+E Transcription factors KO
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Transcription Factors - Leuconostoc gelidum JB7
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D C269_04120 DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D C269_05145 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D C269_00260 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D C269_00865 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D C269_03320 fructose operon transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D C269_00110 LacI family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C269_06735 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C269_02750 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C269_07600 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C269_08625 sugar transport repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C269_00310 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D C269_04890 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D C269_06840 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D C269_05705 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D C269_07250 sugar transport repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D C269_03765 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D C269_00410 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D C269_01250 arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D C269_01535 trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D C269_08810 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D C269_01420 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D C269_02325 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D C269_00700 transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
C Lrp/AsnC family
C LuxR family
C MarR family
D C269_00965 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D C269_03745 glutamine synthetase repressor K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
C Fur family
D C269_08620 ferric uptake regulation protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D C269_02375 ferric uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D C269_04560 Crp family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
D C269_07815 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D C269_08645 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D C269_05215 helix-turn-helix domain-containing protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D C269_08830 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C269_01505 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C269_07640 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C269_00050 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D C269_01010 biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D C269_06495 nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D C269_01185 XRE family transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D C269_00085 transcriptional activator, Rgg/GadR/MutR family protein K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D C269_04900 transcriptional activator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D C269_01990 immunity repressor protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D C269_02500 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D C269_01955 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D C269_04770 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D C269_04795 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D C269_02800 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D C269_05245 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D C269_00660 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D C269_08605 transcriptional regulator K03493 bglG1; transcriptional antiterminator
D C269_02960 BglG family transcriptional regulator K03491 licR; probable licABCH operon transcriptional regulator
C Others
D C269_05655 purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D C269_07795 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C269_04255 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D C269_06605 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D C269_03910 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D C269_02280 thiaminase-2 K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D C269_00035 stress-responsive transcription regulator K03973 pspC; phage shock protein C
D C269_03795 PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D C269_06350 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0