+D GENES KO #

  KEGG Orthology (KO) - Candidatus Lokiarchaeum ossiferum

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:lob00010] D NEF87_003874 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D NEF87_002428 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D NEF87_000622 Fructose-bisphosphate aldolase class 2 K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D NEF87_004508 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D NEF87_004364 D-erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NEF87_004365 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D NEF87_004608 phosphoglycerate mutase GpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D NEF87_000615 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D NEF87_001960 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NEF87_004534 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D NEF87_001511 Phosphoenolpyruvate synthase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_000314 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D NEF87_000313 2-oxoacid:ferredoxin oxidoreductase 2, subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D NEF87_003609 hypothetical protein K04022 eutG; alcohol dehydrogenase D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D NEF87_001755 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005013 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005014 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_004163 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000084 Acetate--CoA ligase [ADP-forming] K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000598 Acetate--CoA ligase [ADP-forming] I subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_001575 Acetate--CoA ligase [ADP-forming] I subunit beta K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D NEF87_001703 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_000610 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_005007 hypothetical protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D NEF87_001238 hypothetical protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004107 Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:lob00020] D NEF87_000072 hypothetical protein K15230 aclA; ATP-citrate lyase alpha-subunit [EC:2.3.3.8] D NEF87_000073 hypothetical protein K15231 aclB; ATP-citrate lyase beta-subunit [EC:2.3.3.8] D NEF87_000071 hypothetical protein K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_000314 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D NEF87_000313 2-oxoacid:ferredoxin oxidoreductase 2, subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D NEF87_001405 hypothetical protein K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D NEF87_001404 Putative L(+)-tartrate dehydratase subunit beta K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D NEF87_004107 Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:lob00030] D NEF87_003874 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D NEF87_004251 hypothetical protein K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D NEF87_001467 putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D NEF87_003715 Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D NEF87_001004 hypothetical protein K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43] D NEF87_001666 ADP-dependent ribose-1-phosphate kinase K00852 rbsK; ribokinase [EC:2.7.1.15] D NEF87_000769 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_003641 Ribose 1,5-bisphosphate isomerase K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D NEF87_001374 Ribose 1,5-bisphosphate phosphokinase PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D NEF87_004244 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D NEF87_003215 hypothetical protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D NEF87_003216 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D NEF87_000933 Tungsten-containing formaldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_002215 Tungsten-containing aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_002296 Tungsten-containing aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_002403 Tungsten-containing aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_000081 Tungsten-containing aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_000184 Tungsten-containing aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_000744 Tungsten-containing aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D NEF87_003061 Glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D NEF87_000622 Fructose-bisphosphate aldolase class 2 K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D NEF87_002428 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:lob00040] D NEF87_003883 hypothetical protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25] D NEF87_000768 Uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D NEF87_002363 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D NEF87_000063 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D NEF87_004130 UDP-glucose 6-dehydrogenase AglM K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D NEF87_004251 hypothetical protein K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D NEF87_002615 Glycerol kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D NEF87_001100 L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D NEF87_003185 L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:lob00051] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004241 hypothetical protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D NEF87_004029 Bifunctional protein GlmU K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D NEF87_004319 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D NEF87_001100 L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D NEF87_003185 L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D NEF87_002428 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D NEF87_003534 hypothetical protein K27475 khk; ketohexokinase [EC:2.7.1.3] D NEF87_001217 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D NEF87_000622 Fructose-bisphosphate aldolase class 2 K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D NEF87_004508 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D NEF87_004320 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] C 00052 Galactose metabolism [PATH:lob00052] D NEF87_005007 hypothetical protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D NEF87_002181 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D NEF87_002397 hypothetical protein K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D NEF87_004450 GDP-mannose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D NEF87_004271 ADP-L-glycero-D-manno-heptose-6-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_002912 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D NEF87_003474 hypothetical protein K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D NEF87_004270 hypothetical protein K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D NEF87_003718 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D NEF87_002428 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D NEF87_003415 hypothetical protein K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] C 00053 Ascorbate and aldarate metabolism [PATH:lob00053] D NEF87_004130 UDP-glucose 6-dehydrogenase AglM K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D NEF87_002363 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D NEF87_000063 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31] C 00500 Starch and sucrose metabolism [PATH:lob00500] D NEF87_001109 Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D NEF87_000504 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D NEF87_000616 hypothetical protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D NEF87_003069 hypothetical protein K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20] D NEF87_004331 Bifunctional protein GlmU K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D NEF87_004524 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D NEF87_003921 1,4-alpha-glucan branching enzyme K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D NEF87_001504 Maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D NEF87_003415 hypothetical protein K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D NEF87_002452 hypothetical protein K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D