+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lactobacillus delbrueckii subsp. bulgaricus ND02
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LDBND_1318 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LDBND_1139 GTP-binding protein era-like protein K03595 era; GTPase
C LDBND_0744 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LDBND_1278 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C LDBND_1354 nusB; Transcription termination factor K03625 nusB; transcription antitermination protein NusB
C LDBND_1566 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LDBND_0659 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D LDBND_0293 ksgA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LDBND_1340 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LDBND_1545 16S RNA methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D LDBND_0702 RsmD family RNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LDBND_1901 gidB; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LDBND_0671 mraW; S-adenosyl-L-methionine-dependent methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LDBND_1535 Tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LDBND_1349 Ribosomal RNA large subunit methyltransferase J K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D LDBND_1573 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LDBND_0116 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LDBND_1349 Ribosomal RNA large subunit methyltransferase J K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LDBND_0416 tRNA (Uracil-5-)-methyltransferase related enzyme K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LDBND_0769 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LDBND_0528 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LDBND_1477 Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LDBND_0915 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C LDBND_1531 Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LDBND_1024 Acetyltransferase, including N-acetylase of ribosomal protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C LDBND_1311 rimM; Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM
C LDBND_0813 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C LDBND_1318 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LDBND_1513 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C LDBND_1574 Ribonuclease III family protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C LDBND_0306 DEAD box ATP-dependent RNA helicase SrmB K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C LDBND_1516 ATP-dependent helicase (DEAD/DEAH box family) K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C LDBND_1139 GTP-binding protein era-like protein K03595 era; GTPase
C LDBND_1337 Ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LDBND_0774 GTP-binding protein engA K03977 engA; GTPase
C LDBND_0744 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
C LDBND_1164 Ras superfamily GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
C LDBND_1854 Putative GTP-binding protein K03665 hflX; GTPase
C LDBND_1433 Ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C LDBND_0634 Putative translation factor (Sua5 family) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LDBND_0814 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LDBND_1274 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LDBND_1279 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
C LDBND_0003 S4-like RNA binding protein K14761 rlbA; ribosome-associated protein
C LDBND_1430 Iojap family protein K09710 ybeB; ribosome-associated protein
C LDBND_1141 Putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C LDBND_0548 Ribosome-associated factor Y K05808 hpf; ribosome hibernation promoting factor
C LDBND_1896 ychF; Predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
C LDBND_1428 Predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024