+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lacticaseibacillus paracasei W56
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BN194_17870 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BN194_16990 era; GTPase Era K03595 era; GTPase
C BN194_15440 obg; GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BN194_17580 nusA; Transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
C BN194_18220 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
C BN194_24260 nusG; Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BN194_09230 ytzG; Uncharacterized RNA pseudouridine synthase YtzG K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BN194_27020 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BN194_18040 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BN194_24020 ybxB; Uncharacterized protein ybxB K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BN194_15190 ylbH; Putative rRNA methyltransferase ylbH K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BN194_17250 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BN194_02020 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BN194_14680 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BN194_23920 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BN194_18170 yqxC; Putative rRNA methyltransferase YqxC K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BN194_24420 yacO; Putative TrmH family tRNA/rRNA methyltransferase YacO K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BN194_29360 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BN194_18170 yqxC; Putative rRNA methyltransferase YqxC K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BN194_11990 Uncharacterized RNA methyltransferase lp_1151 K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BN194_15650 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BN194_19100 ylyB_2; Uncharacterized RNA pseudouridine synthase YlyB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BN194_16500 ylyB; Uncharacterized RNA pseudouridine synthase YlyB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BN194_20220 yhcT_2; Uncharacterized RNA pseudouridine synthase YhcT K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BN194_09890 yhcT; Uncharacterized RNA pseudouridine synthase YhcT K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C BN194_23860 rimI; Putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BN194_20580 Orn/DAP/Arg decarboxylase 2 K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C BN194_29930 Acetyltransferase, including N-acetylase of ribosomal protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C BN194_17790 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C BN194_17260 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C BN194_17870 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BN194_08520 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BN194_26700 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C BN194_08460 cshB; DEAD-box ATP-dependent RNA helicase CshB K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C BN194_16990 era; GTPase Era K03595 era; GTPase
C BN194_18010 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BN194_15730 der; GTPase Der K03977 engA; GTPase
C BN194_15440 obg; GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
C BN194_15940 rbgA; Ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
C BN194_21260 hflX; GTPase HflX K03665 hflX; GTPase
C BN194_18740 yqeH; Uncharacterized protein yqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C BN194_13530 ywlC; Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BN194_17230 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BN194_17540 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BN194_17590 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C BN194_00040 yaaA; Uncharacterized protein yaaA K14761 rlbA; ribosome-associated protein
C BN194_18710 yqeL; Uncharacterized protein yqeL K09710 ybeB; ribosome-associated protein
C BN194_17010 Probable rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C BN194_10150 Uncharacterized protein SE_0534 K05808 hpf; ribosome hibernation promoting factor
C BN194_02070 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase
C BN194_18680 Nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024