+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leuconostoc mesenteroides KFRI-MG

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LMES_1258 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMES_0734 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMES_1245 Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMES_1614 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LMES_0320 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMES_0834 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMES_0127 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LMES_1258 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMES_0734 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMES_1245 Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMES_1614 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMES_0187 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LMES_0457 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D AP endonucleases E LMES_1311 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LMES_1252 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LMES_0497 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LMES_0639 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LMES_0332 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E LMES_0331 Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B E LMES_0450 Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C E LMES_0495 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMES_1634 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMES_0639 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7] E LMES_0497 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LMES_1593 DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LMES_1592 DNA-directed RNA polymerase, beta' subunit/160 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LMES_0172 DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LMES_0445 DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LMES_1480 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LMES_0338 Transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LMES_1361 Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS E LMES_1485 MutS family ATPase K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LMES_1360 DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LMES_1389 Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LMES_1388 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LMES_0698 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LMES_0615 DNA polymerase III, alpha subunit (gram-positive type) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LMES_0002 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LMES_1372 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LMES_0225 DNA replication ATPase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LMES_1312 DNA polymerase III, epsilon subunit related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LMES_0220 DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LMES_0497 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LMES_0495 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMES_1634 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMES_1721 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LMES_1449 SSB-like protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LMES_0622 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LMES_0513 RecA/RadA recombinase K03553 recA; recombination protein RecA E LMES_0544 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E LMES_0540 Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LMES_1293 Primosomal protein N' (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LMES_0513 RecA/RadA recombinase K03553 recA; recombination protein RecA E LMES_0128 putative ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E LMES_0004 Recombinational DNA repair ATPase (RecF pathway) K03629 recF; DNA replication and repair protein RecF E LMES_0465 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LMES_1252 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LMES_0705 Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O) E LMES_0221 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR E LMES_1384 DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) E LMES_0578 Penicillin-binding protein-related factor A, putative recombinase K03700 recU; recombination protein U E LMES_0544 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E LMES_0540 Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LMES_1259 ATP-dependent exoDNAse (exonuclease V) beta subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LMES_1260 ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LMES_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LMES_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LMES_0671 DNA topoisomerase I, TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LMES_1073 nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LMES_1252 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LMES_0705 Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O) F LMES_0221 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR F LMES_0497 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LMES_1728 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMES_0332 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F LMES_0331 Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LMES_1371 Nucleotidyltransferase/DNA polymerase for DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LMES_0906 Nucleotidyltransferase/DNA polymerase for DNA repair K03502 umuC; DNA polymerase V C Other SOS response factors D LMES_0513 RecA/RadA recombinase K03553 recA; recombination protein RecA D LMES_1013 Transcriptional regulator, xre family K01356 lexA; repressor LexA [EC:3.4.21.88] D LMES_1384 DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) D LMES_1721 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LMES_1449 SSB-like protein K03111 ssb; single-strand DNA-binding protein D LMES_0598 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LMES_1162 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LMES_0320 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMES_0834 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMES_0127 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LMES_0199 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LMES_0201 Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LMES_1370 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024