+F Repair protein KO
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DNA Repair and Recombination Proteins - Leptolyngbya sp. NIES-3755
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LEP3755_20100 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LEP3755_45610 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D LEP3755_30130 deoxyribodipyrimidine photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E LEP3755_08450 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LEP3755_57790 base excision DNA repair protein, HhH-GPD family K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E LEP3755_55150 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E LEP3755_03040 base excision DNA repair protein, HhH-GPD family K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D LEP3755_51990 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LEP3755_00940 mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LEP3755_20100 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LEP3755_45610 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D LEP3755_30130 deoxyribodipyrimidine photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D LEP3755_42430 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E LEP3755_62320 uracil DNA glycosylase superfamily protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E LEP3755_00270 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E LEP3755_21090 base excision DNA repair protein, HhH-GPD family K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E LEP3755_08450 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LEP3755_40840 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E LEP3755_24640 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E LEP3755_57790 base excision DNA repair protein, HhH-GPD family K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E LEP3755_55150 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E LEP3755_03040 base excision DNA repair protein, HhH-GPD family K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E LEP3755_33520 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E LEP3755_31140 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
E LEP3755_10110 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E LEP3755_19000 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LEP3755_37190 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E LEP3755_08000 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E LEP3755_52820 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E LEP3755_20290 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E LEP3755_17490 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E LEP3755_47480 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LEP3755_15580 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LEP3755_08000 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F LEP3755_22210 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F LEP3755_22220 DNA-directed RNA polymerase subunit gamma K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F LEP3755_22230 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F LEP3755_29550 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F LEP3755_14740 hypothetical protein_484 K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F LEP3755_12800 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E LEP3755_26970 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E LEP3755_30280 MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E LEP3755_04900 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E LEP3755_46520 exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E LEP3755_46530 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E LEP3755_24680 DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E LEP3755_24700 DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E LEP3755_42880 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E LEP3755_31960 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E LEP3755_27300 hypothetical protein ORF306 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E LEP3755_30160 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LEP3755_56660 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E LEP3755_08000 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E LEP3755_47480 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LEP3755_15580 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LEP3755_36890 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E LEP3755_19800 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E LEP3755_17470 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LEP3755_61670 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LEP3755_24740 site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E LEP3755_67010 recombinase D K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E LEP3755_46510 RecA protein K03553 recA; recombination protein RecA
E LEP3755_41880 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E LEP3755_32760 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LEP3755_57800 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E LEP3755_22820 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E LEP3755_37270 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E LEP3755_47580 SMC domain-containing protein K03546 sbcC; DNA repair protein SbcC/Rad50
E LEP3755_30100 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
E LEP3755_53170 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E LEP3755_46510 RecA protein K03553 recA; recombination protein RecA
E LEP3755_40990 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E LEP3755_61920 recombination protein F K03629 recF; DNA replication and repair protein RecF
E LEP3755_22730 DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E LEP3755_19000 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LEP3755_37190 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LEP3755_60240 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E LEP3755_33470 recombination protein RecR K06187 recR; recombination protein RecR
E LEP3755_06990 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E LEP3755_41880 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E LEP3755_32760 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LEP3755_57800 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E LEP3755_33810 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E LEP3755_37270 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E LEP3755_47580 SMC domain-containing protein K03546 sbcC; DNA repair protein SbcC/Rad50
E LEP3755_30100 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
E LEP3755_53170 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F LEP3755_51290 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F LEP3755_46990 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F LEP3755_31290 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F LEP3755_48670 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F LEP3755_42360 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F LEP3755_00980 putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F LEP3755_31900 DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta
F LEP3755_46600 DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F LEP3755_19000 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F LEP3755_37190 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F LEP3755_60240 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F LEP3755_33470 recombination protein RecR K06187 recR; recombination protein RecR
F LEP3755_08000 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F LEP3755_07980 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LEP3755_60530 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LEP3755_50680 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LEP3755_52820 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F LEP3755_20290 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D LEP3755_46510 RecA protein K03553 recA; recombination protein RecA
D LEP3755_22430 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D LEP3755_47890 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D LEP3755_64890 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D LEP3755_06990 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D LEP3755_36890 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LEP3755_19800 hypothetical protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D LEP3755_41930 ATP-dependent DNA helicase RecQ K03658 helD; DNA helicase IV [EC:5.6.2.4]
D LEP3755_56480 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D LEP3755_60780 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D LEP3755_51990 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LEP3755_00940 mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024