+F Repair protein KO #

  DNA Repair and Recombination Proteins - Listeria monocytogenes HCC23 (serotype 4a)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LMHCC_1626 methylated-dna--protein-cysteine methyltransferase (6-o-methylguanine-dna methyltransferase) (mgmt) (o-6-methylguanine-dna-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMHCC_2043 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMHCC_2246 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMHCC_1426 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMHCC_1694 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LMHCC_0875 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMHCC_0663 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LMHCC_2482 helicase c2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LMHCC_1327 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0231 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0942 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0897 ytkD; nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0873 deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LMHCC_1626 methylated-dna--protein-cysteine methyltransferase (6-o-methylguanine-dna methyltransferase) (mgmt) (o-6-methylguanine-dna-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMHCC_2602 Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LMHCC_0299 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D LMHCC_0300 methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase) K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMHCC_2043 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMHCC_2246 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMHCC_1426 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMHCC_1694 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LMHCC_0875 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMHCC_0923 dna-3-methyladenine glycosylase 1 (dna-3-methyladenineglycosylase i) (3-methyladenine-dna glycosylase i, constitutive) (tagi) (dna-3-methyladenine glycosidase i) K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LMHCC_1005 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LMHCC_0663 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LMHCC_0780 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LMHCC_1120 probable endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E LMHCC_1044 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LMHCC_0806 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LMHCC_1004 polA; DNA polymerase type I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LMHCC_0112 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E LMHCC_0111 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E LMHCC_1419 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E LMHCC_0805 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMHCC_1004 polA; DNA polymerase type I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LMHCC_0806 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LMHCC_2373 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LMHCC_2372 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LMHCC_2928 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LMHCC_0036 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LMHCC_0730 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LMHCC_2429 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LMHCC_1166 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E LMHCC_1421 MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LMHCC_1165 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LMHCC_1210 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LMHCC_1209 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LMHCC_0994 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LMHCC_1250 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LMHCC_2662 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LMHCC_1089 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LMHCC_2477 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LMHCC_2830 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LMHCC_0806 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LMHCC_0805 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMHCC_2625 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E LMHCC_0075 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein E LMHCC_2970 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LMHCC_1060 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LMHCC_1171 recA; protein RecA K03553 recA; recombination protein RecA E LMHCC_1036 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LMHCC_1037 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LMHCC_0733 primosomal protein N (ATP-dependent helicase PriA)(Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LMHCC_0918 exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E LMHCC_0917 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LMHCC_1171 recA; protein RecA K03553 recA; recombination protein RecA E LMHCC_2407 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E LMHCC_2659 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E LMHCC_0746 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LMHCC_1044 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LMHCC_1110 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E LMHCC_2832 recR; recombination protein RecR K06187 recR; recombination protein RecR E LMHCC_1203 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E LMHCC_0666 recU; recombination protein U K03700 recU; recombination protein U E LMHCC_1036 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LMHCC_1037 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LMHCC_0276 addA; recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LMHCC_0275 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E LMHCC_0918 exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E LMHCC_0917 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LMHCC_2657 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LMHCC_2658 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LMHCC_1301 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LMHCC_0622 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LMHCC_2954 recombinase, phage RecT family protein K07455 recT; recombination protein RecT F LMHCC_1044 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LMHCC_1110 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F LMHCC_2832 recR; recombination protein RecR K06187 recR; recombination protein RecR F LMHCC_0806 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LMHCC_0614 ATP-dependent DNA helicase, recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMHCC_2768 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMHCC_0112 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F LMHCC_0111 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LMHCC_0586 DNA polymerase IV (Pol IV) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LMHCC_2860 ImpB/MucB/SamB family protein K03502 umuC; DNA polymerase V C Other SOS response factors D LMHCC_1171 recA; protein RecA K03553 recA; recombination protein RecA D LMHCC_1268 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LMHCC_1203 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LMHCC_2625 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LMHCC_0075 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D LMHCC_2970 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D LMHCC_0871 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D LMHCC_1422 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D LMHCC_0658 DnaQ family exonuclease/DinG family helicase, putative K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LMHCC_1327 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0231 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0942 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0897 ytkD; nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMHCC_0873 deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LMHCC_0389 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LMHCC_0390 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LMHCC_0993 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024