NEF87_001722 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_003874 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lob00520] D NEF87_003038 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D NEF87_002321 Beta-galactosidase K15855 csxA; exo-1,4-beta-D-glucosaminidase [EC:3.2.1.165] D NEF87_001824 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_002319 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_002857 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_001245 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_000117 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_000282 Cellobiose 2-epimerase K01787 RENBP; N-acylglucosamine 2-epimerase [EC:5.1.3.8] D NEF87_004311 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D NEF87_004315 UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D NEF87_004317 GDP-mannose 4,6-dehydratase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetyl-alpha-D-glucosaminouronate 4-epimerase [EC:5.1.3.7 5.1.3.45] D NEF87_004340 hypothetical protein K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82] D NEF87_003990 GDP-L-fucose synthase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004130 UDP-glucose 6-dehydrogenase AglM K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D NEF87_002181 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D NEF87_002397 hypothetical protein K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D NEF87_004450 GDP-mannose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D NEF87_004271 ADP-L-glycero-D-manno-heptose-6-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D NEF87_004270 hypothetical protein K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D NEF87_003874 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D NEF87_004029 Bifunctional protein GlmU K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D NEF87_004241 hypothetical protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D NEF87_004319 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D NEF87_004320 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D NEF87_004331 Bifunctional protein GlmU K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D NEF87_004249 GDP-L-fucose synthase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10] C 00620 Pyruvate metabolism [PATH:lob00620] D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_000314 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D NEF87_000313 2-oxoacid:ferredoxin oxidoreductase 2, subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_003609 hypothetical protein K04022 eutG; alcohol dehydrogenase D NEF87_004534 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D NEF87_001755 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005013 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005014 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_004163 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000084 Acetate--CoA ligase [ADP-forming] K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000598 Acetate--CoA ligase [ADP-forming] I subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_001575 Acetate--CoA ligase [ADP-forming] I subunit beta K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D NEF87_001703 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_000610 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_004595 hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D NEF87_000492 hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D NEF87_001765 hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D NEF87_001718 hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D NEF87_004180 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D NEF87_001405 hypothetical protein K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D NEF87_001404 Putative L(+)-tartrate dehydratase subunit beta K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D NEF87_004107 Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D NEF87_001511 Phosphoenolpyruvate synthase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_001885 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D NEF87_003000 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D NEF87_003002 (R)-citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lob00630] D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_003612 hypothetical protein K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D NEF87_005035 Fused isobutyryl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D NEF87_005034 Fused isobutyryl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D NEF87_004946 Formate dehydrogenase, mitochondrial K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D NEF87_001161 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_001328 Pyrophosphatase PpaX K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_001417 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_001633 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_003369 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_004388 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_004390 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D NEF87_003640 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D NEF87_001353 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_001499 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_002112 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_004047 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_002432 glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D NEF87_002433 glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D NEF87_002430 putative aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_003579 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_004578 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_002431 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_003061 Glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D NEF87_003215 hypothetical protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D NEF87_003749 Kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:lob00640] D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D NEF87_001711 3-hydroxypropionyl-coenzyme A synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D NEF87_001755 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005013 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005014 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_004163 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000084 Acetate--CoA ligase [ADP-forming] K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000598 Acetate--CoA ligase [ADP-forming] I subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_001575 Acetate--CoA ligase [ADP-forming] I subunit beta K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D NEF87_001703 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_000610 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002594 Crotonobetainyl-CoA reductase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D NEF87_005035 Fused isobutyryl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D NEF87_005034 Fused isobutyryl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D NEF87_004059 Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:lob00650] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002965 3-hydroxypropionyl-coenzyme A dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D NEF87_002967 3-hydroxypropionyl-coenzyme A dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D NEF87_002594 Crotonobetainyl-CoA reductase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D NEF87_002604 hypothetical protein K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D NEF87_002603 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D NEF87_003612 hypothetical protein K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D NEF87_000837 hypothetical protein K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D NEF87_000838 hypothetical protein K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_000314 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D NEF87_000313 2-oxoacid:ferredoxin oxidoreductase 2, subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D NEF87_003601 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D NEF87_002607 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D NEF87_003003 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003040 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_000446 