+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leishmania major

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LMJF_13_0500 putative RNA helicase K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] D LMJF_33_0470 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMJF_18_0480 putative uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMJF_28_2140 putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMJF_34_2170 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E LMJF_09_0050 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LMJF_16_0680 apurinic/apyrimidinic endonuclease-redox protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F LMJF_33_1690 putative DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F LMJF_25_1410 putative DNA polymerase delta subunit 2 K02328 POLD2; DNA polymerase delta subunit 2 E DNA polymerase epsilon complex F LMJF_35_4360 putative DNA polymerase epsilon catalytic subunit K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F LMJF_35_1790 putative DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] E LMJF_15_1450 putative proliferative cell nuclear antigen (PCNA) K04802 PCNA; proliferating cell nuclear antigen E LMJF_27_0250 putative flap endonuclease-1 (FEN-1) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E LMJF_30_3440 putative DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors E LMJF_08_0890 mitochondrial DNA polymerase beta K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-] E LMJF_08_0900 putative mitochondrial DNA polymerase beta-PAK K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-] D Other BER factors E LMJF_33_3050 TDBP1; tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-] E LMJF_29_0640 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F LMJF_35_3450 putative DNA-repair protein K10838 XPC; xeroderma pigmentosum group C-complementing protein F LMJF_30_3300 UV excision repair RAD23-like protein K10839 RAD23; UV excision repair protein RAD23 E Cul4-DDB2 complex F LMJF_21_0023 putative ring-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F LMJF_24_1610 putative ring-box protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E NER4 complex F LMJF_25_0740 putative DNA repair protein K15083 RAD16; DNA repair protein RAD16 D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F LMJF_31_2610 RPOIILS; RNA polymerase II largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F LMJF_31_0160 putative DNA-directed RNA polymerase II subunit 2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F LMJF_29_0140 DNA-directed RNA polymerase I-like protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F LMJF_18_0780 putative DNA-directed RNA polymerases II K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F LMJF_34_0890 putative DNA-directed RNA polymerase subunit K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F LMJF_32_1280 putative RNA polymerase-like protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F LMJF_28_0810 putative RNA polymerase B subunit RPB8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F LMJF_28_0120 putative DNA-direcetd RNA polymerase II,subunit 9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F LMJF_13_1120 putative DNA-directed RNA polymerase II 8.2 Kdpolypeptide K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F LMJF_25_1315 DNA-directed RNA polymerase II K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F LMJF_27_1550 DNA-directed RNA polymerase II-like protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 E Cul4-CSA complex F LMJF_21_0023 putative ring-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F LMJF_24_1610 putative ring-box protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E Other TCR factor F LMJF_14_0840 putative DNA excision repair protein K10841 ERCC6; DNA excision repair protein ERCC-6 D TFIIH complex E LMJF_32_3920 putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E LMJF_24_2280 putative DNA excision repair protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E LMJF_24_1680 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E LMJF_36_0800 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 D RPA (replication factor A) E LMJF_28_1820 RPA1; putative replication factor A, 51kDa subunit K07466 RFA1; replication factor A1 E LMJF_15_0270 putative replication Factor A 28 kDa subunit K10739 RFA2; replication factor A2 D Other NER factors E LMJF_08_0140 putative DNA repair protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E LMJF_35_3590 putative DNA repair protein RAD2 K10846 ERCC5; DNA excision repair protein ERCC-5 E LMJF_30_3440 putative DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] E LMJF_10_0050 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19 C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LMJF_33_0410 putative DNA mismatch repair protein K08735 MSH2; DNA mismatch repair protein MSH2 E LMJF_15_1420 putative mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3 D MutL homologs E LMJF_24_1420 putative mismatch repair protein K08734 MLH1; DNA mismatch repair protein MLH1 E LMJF_35_1660 mismatch repair protein K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E LMJF_33_1690 putative DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E LMJF_25_1410 putative DNA polymerase delta subunit 2 K02328 POLD2; DNA polymerase delta subunit 2 D RPA (replication factor A) E LMJF_28_1820 RPA1; putative replication factor A, 51kDa subunit K07466 RFA1; replication factor A1 E LMJF_15_0270 putative replication Factor A 28 kDa subunit K10739 RFA2; replication factor A2 D RFC (replication factor C) E LMJF_24_0990 putative replication factor C, subunit 1 K10754 RFC1; replication factor C subunit 1 E LMJF_30_2630 putative replication factor C, subunit 2 K10755 RFC2_4; replication factor C subunit 2/4 E LMJF_27_0550 putative replication factor C, subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 E LMJF_36_6710 putative replication factor C, subunit 5 K10756 RFC3_5; replication factor C subunit 3/5 E LMJF_35_3250 putative replication factor C, subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E LMJF_15_1450 putative proliferative cell nuclear antigen (PCNA) K04802 PCNA; proliferating cell nuclear antigen E LMJF_23_1270 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E LMJF_30_3440 putative DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E LMJF_27_1890 putative endo/exonuclease Mre11 K10865 MRE11; double-strand break repair protein MRE11 E LMJF_28_0530 RAD50 DNA repair-like protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA1-core complex D BRCA1-A complex E LMJF_26_2430 