediator complex subunit 12 like	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        102363513 MED12; mediator complex subunit 12	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        102358361 MED13; mediator complex subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        102355048 mediator of RNA polymerase II transcription subunit 13-like	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        102346517 MED23; mediator complex subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        102357418 MED25; mediator complex subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        102352371 MED26; mediator complex subunit 26	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        102357852 MED27; mediator complex subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        102366092 KAT2B; lysine acetyltransferase 2B	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        102346903 KAT2A; lysine acetyltransferase 2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        102355943 TRRAP; transformation/transcription domain associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        102351641 transformation/transcription domain-associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        102351506 SUPT3H; SPT3 homolog, SAGA and STAGA complex component	K11313 SUPT3H; transcription initiation protein SPT3 
E        102348189 TADA2A; transcriptional adaptor 2A	K11314 TADA2A; transcriptional adapter 2-alpha 
E        102354066 TADA2B; transcriptional adaptor 2B	K15127 TADA2B; transcriptional adapter 2-beta 
E        102359334 TADA3; transcriptional adaptor 3	K11315 TADA3; transcriptional adapter 3 
E        102357252 TADA1; transcriptional adaptor 1	K11317 TADA1; transcriptional adapter 1 
E        102361959 TAF2; TATA-box binding protein associated factor 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        102361278 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102353724 TAF4; TATA-box binding protein associated factor 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102347559 TAF4B; TATA-box binding protein associated factor 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102360055 TAF5; TATA-box binding protein associated factor 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102345981 TAF5L; TATA-box binding protein associated factor 5 like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102363990 TAF6L; TATA-box binding protein associated factor 6 like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        102353675 TAF6; TATA-box binding protein associated factor 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        102346007 TAF7L; TATA-box binding protein associated factor 7 like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        102362096 transcription initiation factor TFIID subunit 9-like	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        102367340 TAF10; TATA-box binding protein associated factor 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        102348318 TAF12; TATA-box binding protein associated factor 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        102356283 ATXN7L3; ataxin 7 like 3	K11363 SGF11; SAGA-associated factor 11 
E        102353694 SGF29; SAGA complex associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        102350531 SUPT7L; SPT7-like STAGA complex gamma subunit	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        102361590 ATXN7L2; ataxin 7 like 2	K11318 ATXN7; ataxin-7 
E        102346435 ATXN7L1; ataxin 7 like 1	K11318 ATXN7; ataxin-7 
E        102347313 ataxin-7	K11318 ATXN7; ataxin-7 
E        102356800 CHD1; chromodomain helicase DNA binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        102351089 ENY2; ENY2, transcription and export complex 2 subunit	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        102356785 USP22; ubiquitin carboxyl-terminal hydrolase 22-A	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        102347991 SF3B3; splicing factor 3b subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        102350646 SMARCA2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        102359308 SMARCA4; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        102365954 SMARCB1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        102360105 SMARCC2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102347762 SWI/SNF complex subunit SMARCC1-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102347267 SMARCD1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        102348244 SMARCD2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        102347914 SMARCD3; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        102360041 SMARCE1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        102366223 actin, cytoplasmic type 5-like	K05692 ACTB_G1; actin beta/gamma 1 
E        102362654 ACTB; actin beta	K05692 ACTB_G1; actin beta/gamma 1 
E        102347067 ACTL6A; actin like 6A	K11340 ACTL6A; actin-like protein 6A 
E        102365713 ACTL6B; actin-like protein 6B	K11652 ACTL6B; actin-like protein 6B 
E        102364522 ARID1A; AT-rich interaction domain 1A	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        102358224 ARID1B; AT-rich interaction domain 1B	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        102357847 ARID2; AT-rich interaction domain 2	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        102359995 protein polybromo-1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        102365954 SMARCB1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        102355539 SUB1; SUB1 homolog, transcriptional regulator	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        102347352 CCAR1; cell division cycle and apoptosis regulator 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
E        102354350 CALCOCO1; calcium binding and coiled-coil domain 1	K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        102366169 TCEA1; transcription elongation factor A1	K03145 TFIIS; transcription elongation factor S-II 