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003004 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:lob00660] D NEF87_003003 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003040 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_000446 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003004 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D NEF87_003007 Isopropylmalate/citramalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D NEF87_001442 Isopropylmalate/citramalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D NEF87_003008 Methanogen homoaconitase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D NEF87_003009 3-isopropylmalate/3-methylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D NEF87_003475 Homoisocitrate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:lob00562] D NEF87_005017 Fructose-1,6-bisphosphatase/inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D NEF87_002820 hypothetical protein K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D NEF87_000715 hypothetical protein K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D NEF87_005048 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D NEF87_004508 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:lob00190] D NEF87_001207 hypothetical protein K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D NEF87_003195 hypothetical protein K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D NEF87_001208 hypothetical protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D NEF87_003196 Ion-translocating oxidoreductase complex subunit C K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D NEF87_001209 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D NEF87_004140 V-type ATP synthase alpha chain K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D NEF87_004141 V-type ATP synthase beta chain K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D NEF87_004136 V-type ATP synthase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D NEF87_004142 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D NEF87_004138 hypothetical protein K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D NEF87_004143 hypothetical protein K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D NEF87_004135 ATP synthase subunit c K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D NEF87_003590 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:lob00710] D NEF87_003640 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D NEF87_004365 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D NEF87_004364 D-erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NEF87_000622 Fructose-bisphosphate aldolase class 2 K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D NEF87_003715 Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D NEF87_004508 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D NEF87_004251 hypothetical protein K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D NEF87_001467 putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D NEF87_001511 Phosphoenolpyruvate synthase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:lob00720] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_001511 Phosphoenolpyruvate synthase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D NEF87_001405 hypothetical protein K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D NEF87_001404 Putative L(+)-tartrate dehydratase subunit beta K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D NEF87_003194 Dihydromethanophenazine:CoB--CoM heterodisulfide reductase subunit D K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D NEF87_005038 Fatty acid oxidation complex subunit alpha K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_000314 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D NEF87_000313 2-oxoacid:ferredoxin oxidoreductase 2, subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D NEF87_000071 hypothetical protein K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D NEF87_000072 hypothetical protein K15230 aclA; ATP-citrate lyase alpha-subunit [EC:2.3.3.8] D NEF87_000073 hypothetical protein K15231 aclB; ATP-citrate lyase beta-subunit [EC:2.3.3.8] D NEF87_003343 Fatty acid oxidation complex subunit alpha K15019 K15019; 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116] D NEF87_002373 3-hydroxypropionyl-coenzyme A dehydratase K15019 K15019; 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116] D NEF87_000100 Fatty acid oxidation complex subunit alpha K15019 K15019; 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116] D NEF87_005034 Fused isobutyryl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D NEF87_005035 Fused isobutyryl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D NEF87_003197 Periplasmic nitrate reductase K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10] D NEF87_001147 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D NEF87_000994 Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D NEF87_002880 hypothetical protein K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D NEF87_002406 hypothetical protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D NEF87_004234 Acetyl-CoA decarbonylase/synthase complex subunit gamma K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245] D NEF87_003955 hypothetical protein K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245] D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:lob00680] D NEF87_000179 Formate dehydrogenase subunit beta K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D NEF87_003197 Periplasmic nitrate reductase K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10] D NEF87_001879 Acetyl-CoA decarbonylase/synthase complex subunit beta K00193 cdhC; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit beta [EC:2.3.1.169] D NEF87_004234 Acetyl-CoA decarbonylase/synthase complex subunit gamma K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245] D NEF87_003955 hypothetical protein K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245] D NEF87_002112 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_004047 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_003061 Glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D NEF87_001960 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NEF87_000622 Fructose-bisphosphate aldolase class 2 K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D NEF87_002428 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D NEF87_001004 hypothetical protein K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43] D NEF87_003201 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic K00205 fwdF; 4Fe-4S ferredoxin D NEF87_000190 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic K00205 fwdF; 4Fe-4S ferredoxin D NEF87_004808 Formylmethanofuran--tetrahydromethanopterin formyltransferase K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] D NEF87_002003 H(2)/formate:CoB-CoM heterodisulfide,ferredoxin reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_002030 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_003193 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_003198 H(2)/formate:CoB-CoM heterodisulfide,ferredoxin reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_004621 H(2)/formate:CoB-CoM heterodisulfide,ferredoxin reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_000187 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_001640 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_002004 H(2)/formate:CoB-CoM heterodisulfide,ferredoxin reductase subunit B2 K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_002031 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_003525 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_001641 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit C K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_002005 hypothetical protein K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_002032 H(2)/formate:CoB-CoM heterodisulfide,ferredoxin reductase subunit C1 K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_003202 H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit C K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_003526 hypothetical protein K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_000188 H(2)/formate:CoB-CoM heterodisulfide,ferredoxin reductase subunit C1 K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D NEF87_004857 Dihydromethanophenazine:CoB--CoM