putative metallopeptidase K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-] D BRCA1-B complex E LMJF_29_1790 hypothetical protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 D BRCA1-C complex E LMJF_27_1890 putative endo/exonuclease Mre11 K10865 MRE11; double-strand break repair protein MRE11 E LMJF_28_0530 RAD50 DNA repair-like protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA complex E LMJF_28_0550 RAD51; putative RAD51 protein K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E LMJF_28_0550 RAD51; putative RAD51 protein K04482 RAD51; DNA repair protein RAD51 D Rad52 family proteins D Rad54 family proteins E LMJF_24_0760 putative DNA repair and recombination protein RAD54 K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-] D RecQ family DNA helicases E LMJF_24_1530 putative ATP-dependent DEAD/H DNA helicase RecQ K10901 BLM; bloom syndrome protein [EC:5.6.2.4] D Bloom's syndrome complex (BTR) E LMJF_24_1530 putative ATP-dependent DEAD/H DNA helicase RecQ K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E LMJF_28_1780 putative DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E LMJF_36_3200 putative DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D RPA (replication factor A) E LMJF_28_1820 RPA1; putative replication factor A, 51kDa subunit K07466 RFA1; replication factor A1 E LMJF_15_0270 putative replication Factor A 28 kDa subunit K10739 RFA2; replication factor A2 D Protein phosphatase 4 E LMJF_32_3040 putative protein phosphatase 2A catalytic subunit K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] E LMJF_18_0700 hypothetical protein K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1 D AP-5 complex D SMC5-SMC6 complex D Other HR factors E LMJF_25_1330 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-] E LMJF_32_2540 hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-] E LMJF_15_0500 katanin-like protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] E LMJF_36_0710 hypothetical protein K23456 CFAP410; cilla- and flagella-associated protein E LMJF_32_1310 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] C NHEJ (non-homologous end-joining) D DNA-PK complex E LMJF_29_1050 putative KU70 protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1 E LMJF_30_0340 putative KU80 protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2 D MRX complex E LMJF_27_1890 putative endo/exonuclease Mre11 K10865 MRE11; double-strand break repair protein MRE11 E LMJF_28_0530 RAD50 DNA repair-like protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D DNA Ligase 4 complex D X-family DNA polymerases E LMJF_08_0890 mitochondrial DNA polymerase beta K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-] E LMJF_08_0900 putative mitochondrial DNA polymerase beta-PAK K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-] D Other NHEJ factors E LMJF_29_0640 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) E LMJF_24_1530 putative ATP-dependent DEAD/H DNA helicase RecQ K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E LMJF_28_1780 putative DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E LMJF_36_3200 putative DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D FANCD2-I complex D Downstream FA components D Other FA pathway factors E LMJF_28_0550 RAD51; putative RAD51 protein K04482 RAD51; DNA repair protein RAD51 E LMJF_35_0870 hypothetical protein K11137 TELO2; telomere length regulation protein C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LMJF_21_0630 putative DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7] D LMJF_21_0620 putative DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7] D LMJF_28_1420 putative DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] D LMJF_28_1430 putative DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] C B-family DNA polymerases D LMJF_23_1330 putative DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7] C A-family DNA polymerase C Rad6 epistasis group D LMJF_22_0610 ubiquitin-conjugating enzyme-like protein K10574 UBE2B; ubiquitin-conjugating enzyme E2 B [EC:2.3.2.23] D LMJF_13_1580 ubiquitin-conjugating enzyme-like protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D LMJF_04_0680 putative ubiquitin-conjugating enzyme E2 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D LMJF_15_1450 putative proliferative cell nuclear antigen (PCNA) K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex D LMJF_30_2630 putative replication factor C, subunit 2 K10755 RFC2_4; replication factor C subunit 2/4 D LMJF_27_0550 putative replication factor C, subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 D LMJF_36_6710 putative replication factor C, subunit 5 K10756 RFC3_5; replication factor C subunit 3/5 D LMJF_35_3250 putative replication factor C, subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex D LMJF_35_0870 hypothetical protein K11137 TELO2; telomere length regulation protein C BAG6-UBL4A-GET4 complex C Other check point factors D LMJF_11_0350 putative 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon D LMJF_36_3210 14-3-3 protein-like protein K06630 YWHAE; 14-3-3 protein epsilon D LMJF_21_1565 putative serine/threonine-protein kinase K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1] D LMJF_34_3350 ATPase-like protein K12196 VPS4; vacuolar protein-sorting-associated protein 4 D LMJF_29_2500 VPS4; vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases D LMJF_33_0030 hypothetical protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7] C Nucleases D LMJF_36_2330 putative endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-] C Helicases C PSO4 complex D LMJF_27_2480 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D LMJF_17_0710 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D LMJF_36_4820 hypothetical protein K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D LMJF_06_0560 DUT; putative deoxyuridine triphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LMJF_28_0890 putative ribonucleoside-diphosphate reductase large chain K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D LMJF_22_1290 putative ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] D LMJF_27_2050 putative ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LMJF_33_0470 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMJF_18_0480 putative uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMJF_28_2140 putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMJF_09_0050 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D LMJF_06_0560 DUT; putative deoxyuridine triphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024