+F Repair protein KO #

  DNA Repair and Recombination Proteins - Listeria monocytogenes CLIP 80459 (serotype 4b)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Lm4b_01016 Putative methylated-DNA-protein-cystein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Lm4b_00614 Putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Lm4b_00408 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Lm4b_01232 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Lm4b_00947 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Lm4b_01703 Putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Lm4b_01911 nth; Putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Lm4b_00157 Putative ATP dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Lm4b_02338 Hypothetical protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01256 Putative 8-oxo-dGTPase (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01632 Putative MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01682 Putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01705 Putative deoxyuridine triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Lm4b_01016 Putative methylated-DNA-protein-cystein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Lm4b_00082 Putative Ada protein (O6-methylguanine-DNA methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Lm4b_02270 Putative methylphosphotriester-DNA alkyltransferase and transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D Lm4b_02269 Putative O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Lm4b_00614 Putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Lm4b_00408 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Lm4b_01232 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Lm4b_00947 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Lm4b_01703 Putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Lm4b_01650 Putative dna-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Lm4b_01575 mutM; Putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Lm4b_01911 nth; Putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Lm4b_01798 Putative 3'-exo-deoxyribonuclease exoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Lm4b_01459 Putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Lm4b_01535 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Lm4b_01576 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Lm4b_02457 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A E Lm4b_02458 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B E Lm4b_01239 uvrC; Putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E Lm4b_01773 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Lm4b_01576 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Lm4b_00281 rpoB; RNA polymerase (beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Lm4b_00282 rpoC; RNA polymerase (beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Lm4b_02573 rpoA; Putative RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Lm4b_02528 Putative RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F Lm4b_01842 Hypothetical protein of unknown function K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Lm4b_00212 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Lm4b_01412 mutS; DNA mismatch repair (recognition) K03555 mutS; DNA mismatch repair protein MutS E Lm4b_01237 Putative MutS protein (MutS2) K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Lm4b_01413 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Lm4b_01369 Putative exodeoxyribonuclease VII (large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Lm4b_01370 Putative exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Lm4b_01585 dnaE; Putative DNA polymerase III (alpha subunit) DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Lm4b_01328 polC; Putative DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E Lm4b_00002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Lm4b_01491 Hypothetical protein of unknown function K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Lm4b_00163 Putative DNA polymerase III (delta' subunit) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Lm4b_02678 dnaX; Putative DNA polymerase III (gamma and tau subunits) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Lm4b_01773 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Lm4b_02492 Putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Lm4b_00054 ssb; Putative single-strand binding protein (SSB) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Lm4b_01519 Putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Lm4b_01407 recA; Recombination protein recA K03553 recA; recombination protein RecA E Lm4b_01543 ruvA; Putative Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E Lm4b_01542 ruvB; Putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Lm4b_01840 priA; Putative primosomal replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Lm4b_01656 Putative ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E Lm4b_01657 Putative exonucleases SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Lm4b_01407 recA; Recombination protein recA K03553 recA; recombination protein RecA E Lm4b_00253 Putative DNA repair protein Sms K04485 radA; DNA repair protein RadA/Sms E Lm4b_00005 RecF; RecF protein K03629 recF; DNA replication and repair protein RecF E Lm4b_01827 Putative ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Lm4b_01535 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Lm4b_01470 Putative RecO protein K03584 recO; DNA repair protein RecO (recombination protein O) E Lm4b_02676 recR; Putative recombination protein recR K06187 recR; recombination protein RecR E Lm4b_01377 recN; DNA repair and genetic recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Lm4b_01908 recU; Putative RecU protein K03700 recU; recombination protein U E Lm4b_01543 ruvA; Putative Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E Lm4b_01542 ruvB; Putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E Lm4b_02294 Putative ATP-dependent deoxyribonuclease (subunit A) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Lm4b_02295 addB; Putative ATP-dependent deoxyribonuclease (subunit B) K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E Lm4b_01656 Putative ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E Lm4b_01657 Putative exonucleases SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Lm4b_00007 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Lm4b_00006 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Lm4b_01285 topA; Putative DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Lm4b_01951 hup; Putative non-specific DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Lm4b_01535 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Lm4b_01470 Putative RecO protein K03584 recO; DNA repair protein RecO (recombination protein O) F Lm4b_02676 recR; Putative recombination protein recR K06187 recR; recombination protein RecR F Lm4b_01772 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Lm4b_01960 recS; Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Lm4b_02732 Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Lm4b_02457 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A F Lm4b_02458 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Lm4b_01987 Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV)) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Lm4b_02649 Putative UV-damage repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D Lm4b_01407 recA; Recombination protein recA K03553 recA; recombination protein RecA D Lm4b_01311 Putative SOS response regulator lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Lm4b_01377 recN; DNA repair and genetic recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Lm4b_02492 Putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Lm4b_00054 ssb; Putative single-strand binding protein (SSB) K03111 ssb; single-strand DNA-binding protein D Lm4b_01707 Putative hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Lm4b_01236 Putative DNA polymerase beta K02347 polX; DNA polymerase (family X) C DNA helicases D Lm4b_01916 dinG; Putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Lm4b_02338 Hypothetical protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01256 Putative 8-oxo-dGTPase (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01632 Putative MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01682 Putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lm4b_01705 Putative deoxyuridine triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Lm4b_02180 Putative ribonucleoside-diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Lm4b_02179 Putative ribonucleoside-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Lm4b_01586 Hypothetical protein of unknown function K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024