+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lactococcus lactis subsp. cremoris UC509.9
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D uc509_0822 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C uc509_0371 era; GTP-binding protein Era K03595 era; GTPase
C uc509_1533 obgE; GTPase, Obg/CgtA family K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C uc509_0776 nusA; Transcription antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C uc509_0688 nusB; transcription termination protein nusB K03625 nusB; transcription antitermination protein NusB
C uc509_2085 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D uc509_2211 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D uc509_0684 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D uc509_1850 sunL; 16S rRNA m(5)C 967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D uc509_1406 rsmC; 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D uc509_2140 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D uc509_0084 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D uc509_1357 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D uc509_0897 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D uc509_0426 Tetrapyrrole (Corrin/Porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D uc509_0891 rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D uc509_1958 rrmA; 23S rRNA m(1)G 745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D uc509_1342 23S rRNA m(1)G 745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D uc509_1832 trmH; 23S rRNA Gm2251 methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D uc509_2114 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D uc509_0257 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D uc509_0176 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D uc509_0891 rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D uc509_1198 23S rRNA m(5)U 1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D uc509_1289 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D uc509_0384 rluE; Ribosomal large subunit pseudouridine synthase D, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D uc509_1050 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D uc509_2092 rluE; ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D uc509_1376 rluE; ribosomal large subunit pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C uc509_0302 Ribosomal-protein-S18-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C uc509_0303 rimI2; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C uc509_1520 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C uc509_0083 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C uc509_0822 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C uc509_0125 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C uc509_1808 rnc; ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C uc509_0369 rheA; ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C uc509_0443 rheA; ATP-dependent RNA helicase, DEAD/DEAH box family K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C uc509_0371 era; GTP-binding protein Era K03595 era; GTPase
C uc509_1904 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C uc509_0763 engA; GTP-binding protein EngA K03977 engA; GTPase
C uc509_1533 obgE; GTPase, Obg/CgtA family K03979 obgE; GTPase [EC:3.6.5.-]
C uc509_1310 rbgA; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A
C uc509_0225 hflX; GTP-binding protein hflX K03665 hflX; GTPase
C uc509_0223 GTP-binding protein YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C uc509_0601 RNA-binding protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C uc509_0086 relA; GTP pyrophosphokinase / Guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C uc509_0781 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C uc509_0775 Hypothetical protein K09748 rimP; ribosome maturation factor RimP
C uc509_1940 hypothetical protein K14761 rlbA; ribosome-associated protein
C uc509_0230 hypothetical protein K09710 ybeB; ribosome-associated protein
C uc509_1086 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C uc509_0226 RNA binding protein, CRS1/YhbY family K07574 yhbY; RNA-binding protein
C uc509_0651 yfiA; putative sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C uc509_0007 GTP-dependent nucleic acid-binding protein, probable translation factor K06942 ychF; ribosome-binding ATPase
C uc509_1541 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024