+E Transcription factors KO #

  Transcription Factors - Leuconostoc gelidum JB7

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D C269_04120 DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D C269_05145 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D C269_00260 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D C269_00865 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D C269_03320 fructose operon transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D C269_00110 LacI family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C269_06735 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C269_02750 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C269_07600 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C269_08625 sugar transport repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C269_00310 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D C269_04890 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D C269_06840 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D C269_05705 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D C269_07250 sugar transport repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D C269_03765 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D C269_00410 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor C GntR family D C269_01250 arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D C269_01535 trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D C269_08810 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D C269_01420 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D C269_02325 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D C269_00700 transcriptional regulator K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family C Lrp/AsnC family C LuxR family C MarR family D C269_00965 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D C269_03745 glutamine synthetase repressor K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor C Fur family D C269_08620 ferric uptake regulation protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D C269_02375 ferric uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D C269_04560 Crp family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D C269_07815 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D C269_08645 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D C269_05215 helix-turn-helix domain-containing protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family D C269_08830 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D C269_01505 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D C269_07640 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D C269_00050 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D C269_01010 biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D C269_06495 nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D C269_01185 XRE family transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D C269_00085 transcriptional activator, Rgg/GadR/MutR family protein K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator D C269_04900 transcriptional activator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor D C269_01990 immunity repressor protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator D C269_02500 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D C269_01955 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D C269_04770 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D C269_04795 putative transcriptional regulator K07729 K07729; putative transcriptional regulator D C269_02800 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D C269_05245 transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family D C269_00660 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator D C269_08605 transcriptional regulator K03493 bglG1; transcriptional antiterminator D C269_02960 BglG family transcriptional regulator K03491 licR; probable licABCH operon transcriptional regulator C Others D C269_05655 purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D C269_07795 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C269_04255 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D C269_06605 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D C269_03910 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D C269_02280 thiaminase-2 K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D C269_00035 stress-responsive transcription regulator K03973 pspC; phage shock protein C D C269_03795 PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D C269_06350 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0