+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lysobacter gummosus
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LG3211_1753 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D LG3211_4663 phosphotransferase enzyme family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D LG3211_2868 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LG3211_1754 era; GTP-binding protein Era K03595 era; GTPase
C LG3211_3259 cgtA; obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LG3211_1881 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C LG3211_2216 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
C LG3211_4095 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C LG3211_3776 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LG3211_0695 rsuA; 16S rRNA pseudouridine 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D LG3211_3894 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LG3211_4936 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LG3211_0694 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D LG3211_3476 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LG3211_3923 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LG3211_5108 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LG3211_4084 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LG3211_4088 yraL; 16S rRNA 2'-O-ribose C1402 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D LG3211_3296 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LG3211_1530 rrmJ; 23S rRNA 2'-O-ribose U2552 methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D LG3211_3355 rlmH; rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LG3211_0078 methyltransferase domain protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D LG3211_1665 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D LG3211_1636 hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D LG3211_3879 mtfA; 23S rRNA 2'-O-ribose C2498 methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D LG3211_2896 rlmN; 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D LG3211_1760 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LG3211_3130 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D LG3211_2785 23S rRNA pseudouridine 2605 synthase domain protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LG3211_1356 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LG3211_2935 yceC; 23S rRNA pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D LG3211_4036 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LG3211_5348 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D LG3211_3102 pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D LG3211_4662 putative ribosomal small subunit pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D LG3211_1031 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C LG3211_4142 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LG3211_1053 alpha-L-glutamate ligase, RimK family protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C LG3211_3229 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C LG3211_3133 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C LG3211_4360 ycaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C LG3211_0812 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C LG3211_2179 prmB; (glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C LG3211_2719 araC-like ligand binding domain protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C LG3211_1753 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LG3211_2937 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C LG3211_3349 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C LG3211_1223 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C LG3211_1431 ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C LG3211_3128 helicase conserved C-terminal domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C LG3211_1754 era; GTP-binding protein Era K03595 era; GTPase
C LG3211_0579 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LG3211_2891 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
C LG3211_3259 cgtA; obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C LG3211_1536 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C LG3211_4946 protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LG3211_4327 hddC3; HD domain-containing protein 3 K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LG3211_0958 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LG3211_2218 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LG3211_2215 rimP; ribosome maturation domain protein K09748 rimP; ribosome maturation factor RimP
C LG3211_1421 S4 domain protein K14761 rlbA; ribosome-associated protein
C LG3211_3376 oligomerization domain protein K09710 ybeB; ribosome-associated protein
C LG3211_3627 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C LG3211_1529 CRS1 / YhbY domain protein K07574 yhbY; RNA-binding protein
C LG3211_3346 hypothetical protein K09889 yjgA; ribosome-associated protein
C LG3211_1236 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C LG3211_3784 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase
C LG3211_1731 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024