+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leclercia sp. W17

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DVA44_13005 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DVA44_17290 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DVA44_05780 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DVA44_03840 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DVA44_13575 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DVA44_20110 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DVA44_00450 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DVA44_13005 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DVA44_04930 bifunctional transcriptional activator/DNA repair protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DVA44_07190 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DVA44_17290 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D DVA44_07195 DNA oxidative demethylase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E DVA44_05780 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DVA44_03340 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E DVA44_07790 DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DVA44_03840 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DVA44_00850 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DVA44_00475 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DVA44_17250 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E DVA44_13575 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DVA44_14250 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E DVA44_07415 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E DVA44_01035 deoxyribonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D RecJ E DVA44_04255 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DVA44_00415 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E DVA44_06480 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DVA44_23470 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DVA44_12210 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E DVA44_22295 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E DVA44_23960 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E DVA44_16945 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E DVA44_08430 excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E DVA44_14210 excinuclease Cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E DVA44_22705 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DVA44_25440 DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DVA44_23470 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DVA44_00415 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E DVA44_06480 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DVA44_00970 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DVA44_00975 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DVA44_02160 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DVA44_00405 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DVA44_14890 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DVA44_04910 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E DVA44_21725 DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E DVA44_04525 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E DVA44_08070 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E DVA44_06170 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DVA44_18700 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E DVA44_09265 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E DVA44_19715 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DVA44_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DVA44_02595 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E DVA44_17510 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DVA44_14965 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DVA44_19555 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DVA44_18415 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E DVA44_20705 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E DVA44_09275 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E DVA44_00415 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E DVA44_06480 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DVA44_22705 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DVA44_25440 DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DVA44_19370 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DVA44_22285 single-stranded DNA-binding protein SSB1 K03111 ssb; single-strand DNA-binding protein E DVA44_01785 adenine-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DVA44_24235 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DVA44_08190 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DVA44_04580 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E DVA44_04570 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E DVA44_04585 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DVA44_05035 recA; recombinase RecA K03553 recA; recombination protein RecA E DVA44_09185 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DVA44_09190 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DVA44_09180 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DVA44_08535 RusA family crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E DVA44_23080 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DVA44_21595 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E DVA44_18430 primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E DVA44_20780 primosomal protein DnaT K02317 dnaT; DNA replication protein DnaT E DVA44_08070 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E DVA44_18840 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E DVA44_18835 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DVA44_05035 recA; recombinase RecA K03553 recA; recombination protein RecA E DVA44_20600 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DVA44_00015 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E DVA44_00390 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DVA44_04255 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DVA44_05855 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DVA44_18405 recombination protein RecR K06187 recR; recombination protein RecR E DVA44_05590 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DVA44_18850 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E DVA44_09185 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DVA44_09190 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DVA44_09180 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E DVA44_07290 ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E DVA44_18840 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E DVA44_18835 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E DVA44_02565 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DVA44_07160 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DVA44_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DVA44_10430 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DVA44_01045 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F DVA44_18605 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DVA44_12615 exodeoxyribonuclease VIII K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] F DVA44_13455 DNA recombinase K07455 recT; recombination protein RecT F DVA44_04255 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DVA44_05855 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DVA44_18405 recombination protein RecR K06187 recR; recombination protein RecR F DVA44_00415 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F DVA44_06480 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DVA44_02335 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F DVA44_14060 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F DVA44_16015 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F DVA44_08070 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F DVA44_22680 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DVA44_12210 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F DVA44_22295 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F DVA44_23960 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F DVA44_16945 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F DVA44_09995 DNA-binding transcriptional regulator H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DVA44_19475 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DVA44_08710 translesion error-prone DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D DVA44_11295 translesion error-prone DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D DVA44_08705 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D DVA44_11155 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D DVA44_05035 recA; recombinase RecA K03553 recA; recombination protein RecA D DVA44_08530 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D DVA44_22365 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DVA44_05590 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DVA44_20305 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D DVA44_19370 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DVA44_22285 single-stranded DNA-binding protein SSB1 K03111 ssb; single-strand DNA-binding protein D DVA44_10175 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D DVA44_14675 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D DVA44_15170 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D DVA44_05040 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DVA44_22870 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D DVA44_15760 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D DVA44_09465 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DVA44_16850 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D DVA44_20110 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DVA44_00450 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DVA44_05160 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DVA44_07150 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DVA44_05155 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DVA44_07145 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025