heterodisulfide reductase subunit D K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1] D NEF87_004080 Dihydromethanophenazine:CoB--CoM heterodisulfide reductase subunit D K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1] D NEF87_002002 F420-non-reducing hydrogenase iron-sulfur subunit D K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D NEF87_002029 F420-non-reducing hydrogenase vhc iron-sulfur subunit D K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D NEF87_003192 F420-non-reducing hydrogenase iron-sulfur subunit D K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D NEF87_004619 hypothetical protein K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D NEF87_000186 F420-non-reducing hydrogenase iron-sulfur subunit D K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D NEF87_001639 F420-non-reducing hydrogenase vhc subunit A K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5] D NEF87_001642 hypothetical protein K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5] D NEF87_002001 hypothetical protein K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5] D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_004608 phosphoglycerate mutase GpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D NEF87_000615 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D NEF87_002044 Glyoxylate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D NEF87_004707 hypothetical protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] D NEF87_003766 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D NEF87_003827 phosphoglycerate mutase GpmB K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D NEF87_004182 Malate dehydrogenase K05884 comC; L-2-hydroxycarboxylate dehydrogenase (NAD+) [EC:1.1.1.337] D NEF87_001443 Isopropylmalate/citramalate isomerase large subunit K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114] D NEF87_002612 L-aspartate/L-glutamate decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00910 Nitrogen metabolism [PATH:lob00910] D NEF87_000355 Hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D NEF87_004430 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004432 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004433 NADP-specific glutamate dehydrogenase A1 K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D NEF87_001353 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_001499 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_003529 Sulfide dehydrogenase subunit alpha K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D NEF87_004674 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D NEF87_002753 hypothetical protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:lob00920] D NEF87_003909 hypothetical protein K15553 ssuA; sulfonate transport system substrate-binding protein D NEF87_003912 Vitamin B12 import ATP-binding protein BtuD K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D NEF87_002039 Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D NEF87_002038 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D NEF87_002040 Phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D NEF87_002640 hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D NEF87_002849 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D NEF87_002848 Protein CysO K01738 cysK; cysteine synthase [EC:2.5.1.47] D NEF87_001977 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:lob00061] D NEF87_003611 hypothetical protein K02078 acpP; acyl carrier protein D NEF87_000934 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001311 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001312 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002424 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002425 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002595 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001758 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_003461 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004471 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004472 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000326 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000588 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:lob00071] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_001314 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D NEF87_002594 Crotonobetainyl-CoA reductase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D NEF87_000957 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D NEF87_001190 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D NEF87_000329 Crotonobetainyl-CoA reductase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D NEF87_001758 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_003461 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004471 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004472 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000326 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000588 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:lob00561] D NEF87_003061 Glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D NEF87_004070 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D NEF87_000904 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_002904 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_002905 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_000612 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_000937 lipid kinase YegS K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D NEF87_001346 hypothetical protein K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D NEF87_003718 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:lob00564] D NEF87_000905 Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D NEF87_003536 hypothetical protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D NEF87_004179 L-2-hydroxyglutarate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D NEF87_000813 Anaerobic glycerol-3-phosphate dehydrogenase subunit A1 K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D NEF87_003355 Anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D NEF87_000904 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_002904 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_002905 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_000612 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_000937 lipid kinase YegS K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D NEF87_001731 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D NEF87_003300 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D NEF87_004174 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D NEF87_000554 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D NEF87_000016 hypothetical protein K04019 eutA; ethanolamine utilization protein EutA D NEF87_000789 hypothetical protein K04019 eutA; ethanolamine utilization protein EutA D NEF87_000661 hypothetical protein K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D NEF87_001394 Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D NEF87_001411 hypothetical protein K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D NEF87_004813 Archaetidylinositol phosphate synthase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D NEF87_003745 Digeranylgeranylglyceryl phosphate synthase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D NEF87_002412 hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] D NEF87_000385 hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] D NEF87_004200 hypothetical protein K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism D NEF87_004079 D-lactate dehydrogenase (acceptor) K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] C 00600 Sphingolipid metabolism [PATH:lob00600] D NEF87_002912 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D NEF87_003718 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D NEF87_003038 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:lob00592] D NEF87_001314 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:lob00230] D NEF87_001236 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D NEF87_002276 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D NEF87_004222 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004244 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D NEF87_001091 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NEF87_004562 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NEF87_004638 Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D NEF87_004563 Phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NEF87_004564 Phosphoribosylformylglycinamidine synthase subunit PurL K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D NEF87_003997 Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D NEF87_003643 N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D NEF87_004567 Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D NEF87_003996 Argininosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D NEF87_001437 Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D NEF87_002854 hypothetical protein K11176 purO; IMP cyclohydrolase [EC:3.5.4.10] D NEF87_002751 Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D NEF87_001438 Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D NEF87_002274 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D NEF87_002638 Inosine/xanthosine triphosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D NEF87_000127 dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D NEF87_002244 Carbamoyl-phosphate synthase small chain K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NEF87_003944 NH(3)-dependent NAD(+) synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NEF87_004005 Carbamoyl-phosphate synthase small chain K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NEF87_002930 hypothetical protein K00527 rtpR; ribonucleoside-triphosphate reductase (thioredoxin) [EC:1.17.4.2] D NEF87_000376 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1] D NEF87_004850 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D NEF87_003671 hypothetical protein K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D NEF87_000614 Adenylosuccinate synthetase, organellar chromatophore K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D NEF87_002670 Nucleoside kinase K00856 ADK; adenosine kinase [EC:2.7.1.20] D NEF87_002500 Adenine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D NEF87_004614 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D NEF87_004615 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D NEF87_001444 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D NEF87_002796 Putative adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D NEF87_003341 hypothetical protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D NEF87_002039 Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D NEF87_002038 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D NEF87_004674 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:lob00240] D NEF87_000750 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D NEF87_000749 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D NEF87_001567 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D NEF87_002726 Aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D NEF87_004019 Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D NEF87_002248 Dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D NEF87_002247 Sulfhydrogenase 2 subunit gamma K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D NEF87_004735 Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D NEF87_004952 Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D NEF87_002634 Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D NEF87_002274 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D NEF87_003344 dTTP/UTP pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D NEF87_001357 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D NEF87_001852 Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D NEF87_004614 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D NEF87_004615 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D NEF87_002930 hypothetical protein K00527 rtpR; ribonucleoside-triphosphate reductase (thioredoxin) [EC:1.17.4.2] D NEF87_000013 hypothetical protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D NEF87_004455 putative thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D NEF87_003722 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NEF87_001658 Flavin-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D NEF87_002736 Flavin-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:lob00250] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_003737 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D NEF87_000285 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D NEF87_000668 Glutamyl-tRNA(Gln) amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D NEF87_001326 hypothetical protein K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D NEF87_000283 hypothetical protein K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D NEF87_000258 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D NEF87_000614 Adenylosuccinate synthetase, organellar chromatophore K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D NEF87_003996 Argininosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D NEF87_001567 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D NEF87_002726 Aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D NEF87_003529 Sulfide dehydrogenase subunit alpha K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D NEF87_004430 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004432 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004433 NADP-specific glutamate dehydrogenase A1 K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D NEF87_002492 2,5-dioxopentanoate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D NEF87_000294 2,5-dioxopentanoate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D NEF87_001353 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_001499 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_000750 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D NEF87_000749 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D NEF87_004563 Phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NEF87_001824 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_002319 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_002857 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_001091 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NEF87_004562 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:lob00260] D NEF87_001616 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001975 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001621 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_004083 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_003455 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D NEF87_004707 hypothetical protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] D NEF87_004518 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D NEF87_004708 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D NEF87_003467 hypothetical protein K01620 ltaE; threonine aldolase [EC:4.1.2.48] D NEF87_002112 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_004047 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_003061 Glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D NEF87_004608 phosphoglycerate mutase GpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D NEF87_000615 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D NEF87_002044 Glyoxylate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D NEF87_003766 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D NEF87_003827 phosphoglycerate mutase GpmB K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D NEF87_000165 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D NEF87_002432 glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D NEF87_002433 glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D NEF87_002430 putative aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_003579 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_004578 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_002431 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_000661 hypothetical protein K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D NEF87_001680 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D NEF87_001681 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D NEF87_000648 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D NEF87_000894 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D NEF87_003322 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D NEF87_002846 Tryptophan synthase beta chain 1 K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:lob00270] D NEF87_002849 