E        102348298 TCEA2; transcription elongation factor A2	K03145 TFIIS; transcription elongation factor S-II 
E        102352573 TCEA3; transcription elongation factor A protein 3	K03145 TFIIS; transcription elongation factor S-II 
E        102366332 SUPT4H1; SPT4 homolog, DSIF elongation factor subunit	K15171 SUPT4H1; transcription elongation factor SPT4 
E        102347844 SUPT5H; SPT5 homolog, DSIF elongation factor subunit	K15172 SUPT5H; transcription elongation factor SPT5 
E        102352565 SUPT6H; SPT6 homolog, histone chaperone	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        102365480 TTF2; transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        102347362 PCF11; PCF11 cleavage and polyadenylation factor subunit	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        102350672 CPSF1; cleavage and polyadenylation specific factor 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        102367080 CPSF3; cleavage and polyadenylation specific factor 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        102349510 CPSF4L; cleavage and polyadenylation specific factor 4 like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        102359754 CPSF4; cleavage and polyadenylation specific factor 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        102361180 PPP1CA; protein phosphatase 1 catalytic subunit alpha	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102359594 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102359947 PPP1CB; protein phosphatase 1 catalytic subunit beta	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102362859 PPP1CC; protein phosphatase 1 catalytic subunit gamma	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102361284 serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102363760 SYMPK; symplekin	K06100 SYMPK; symplekin 
E        102346149 SSU72; SSU72 homolog, RNA polymerase II CTD phosphatase	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        102366306 XRN2; 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        102352788 DXO; decapping exoribonuclease	K14845 RAI1; RAT1-interacting protein 
E        102366304 RPRD1B; regulation of nuclear pre-mRNA domain containing 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        102348619 SFPQ; splicing factor proline and glutamine rich	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        102346927 SCAF8; SR-related CTD associated factor 8	K13191 RBM16; RNA-binding protein 16 
E        102354080 SCAF4; SR-related CTD associated factor 4	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        102362914 PIN1; peptidylprolyl cis/trans isomerase, NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        102348700 PAF1; PAF1 homolog, Paf1/RNA polymerase II complex component	K15174 PAF1; RNA polymerase II-associated factor 1 
E        102347648 parafibromin-like	K15175 CDC73; parafibromin 
E        102345823 CDC73; cell division cycle 73	K15175 CDC73; parafibromin 
E        102346084 CTR9; CTR9 homolog, Paf1/RNA polymerase II complex component	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        102345592 LEO1; LEO1 homolog, Paf1/RNA polymerase II complex component	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        102363549 RTF1; RTF1 homolog, Paf1/RNA polymerase II complex component	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        102364394 NELFA; negative elongation factor complex member A	K15179 WHSC2; negative elongation factor A 
E        102362619 NELFB; negative elongation factor complex member B	K15180 COBRA1; negative elongation factor B 
E        102353456 NELFCD; negative elongation factor complex member C/D	K15181 TH1L; negative elongation factor C/D 
E        102361248 NELFE; negative elongation factor complex member E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        102358114 ELL3; elongation factor for RNA polymerase II 3	K15183 ELL; RNA polymerase II elongation factor ELL 
E        102352915 ELL2; elongation factor for RNA polymerase II 2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        102350591 ELL; elongation factor for RNA polymerase II	K15183 ELL; RNA polymerase II elongation factor ELL 
E        102361211 AFF1; AF4/FMR2 family member 1	K15184 AFF1; AF4/FMR2 family member 1 
E        102351691 AFF4; AF4/FMR2 family member 4	K15185 AFF4; AF4/FMR2 family member 4 
E        102366954 EAF1; ELL associated factor 1	K15186 EAF; ELL-associated factor 
E        102359646 protein AF-9-like	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        102354591 protein ENL-like	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        102358846 CCNT1; cyclin T1	K15188 CCNT; cyclin T 
E        102354567 CCNT2; cyclin T2	K15188 CCNT; cyclin T 
E        102365476 CDK9; cyclin dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        102358114 ELL3; elongation factor for RNA polymerase II 3	K15183 ELL; RNA polymerase II elongation factor ELL 
E        102352915 ELL2; elongation factor for RNA polymerase II 2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        102350591 ELL; elongation factor for RNA polymerase II	K15183 ELL; RNA polymerase II elongation factor ELL 
E        102350276 ICE1; interactor of little elongation complex ELL subunit 1	K26143 ICE1; little elongation complex subunit 1 
E        102355616 ICE2; interactor of little elongation complex ELL subunit 2	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        102357551 BRD4; bromodomain containing 4	K11722 BRD4; bromodomain-containing protein 4 
E        102358846 CCNT1; cyclin T1	K15188 CCNT; cyclin T 
E        102354567 CCNT2; cyclin T2	K15188 CCNT; cyclin T 
E        102365476 CDK9; cyclin dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        102349166 protein HEXIM1-like	K15189 HEXIM1_2; protein HEXIM1/2 
E        102349442 protein HEXIM1-like	K15189 HEXIM1_2; protein HEXIM1/2 
