+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lactococcus lactis subsp. lactis KLDS 4.0325

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D P620_02980 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E P620_01505 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P620_04560 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P620_05840 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D P620_06085 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P620_13215 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P620_01210 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P620_08920 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P620_10845 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D P620_02980 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D P620_02985 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E P620_01505 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P620_04560 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P620_06090 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E P620_02215 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E P620_05840 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E P620_04330 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E P620_03590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E P620_02625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E P620_12595 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E P620_10280 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E P620_03225 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E P620_04555 excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E P620_06080 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P620_12595 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E P620_02625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F P620_10180 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F P620_10175 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P620_12010 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F P620_03600 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F P620_11035 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F P620_00075 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E P620_13095 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E P620_09260 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E P620_13085 DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E P620_04630 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E P620_04635 exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E P620_02785 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P620_12515 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E P620_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E P620_09305 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E P620_02425 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E P620_02830 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P620_05630 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P620_12885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E P620_02625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E P620_06080 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P620_02390 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E P620_10900 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E P620_12865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E P620_09860 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E P620_06700 recA; recombinase RecA K03553 recA; recombination protein RecA E P620_02220 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E P620_14895 recA; recombinase RecA K03553 recA; recombination protein RecA E P620_15045 recA; recombinase RecA K03553 recA; recombination protein RecA E P620_13080 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P620_13075 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P620_05155 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E P620_11030 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E P620_07570 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E P620_07575 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E P620_06700 recA; recombinase RecA K03553 recA; recombination protein RecA E P620_02220 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E P620_14895 recA; recombinase RecA K03553 recA; recombination protein RecA E P620_15045 recA; recombinase RecA K03553 recA; recombination protein RecA E P620_11985 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E P620_11415 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E P620_13275 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P620_03590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P620_00215 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E P620_02145 recombination protein RecR K06187 recR; recombination protein RecR E P620_04660 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E P620_03045 Holliday junction resolvase RecU K03700 recU; recombination protein U E P620_13080 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P620_13075 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E P620_00020 addA; helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E P620_00015 rexB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E P620_07570 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E P620_07575 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F P620_06035 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P620_04915 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F P620_06995 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F P620_02815 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F P620_04760 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F P620_12445 recombinase RecT K07455 recT; recombination protein RecT F P620_08975 recombinase RecT K07455 recT; recombination protein RecT F P620_03590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F P620_00215 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F P620_02145 recombination protein RecR K06187 recR; recombination protein RecR F P620_02625 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F P620_10225 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F P620_10280 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F P620_03225 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D P620_11800 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D P620_03360 DNA polymerase K03502 umuC; DNA polymerase V D P620_14885 DNA polymerase K03502 umuC; DNA polymerase V C Other SOS response factors D P620_06700 recA; recombinase RecA K03553 recA; recombination protein RecA D P620_02220 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D P620_14895 recA; recombinase RecA K03553 recA; recombination protein RecA D P620_15045 recA; recombinase RecA K03553 recA; recombination protein RecA D P620_04660 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D P620_02390 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P620_10900 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P620_12865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P620_12805 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D P620_06515 ATP-dependent helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D P620_10355 3'-5' exonuclease K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D P620_06085 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P620_13215 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P620_01210 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P620_08920 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P620_10845 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P620_05600 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P620_05595 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D P620_04045 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024