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D NEF87_002848 Protein CysO K01738 cysK; cysteine synthase [EC:2.5.1.47] D NEF87_002080 LL-diaminopimelate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D NEF87_000006 Aromatic-amino-acid aminotransferase 2 K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D NEF87_004742 hypothetical protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D NEF87_002542 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D NEF87_000173 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D NEF87_002750 S-methyl-5'-thioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D NEF87_000886 5'-deoxyadenosine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D NEF87_003873 Putative methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D NEF87_000647 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] D NEF87_001654 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D NEF87_003700 S-inosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D NEF87_001616 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001975 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001621 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_004083 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_003455 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D NEF87_001977 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D NEF87_001976 O-succinylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D NEF87_001447 hypothetical protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001448 Putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_000894 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D NEF87_001680 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D NEF87_001681 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D NEF87_000648 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D NEF87_002044 Glyoxylate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:lob00280] D NEF87_001447 hypothetical protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001448 Putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_002289 Ketoisovalerate oxidoreductase subunit VorA K00186 vorA; 2-oxoisovalerate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.7] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002594 Crotonobetainyl-CoA reductase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D NEF87_000957 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D NEF87_001190 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D NEF87_000329 Crotonobetainyl-CoA reductase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D NEF87_001314 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D NEF87_005035 Fused isobutyryl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D NEF87_005034 Fused isobutyryl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_003601 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D NEF87_002607 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lob00290] D NEF87_003007 Isopropylmalate/citramalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D NEF87_001442 Isopropylmalate/citramalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D NEF87_003008 Methanogen homoaconitase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D NEF87_003009 3-isopropylmalate/3-methylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D NEF87_003475 Homoisocitrate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D NEF87_003003 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003040 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_000446 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003004 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D NEF87_003005 Ketol-acid reductoisomerase (NAD(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D NEF87_003006 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D NEF87_003039 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D NEF87_001447 hypothetical protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001448 Putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001885 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D NEF87_003000 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D NEF87_003002 (R)-citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:lob00300] D NEF87_003455 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D NEF87_001616 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001975 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001621 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_004083 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_001620 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D NEF87_001619 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D NEF87_002243 putative metallohydrolase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D NEF87_001617 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D NEF87_001615 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D NEF87_001618 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D NEF87_002655 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D NEF87_001443 Isopropylmalate/citramalate isomerase large subunit K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114] C 00310 Lysine degradation [PATH:lob00310] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_000894 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D NEF87_002590 L-lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D NEF87_002587 hypothetical protein K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3] D NEF87_002586 Glutamate mutase sigma subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3] D NEF87_002591 hypothetical protein K18012 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase [EC:1.4.1.11] D NEF87_002601 hypothetical protein K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D NEF87_002598 hypothetical protein K18014 kal; 3-aminobutyryl-CoA ammonia-lyase [EC:4.3.1.14] D NEF87_002604 hypothetical protein K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D NEF87_002603 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] C 00220 Arginine biosynthesis [PATH:lob00220] D NEF87_004675 Ornithine carbamoyltransferase, anabolic K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D NEF87_004563 Phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NEF87_001353 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_001499 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_000750 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D NEF87_000749 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D NEF87_004674 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D NEF87_004430 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004432 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004433 NADP-specific glutamate dehydrogenase A1 K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_001730 Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:lob00330] D NEF87_002059 Pyruvoyl-dependent arginine decarboxylase K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D NEF87_000132 N(1)-aminopropylagmatine ureohydrolase K01480 speB; agmatinase [EC:3.5.3.11] D NEF87_000173 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D NEF87_003066 hypothetical protein K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D NEF87_004831 hypothetical protein K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D NEF87_004940 N(1)-aminopropylagmatine ureohydrolase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7] D NEF87_003826 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D NEF87_004673 [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D NEF87_002492 2,5-dioxopentanoate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D NEF87_000294 2,5-dioxopentanoate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D NEF87_002435 Choline trimethylamine-lyase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172] D NEF87_000394 Choline trimethylamine-lyase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:lob00340] D NEF87_003091 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D NEF87_003090 Histidine biosynthesis bifunctional protein HisIE K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D NEF87_003088 Imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D NEF87_003089 Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D NEF87_003087 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D NEF87_003086 