E        102351590 MEPCE; methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        102358512 LARP7; La ribonucleoprotein domain family member 7	K15191 LARP7; La-related protein 7 
E        102358846 CCNT1; cyclin T1	K15188 CCNT; cyclin T 
E        102354567 CCNT2; cyclin T2	K15188 CCNT; cyclin T 
E        102365476 CDK9; cyclin dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        102363472 CCAR2; cell cycle and apoptosis regulator 2	K25816 CCAR2; cell cycle and apoptosis regulator protein 2 
E        102347169 DBIRD complex subunit ZNF326-like	K13204 ZNF326; zinc finger protein 326 
E        102345847 DBIRD complex subunit ZNF326-like	K13204 ZNF326; zinc finger protein 326 
D      Others
E        102364496 GTF2I; general transcription factor IIi	K03121 TFII-I; transcription initiation factor TFII-I 
E        102360106 BTAF1; B-TFIID TATA-box binding protein associated factor 1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        102351076 DR1; down-regulator of transcription 1	K21751 DR1; down-regulator of transcription 1 
E        102353108 protein Dr1-like	K21751 DR1; down-regulator of transcription 1 
E        102364110 dr1-associated corepressor-like	K21752 DRAP1; Dr1-associated corepressor 
E        102350778 dr1-associated corepressor-like	K21752 DRAP1; Dr1-associated corepressor 
E        102360543 SPTY2D1; SPT2 chromatin protein domain containing 1	K15193 SPTY2D1; protein SPT2 
E        102347784 AFF2; AF4/FMR2 family member 2	K15194 AFF2; AF4/FMR2 family member 2 
E        102358777 AFF3; AF4/FMR2 family member 3	K15195 AFF3; AF4/FMR2 family member 3 
E        102353263 CTDP1; CTD phosphatase subunit 1	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        102354130 CTDSP2; CTD small phosphatase 2	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        102361832 CTDSP1; CTD small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        102357944 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        102366848 IWS1; IWS1, SUPT6H interacting protein	K17498 SPN1; transcription factor SPN1 
E        102355361 CSRNP2; cysteine and serine rich nuclear protein 2	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        102364391 CSRNP3; cysteine and serine rich nuclear protein 3	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        102348166 CSRNP1; cysteine and serine rich nuclear protein 1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        102348443 RPAP1; RNA polymerase II associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        102356505 RPAP2; RNA polymerase II associated protein 2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        102349008 RPAP3; RNA polymerase II associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        102362909 CCNK; cyclin K	K23326 CCNK; cyclin K 
E        102365548 GPN2; GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        102365490 GPN3; GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        102348640 GPN1; GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        102359187 POLR3A; RNA polymerase III subunit A	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        102363903 POLR3B; RNA polymerase III subunit B	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        102350013 POLR1C; RNA polymerase I subunit C	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        102357780 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        102354671 POLR3C; RNA polymerase III subunit C	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        102356300 POLR3D; RNA polymerase III subunit D	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        102348413 POLR3E; RNA polymerase III subunit E	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        102346360 POLR3GL; RNA polymerase III subunit G like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        102349043 POLR3G; RNA polymerase III subunit G	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        102357016 POLR3H; RNA polymerase III subunit H	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        102366913 CRCP; CGRP receptor component	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        102356379 POLR3K; RNA polymerase III subunit K	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        102365405 POLR2E; RNA polymerase II subunit E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102354614 POLR2F; RNA polymerase II subunit F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102364801 POLR2H; RNA polymerase II subunit H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102367228 POLR2K; RNA polymerase II subunit K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        102351470 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        106703480 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        102345392 GTF3A; general transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        102350978 zinc finger protein 85-like	K09191 GTF3A; general transcription factor IIIA 
E        102350549 P43 5S RNA-binding protein-like	K09191 GTF3A; general transcription factor IIIA 
E        106706057 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        102357838 gastrula zinc finger protein XlCGF7.1-like	K09191 GTF3A; general transcription factor IIIA 
