+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lactobacillus delbrueckii subsp. bulgaricus 2038

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E LBU_0539 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LBU_0126 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LBU_0856 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LBU_1039 putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBU_0261 Hypothetical conserved protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBU_1471 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LBU_1041 S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LBU_1042 Hypothetical conserved protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E LBU_0539 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LBU_0126 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LBU_1296 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LBU_0856 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LBU_0057 Exodeoxyribonuclease A K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LBU_1120 Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LBU_0384 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LBU_1297 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LBU_0518 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E LBU_0517 UvrB K03702 uvrB; excinuclease ABC subunit B E LBU_0699 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E LBU_0383 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBU_1566 probable ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBU_1297 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LBU_0384 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LBU_0313 RNA-polymerase DNA-directed beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LBU_0314 RNA-polymerase DNA-directed beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LBU_0345 RNA-polymerase DNA-directed K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LBU_0283 RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LBU_1210 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LBU_0293 Transcriptional repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LBU_1377 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E LBU_0078 Hypothetical conserved protein K07456 mutS2; DNA mismatch repair protein MutS2 E LBU_1364 Mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LBU_1376 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LBU_1220 Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LBU_1219 Probable exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LBU_0715 DNA polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LBU_1146 DNA polymerase III alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LBU_0002 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LBU_0664 Putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LBU_1390 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LBU_0542 DNA polymerase III alpha chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LBU_0991 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LBU_1396 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LBU_0384 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LBU_0383 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBU_1566 probable ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBU_0008 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LBU_0651 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LBU_0503 Protein recA K03553 recA; recombination protein RecA E LBU_1375 Helicase Holliday junction K03550 ruvA; holliday junction DNA helicase RuvA E LBU_1374 Helicase Holliday junction K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LBU_1209 Primosomal replication factor K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LBU_0503 Protein recA K03553 recA; recombination protein RecA E LBU_1470 DNA repair protein K04485 radA; DNA repair protein RadA/Sms E LBU_0004 DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E LBU_1195 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LBU_0245 Hypothetical conserved protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LBU_1120 Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LBU_1068 DNA repair protein recO protein K03584 recO; DNA repair protein RecO (recombination protein O) E LBU_1394 Recombination protein recR K06187 recR; recombination protein RecR E LBU_1216 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LBU_0863 recombination protein RecU K03700 recU; recombination protein U E LBU_1375 Helicase Holliday junction K03550 ruvA; holliday junction DNA helicase RuvA E LBU_1374 Helicase Holliday junction K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LBU_0851 ATP-dependent exonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LBU_0850 ATP-dependent exonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E LBU_0747 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LBU_0006 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LBU_0005 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LBU_1087 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LBU_0731 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F LBU_1406 HlbB protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LBU_1120 Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LBU_1068 DNA repair protein recO protein K03584 recO; DNA repair protein RecO (recombination protein O) F LBU_1394 Recombination protein recR K06187 recR; recombination protein RecR F LBU_0384 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LBU_0697 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LBU_0518 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F LBU_0517 UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LBU_1371 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LBU_0229 Putative structural gene for ultraviolet resistance K03502 umuC; DNA polymerase V C Other SOS response factors D LBU_0503 Protein recA K03553 recA; recombination protein RecA D LBU_1165 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LBU_1216 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LBU_0008 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LBU_0469 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LBU_0852 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LBU_1170 Hypothetical conserved protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D LBU_1039 putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBU_0261 Hypothetical conserved protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBU_1471 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D LBU_1370 Hypothetical conserved protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024