+F Repair protein KO #

  DNA Repair and Recombination Proteins - Listeria monocytogenes SLCC5850 (serotype 1/2a)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LMOSLCC5850_1002 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMOSLCC5850_0581 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMOSLCC5850_0393 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC5850_1217 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC5850_0930 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LMOSLCC5850_1752 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMOSLCC5850_1956 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LMOSLCC5850_0150 DNA repair helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LMOSLCC5850_1303 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_1686 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_2373 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_1732 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_1754 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LMOSLCC5850_1002 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMOSLCC5850_0074 ada; Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LMOSLCC5850_2311 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D LMOSLCC5850_2310 ogt-2; methylated-DNA-protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LMOSLCC5850_0581 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LMOSLCC5850_0393 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC5850_1217 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LMOSLCC5850_0930 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LMOSLCC5850_1752 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LMOSLCC5850_1704 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LMOSLCC5850_1628 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LMOSLCC5850_1956 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LMOSLCC5850_1844 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LMOSLCC5850_1509 nfo; apurinic endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E LMOSLCC5850_1588 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LMOSLCC5850_1629 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LMOSLCC5850_2491 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E LMOSLCC5850_2492 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E LMOSLCC5850_1224 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E LMOSLCC5850_1821 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMOSLCC5850_1629 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LMOSLCC5850_0249 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LMOSLCC5850_0250 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LMOSLCC5850_2617 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LMOSLCC5850_2564 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LMOSLCC5850_1888 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LMOSLCC5850_0208 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LMOSLCC5850_1462 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E LMOSLCC5850_1222 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LMOSLCC5850_1463 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LMOSLCC5850_1420 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LMOSLCC5850_1421 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LMOSLCC5850_1638 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LMOSLCC5850_1379 polC; DNA polymerase III, alpha chain, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LMOSLCC5850_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LMOSLCC5850_1542 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LMOSLCC5850_0155 holB; DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LMOSLCC5850_2717 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LMOSLCC5850_1821 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LMOSLCC5850_0045 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E LMOSLCC5850_2527 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LMOSLCC5850_1571 recD; exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LMOSLCC5850_1457 recA; recombination protein K03553 recA; recombination protein RecA E LMOSLCC5850_1596 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E LMOSLCC5850_1595 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LMOSLCC5850_1886 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LMOSLCC5850_1710 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E LMOSLCC5850_1711 sbcD; putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LMOSLCC5850_1457 recA; recombination protein K03553 recA; recombination protein RecA E LMOSLCC5850_0227 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E LMOSLCC5850_0005 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E LMOSLCC5850_1873 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LMOSLCC5850_1588 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LMOSLCC5850_1520 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) E LMOSLCC5850_2715 recR; recombination protein K06187 recR; recombination protein RecR E LMOSLCC5850_1427 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LMOSLCC5850_1953 recU; recombination protein U K03700 recU; recombination protein U E LMOSLCC5850_1596 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E LMOSLCC5850_1595 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LMOSLCC5850_2334 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LMOSLCC5850_2335 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E LMOSLCC5850_2604 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E LMOSLCC5850_1710 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E LMOSLCC5850_1711 sbcD; putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LMOSLCC5850_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LMOSLCC5850_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LMOSLCC5850_1333 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LMOSLCC5850_1996 hup; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LMOSLCC5850_1588 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LMOSLCC5850_1520 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) F LMOSLCC5850_2715 recR; recombination protein K06187 recR; recombination protein RecR F LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LMOSLCC5850_2770 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMOSLCC5850_2004 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LMOSLCC5850_2491 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F LMOSLCC5850_2492 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LMOSLCC5850_2037 dinP; DNA-damage-inducible DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LMOSLCC5850_2688 putative DNA polymerase IV 2 K03502 umuC; DNA polymerase V C Other SOS response factors D LMOSLCC5850_1457 recA; recombination protein K03553 recA; recombination protein RecA D LMOSLCC5850_1361 lexA; SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LMOSLCC5850_1427 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LMOSLCC5850_0045 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LMOSLCC5850_2527 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LMOSLCC5850_1756 recX; regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D LMOSLCC5850_1221 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D LMOSLCC5850_1961 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LMOSLCC5850_1303 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_1686 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_2373 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_1732 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LMOSLCC5850_1754 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LMOSLCC5850_2222 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LMOSLCC5850_2221 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LMOSLCC5850_1639 RecJ-like phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024