E        106702356 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        102360338 TBPL2; TATA-box binding protein like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102356659 TBP; TATA-box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102347114 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102347792 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102346497 BRF1; BRF1, RNA polymerase III transcription initiation factor subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        102361356 BRF2; BRF2, RNA polymerase III transcription initiation factor subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        102361043 transcription factor TFIIIB component B'' homolog	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        102353404 GTF3C1; general transcription factor IIIC subunit 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        102352129 GTF3C2; general transcription factor IIIC subunit 2	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        102366484 GTF3C3; general transcription factor IIIC subunit 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        102365035 GTF3C4; general transcription factor IIIC subunit 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        102353774 GTF3C5; general transcription factor IIIC subunit 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        102349040 GTF3C6; general transcription factor IIIC subunit 6	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        102353774 GTF3C5; general transcription factor IIIC subunit 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        102366484 GTF3C3; general transcription factor IIIC subunit 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        102347475 SNAPC1; small nuclear RNA activating complex polypeptide 1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        102359812 SNAPC2; small nuclear RNA activating complex polypeptide 2	K15209 SNAPC2; snRNA-activating protein complex subunit 2 
E        102365012 SNAPC3; small nuclear RNA activating complex polypeptide 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        102357585 SNAPC5; small nuclear RNA activating complex polypeptide 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        102359106 POU2F3; POU class 2 homeobox 3	K09364 POU2F; POU domain transcription factor, class 2 
E        102350450 POU2F2; POU class 2 homeobox 2	K09364 POU2F; POU domain transcription factor, class 2 
E        102365537 POU2F1; POU class 2 homeobox 1	K09364 POU2F; POU domain transcription factor, class 2 
E        102355666 POU domain, class 5, transcription factor 1-like	K09367 POU5F; POU domain transcription factor, class 5 
E        102362664 POU domain, class 5, transcription factor 3-like	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        102365714 ZNF143; zinc finger protein 143	K20828 ZNF143_76; zinc finger protein 143/76 
E        102350313 ZNF76; zinc finger protein 76	K20828 ZNF143_76; zinc finger protein 143/76 
E        102356778 MAF1; MAF1 homolog, negative regulator of RNA polymerase III	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        102347375 POLR1B; RNA polymerase I subunit B	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        102350013 POLR1C; RNA polymerase I subunit C	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        102357780 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        102363807 POLR1E; RNA polymerase I subunit E	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        102345644 TWISTNB; TWIST neighbor	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        102352562 CD3EAP; CD3e molecule associated protein	K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34 
E        102363168 ZNRD1; zinc ribbon domain containing 1	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        102365405 POLR2E; RNA polymerase II subunit E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102354614 POLR2F; RNA polymerase II subunit F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102364801 POLR2H; RNA polymerase II subunit H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102367228 POLR2K; RNA polymerase II subunit K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        102351470 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        106703480 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        102360338 TBPL2; TATA-box binding protein like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102356659 TBP; TATA-box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102347114 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102347792 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102358324 TAF1A; TATA-box binding protein associated factor, RNA polymerase I subunit A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        102360493 TAF1B; TATA-box binding protein associated factor, RNA polymerase I subunit B	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        102361108 TAF1C; TATA-box binding protein associated factor, RNA polymerase I subunit C	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
E        102355619 TAF1D; TATA-box binding protein associated factor, RNA polymerase I subunit D	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
E        102357340 UBTF; upstream binding transcription factor, RNA polymerase I	K09273 UBTF; upstream-binding transcription factor 
E        102346133 nucleolar transcription factor 1-A-like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        102362950 RRN3; RRN3 homolog, RNA polymerase I transcription factor	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        102366332 SUPT4H1; SPT4 homolog, DSIF elongation factor subunit	K15171 SUPT4H1; transcription elongation factor SPT4 
E        102347844 SUPT5H; SPT5 homolog, DSIF elongation factor subunit	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        102354964 SMARCA5; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        102355413 BAZ2A; bromodomain adjacent to zinc finger domain 2A	K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A 
D      CTDK-I complex
D      Transcription termination factors
E        102364349 TTF1; transcription termination factor 1	K15225 TTF1; transcription termination factor 1 
E        102363235 PTRF; polymerase I and transcript release factor	K19387 PTRF; polymerase I and transcript release factor 
D      Others
E        102347965 NOLC1; nucleolar and coiled-body phosphoprotein 1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        102366610 GTF2B; general transcription factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        102354419 GTF2E1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        102355331 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024