+F Repair protein KO
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DNA Repair and Recombination Proteins - Listeria monocytogenes SLCC5850 (serotype 1/2a)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LMOSLCC5850_1002 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LMOSLCC5850_0581 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E LMOSLCC5850_0393 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LMOSLCC5850_1217 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LMOSLCC5850_0930 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E LMOSLCC5850_1752 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LMOSLCC5850_1956 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E LMOSLCC5850_0150 DNA repair helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D LMOSLCC5850_1303 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_1686 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_2373 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_1732 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_1754 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LMOSLCC5850_1002 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LMOSLCC5850_0074 ada; Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D LMOSLCC5850_2311 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D LMOSLCC5850_2310 ogt-2; methylated-DNA-protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LMOSLCC5850_0581 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E LMOSLCC5850_0393 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LMOSLCC5850_1217 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LMOSLCC5850_0930 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E LMOSLCC5850_1752 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LMOSLCC5850_1704 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E LMOSLCC5850_1628 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E LMOSLCC5850_1956 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E LMOSLCC5850_1844 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E LMOSLCC5850_1509 nfo; apurinic endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E LMOSLCC5850_1588 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E LMOSLCC5850_1629 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E LMOSLCC5850_2491 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E LMOSLCC5850_2492 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
E LMOSLCC5850_1224 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E LMOSLCC5850_1821 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LMOSLCC5850_1629 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F LMOSLCC5850_0249 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F LMOSLCC5850_0250 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F LMOSLCC5850_2617 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F LMOSLCC5850_2564 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
F LMOSLCC5850_1888 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F LMOSLCC5850_0208 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E LMOSLCC5850_1462 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E LMOSLCC5850_1222 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E LMOSLCC5850_1463 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E LMOSLCC5850_1420 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E LMOSLCC5850_1421 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E LMOSLCC5850_1638 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E LMOSLCC5850_1379 polC; DNA polymerase III, alpha chain, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E LMOSLCC5850_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E LMOSLCC5850_1542 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E LMOSLCC5850_0155 holB; DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E LMOSLCC5850_2717 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E LMOSLCC5850_1821 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LMOSLCC5850_0045 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E LMOSLCC5850_2527 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E LMOSLCC5850_1571 recD; exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E LMOSLCC5850_1457 recA; recombination protein K03553 recA; recombination protein RecA
E LMOSLCC5850_1596 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E LMOSLCC5850_1595 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LMOSLCC5850_1886 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E LMOSLCC5850_1710 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50
E LMOSLCC5850_1711 sbcD; putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E LMOSLCC5850_1457 recA; recombination protein K03553 recA; recombination protein RecA
E LMOSLCC5850_0227 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E LMOSLCC5850_0005 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
E LMOSLCC5850_1873 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E LMOSLCC5850_1588 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LMOSLCC5850_1520 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O)
E LMOSLCC5850_2715 recR; recombination protein K06187 recR; recombination protein RecR
E LMOSLCC5850_1427 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E LMOSLCC5850_1953 recU; recombination protein U K03700 recU; recombination protein U
E LMOSLCC5850_1596 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E LMOSLCC5850_1595 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E LMOSLCC5850_2334 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E LMOSLCC5850_2335 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E LMOSLCC5850_2604 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E LMOSLCC5850_1710 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50
E LMOSLCC5850_1711 sbcD; putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F LMOSLCC5850_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F LMOSLCC5850_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F LMOSLCC5850_1333 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F LMOSLCC5850_1996 hup; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F LMOSLCC5850_1588 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F LMOSLCC5850_1520 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O)
F LMOSLCC5850_2715 recR; recombination protein K06187 recR; recombination protein RecR
F LMOSLCC5850_1820 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F LMOSLCC5850_2770 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LMOSLCC5850_2004 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LMOSLCC5850_2491 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F LMOSLCC5850_2492 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D LMOSLCC5850_2037 dinP; DNA-damage-inducible DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D LMOSLCC5850_2688 putative DNA polymerase IV 2 K03502 umuC; DNA polymerase V
C Other SOS response factors
D LMOSLCC5850_1457 recA; recombination protein K03553 recA; recombination protein RecA
D LMOSLCC5850_1361 lexA; SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D LMOSLCC5850_1427 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D LMOSLCC5850_0045 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D LMOSLCC5850_2527 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D LMOSLCC5850_1756 recX; regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D LMOSLCC5850_1221 DNA polymerase X family protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D LMOSLCC5850_1961 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D LMOSLCC5850_1303 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_1686 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_2373 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_1732 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LMOSLCC5850_1754 dUTPase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LMOSLCC5850_2222 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LMOSLCC5850_2221 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D LMOSLCC5850_1639 RecJ-like phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024