+F Repair protein KO
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DNA Repair and Recombination Proteins - Listeria monocytogenes CLIP 80459 (serotype 4b)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Lm4b_01016 Putative methylated-DNA-protein-cystein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Lm4b_00614 Putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Lm4b_00408 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Lm4b_01232 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Lm4b_00947 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Lm4b_01703 Putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Lm4b_01911 nth; Putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Lm4b_00157 Putative ATP dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Lm4b_02338 Hypothetical protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01256 Putative 8-oxo-dGTPase (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01632 Putative MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01682 Putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01705 Putative deoxyuridine triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Lm4b_01016 Putative methylated-DNA-protein-cystein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Lm4b_00082 Putative Ada protein (O6-methylguanine-DNA methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Lm4b_02270 Putative methylphosphotriester-DNA alkyltransferase and transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D Lm4b_02269 Putative O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Lm4b_00614 Putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Lm4b_00408 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Lm4b_01232 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Lm4b_00947 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Lm4b_01703 Putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Lm4b_01650 Putative dna-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Lm4b_01575 mutM; Putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Lm4b_01911 nth; Putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Lm4b_01798 Putative 3'-exo-deoxyribonuclease exoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Lm4b_01459 Putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E Lm4b_01535 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Lm4b_01576 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Lm4b_02457 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A
E Lm4b_02458 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B
E Lm4b_01239 uvrC; Putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E Lm4b_01773 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Lm4b_01576 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Lm4b_00281 rpoB; RNA polymerase (beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Lm4b_00282 rpoC; RNA polymerase (beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Lm4b_02573 rpoA; Putative RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Lm4b_02528 Putative RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
F Lm4b_01842 Hypothetical protein of unknown function K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Lm4b_00212 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Lm4b_01412 mutS; DNA mismatch repair (recognition) K03555 mutS; DNA mismatch repair protein MutS
E Lm4b_01237 Putative MutS protein (MutS2) K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E Lm4b_01413 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Lm4b_01369 Putative exodeoxyribonuclease VII (large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Lm4b_01370 Putative exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Lm4b_01585 dnaE; Putative DNA polymerase III (alpha subunit) DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Lm4b_01328 polC; Putative DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E Lm4b_00002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Lm4b_01491 Hypothetical protein of unknown function K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Lm4b_00163 Putative DNA polymerase III (delta' subunit) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Lm4b_02678 dnaX; Putative DNA polymerase III (gamma and tau subunits) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Lm4b_01773 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Lm4b_02492 Putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E Lm4b_00054 ssb; Putative single-strand binding protein (SSB) K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Lm4b_01519 Putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E Lm4b_01407 recA; Recombination protein recA K03553 recA; recombination protein RecA
E Lm4b_01543 ruvA; Putative Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA
E Lm4b_01542 ruvB; Putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Lm4b_01840 priA; Putative primosomal replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E Lm4b_01656 Putative ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Lm4b_01657 Putative exonucleases SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Lm4b_01407 recA; Recombination protein recA K03553 recA; recombination protein RecA
E Lm4b_00253 Putative DNA repair protein Sms K04485 radA; DNA repair protein RadA/Sms
E Lm4b_00005 RecF; RecF protein K03629 recF; DNA replication and repair protein RecF
E Lm4b_01827 Putative ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Lm4b_01535 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Lm4b_01470 Putative RecO protein K03584 recO; DNA repair protein RecO (recombination protein O)
E Lm4b_02676 recR; Putative recombination protein recR K06187 recR; recombination protein RecR
E Lm4b_01377 recN; DNA repair and genetic recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Lm4b_01908 recU; Putative RecU protein K03700 recU; recombination protein U
E Lm4b_01543 ruvA; Putative Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA
E Lm4b_01542 ruvB; Putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E Lm4b_02294 Putative ATP-dependent deoxyribonuclease (subunit A) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Lm4b_02295 addB; Putative ATP-dependent deoxyribonuclease (subunit B) K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E Lm4b_01656 Putative ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Lm4b_01657 Putative exonucleases SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Lm4b_00007 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Lm4b_00006 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Lm4b_01285 topA; Putative DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Lm4b_01951 hup; Putative non-specific DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Lm4b_01535 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Lm4b_01470 Putative RecO protein K03584 recO; DNA repair protein RecO (recombination protein O)
F Lm4b_02676 recR; Putative recombination protein recR K06187 recR; recombination protein RecR
F Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F Lm4b_01960 recS; Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Lm4b_02732 Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Lm4b_02457 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A
F Lm4b_02458 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Lm4b_01987 Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV)) K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Lm4b_02649 Putative UV-damage repair protein K03502 umuC; DNA polymerase V
C Other SOS response factors
D Lm4b_01407 recA; Recombination protein recA K03553 recA; recombination protein RecA
D Lm4b_01311 Putative SOS response regulator lexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Lm4b_01377 recN; DNA repair and genetic recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Lm4b_02492 Putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Lm4b_00054 ssb; Putative single-strand binding protein (SSB) K03111 ssb; single-strand DNA-binding protein
D Lm4b_01707 Putative hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D Lm4b_01236 Putative DNA polymerase beta K02347 polX; DNA polymerase (family X)
C DNA helicases
D Lm4b_01916 dinG; Putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D Lm4b_02338 Hypothetical protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01256 Putative 8-oxo-dGTPase (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01632 Putative MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01682 Putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lm4b_01705 Putative deoxyuridine triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Lm4b_02180 Putative ribonucleoside-diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Lm4b_02179 Putative ribonucleoside-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D Lm4b_01586 Hypothetical protein of unknown function K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024