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D NEF87_003767 phosphatase YcdX K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D NEF87_003936 hypothetical protein K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D NEF87_003092 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D NEF87_001145 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D NEF87_001129 Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D NEF87_001146 Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D NEF87_002879 Glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] C 00350 Tyrosine metabolism [PATH:lob00350] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_003086 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D NEF87_002612 L-aspartate/L-glutamate decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00360 Phenylalanine metabolism [PATH:lob00360] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_003086 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D NEF87_003826 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:lob00380] D NEF87_003749 Kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D NEF87_003122 Kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_003684 Tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1] D NEF87_003826 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lob00400] D NEF87_002111 2-dehydro-3-deoxyphosphooctonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D NEF87_003319 2-dehydro-3-deoxyphosphooctonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D NEF87_004040 2-dehydro-3-deoxyphosphooctonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D NEF87_002107 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D NEF87_002106 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D NEF87_003654 Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D NEF87_002108 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D NEF87_002105 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D NEF87_003321 Isochorismate synthase MenF K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D NEF87_003320 Anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D NEF87_003324 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D NEF87_003322 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D NEF87_002846 Tryptophan synthase beta chain 1 K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D NEF87_002110 hypothetical protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D NEF87_002109 Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_003086 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:lob00410] D NEF87_002612 L-aspartate/L-glutamate decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D NEF87_002631 4-phosphopantoate--beta-alanine ligase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D NEF87_002594 Crotonobetainyl-CoA reductase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism C 00440 Phosphonate and phosphinate metabolism [PATH:lob00440] D NEF87_004219 2-methylisocitrate lyase K23999 fom1; phosphoenolpyruvate phosphomutase / 2-hydroxyethylphosphonate cytidylyltransferase [EC:5.4.2.9 2.7.7.104] D NEF87_004218 hypothetical protein K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00450 Selenocompound metabolism [PATH:lob00450] D NEF87_002080 LL-diaminopimelate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D NEF87_000006 Aromatic-amino-acid aminotransferase 2 K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D NEF87_004742 hypothetical protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D NEF87_004967 Ferredoxin--NADP reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D NEF87_002294 Sulfide dehydrogenase subunit alpha K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D NEF87_000740 Ferredoxin--NADP reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D NEF87_002039 Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D NEF87_002038 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D NEF87_000002 Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D NEF87_005019 hypothetical protein K10837 PSTK; O-phosphoseryl-tRNA(Sec) kinase [EC:2.7.1.164] D NEF87_001814 O-phosphoseryl-tRNA(Sec) selenium transferase K03341 SEPSECS; O-phospho-L-seryl-tRNASec:L-selenocysteinyl-tRNA synthase [EC:2.9.1.2] D NEF87_000068 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:lob00460] D NEF87_001109 Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D NEF87_000504 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D NEF87_000668 Glutamyl-tRNA(Gln) amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D NEF87_001326 hypothetical protein K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D NEF87_000283 hypothetical protein K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D NEF87_002112 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_004047 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:lob00470] D NEF87_003879 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D NEF87_000894 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D NEF87_004563 Phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D NEF87_000285 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D NEF87_001617 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D NEF87_001618 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D NEF87_002655 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D NEF87_002587 hypothetical protein K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3] D NEF87_002586 Glutamate mutase sigma subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3] C 00480 Glutathione metabolism [PATH:lob00480] D NEF87_001775 hypothetical protein K01256 pepN; aminopeptidase N [EC:3.4.11.2] D NEF87_001006 hypothetical protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D NEF87_002592 hypothetical protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D NEF87_000640 hypothetical protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D NEF87_000071 hypothetical protein K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:lob00511] D NEF87_002912 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D NEF87_003038 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D NEF87_001227 hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D NEF87_000816 hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D NEF87_001133 hypothetical protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis [PATH:lob00552] D NEF87_000941 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D NEF87_004715 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:lob00543] D NEF87_002849 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:lob00730] D NEF87_001686 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_003752 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000102 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000362 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_001481 tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D NEF87_002668 tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D NEF87_001521 hypothetical protein K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D NEF87_001444 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:lob00740] D NEF87_003258 Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D NEF87_001682 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D NEF87_004351 hypothetical protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D NEF87_004247 FAD synthase K14656 ribL; FAD synthetase [EC:2.7.7.2] D NEF87_001236 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D NEF87_002276 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D NEF87_004222 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism D NEF87_004518 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D NEF87_004708 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:lob00760] D NEF87_003737 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D NEF87_000739 Quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D NEF87_004022 hypothetical protein K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D NEF87_004547 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D NEF87_003430 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D NEF87_000925 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D NEF87_003103 Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D NEF87_001846 Putative competence-damage inducible protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D NEF87_004546 hypothetical protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D NEF87_001637 NAD-dependent protein deacylase 2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D NEF87_004740 NAD-dependent protein deacylase 2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D NEF87_000424 NAD-dependent protein deacylase 2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D NEF87_004013 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:lob00770] D NEF87_003003 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003040 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_000446 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D NEF87_003004 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D NEF87_003005 Ketol-acid reductoisomerase (NAD(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D NEF87_003006 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D NEF87_003039 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D NEF87_002651 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D NEF87_002649 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D NEF87_002633 hypothetical protein K06982 pok; pantoate kinase [EC:2.7.1.169] D NEF87_002631 4-phosphopantoate--beta-alanine ligase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D NEF87_001818 Coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D NEF87_001455 Phosphopantetheine adenylyltransferase K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D NEF87_001303 hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D NEF87_001447 hypothetical protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001448 Putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_002612 L-aspartate/L-glutamate decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00780 Biotin metabolism [PATH:lob00780] D NEF87_000934 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001311 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001312 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002424 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002425 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002595 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001471 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] C 00785 Lipoic acid metabolism [PATH:lob00785] D NEF87_004475 hypothetical protein K09711 lipS1; lipoyl synthase D NEF87_004477 hypothetical protein K24689 lipS2; lipoyl synthase D NEF87_004476 Lipoate-protein ligase A subunit 1 K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_002432 glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D NEF87_002433 glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D NEF87_002430 putative aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D NEF87_003579 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_004578 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D NEF87_002431 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:lob00790] D NEF87_004215 GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D NEF87_004582 hypothetical protein K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D NEF87_003258 Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D NEF87_000449 hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D NEF87_000451 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D NEF87_000450 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D NEF87_004228 Dihydroneopterin aldolase K09739 mptD; dihydroneopterin aldolase [EC:4.1.2.25] D NEF87_003578 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D NEF87_004229 Beta-ribofuranosylaminobenzene 5'-phosphate synthase K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D NEF87_000869 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D NEF87_003060 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D NEF87_003866 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] C 00670 One carbon pool by folate [PATH:lob00670] D NEF87_001147 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D NEF87_000994 Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D NEF87_002880 hypothetical protein K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D NEF87_002112 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_004047 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D NEF87_001437 Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D NEF87_002879 Glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D NEF87_002430 putative aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D NEF87_001658 Flavin-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D NEF87_002736 Flavin-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D NEF87_002406 hypothetical protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D NEF87_001434 hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:lob00860] D NEF87_001985 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NEF87_001099 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D NEF87_000070 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D NEF87_000489 hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D NEF87_001136 GTP 3',8-cyclase K22226 ahbC; Fe-coproporphyrin III synthase D NEF87_002018 hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D NEF87_005033 hypothetical protein K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D NEF87_004874 Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D NEF87_004873 Cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D NEF87_004872 hypothetical protein K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D NEF87_004870 Adenosylcobinamide-phosphate guanylyltransferase K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D NEF87_004871 Adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D NEF87_003418 hypothetical protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D NEF87_004869 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D NEF87_004206 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D NEF87_004875 Histidinol-phosphate aminotransferase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D NEF87_003167 hypothetical protein K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1] D NEF87_003168 hypothetical protein K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1] D NEF87_001359 hypothetical protein K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D NEF87_003877 hypothetical protein K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D NEF87_002363 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D NEF87_000063 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lob00130] D NEF87_000526 hypothetical protein K09834 VTE1; tocopherol cyclase [EC:5.5.1.24] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:lob00900] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_003601 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D NEF87_002607 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D NEF87_003599 3-hydroxy-3-methylglutaryl-coenzyme A reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D NEF87_003598 Mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D NEF87_003600 Phosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D NEF87_003597 Isopentenyl phosphate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D NEF87_003596 Isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D NEF87_004204 Isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D NEF87_003595 Short chain isoprenyl diphosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D NEF87_003780 Geranylfarnesyl diphosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D NEF87_003594 Tritrans,polycis-undecaprenyl-diphosphate synthase (GGDP specific) K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:lob00907] D NEF87_001020 L-rhamnose 1-dehydrogenase (NADP(+)) K13775 atuG; citronellol/citronellal dehydrogenase D NEF87_001314 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products D NEF87_003154 hypothetical protein K05555 actIV; cyclase [EC:4.-.-.-] C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:lob00523] D NEF87_003478 Bifunctional protein GlmU K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_004599 Bifunctional protein GlmU K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_004322 UTP--glucose-1-phosphate uridylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_001245 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_000117 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_004309 GDP-L-fucose synthase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D NEF87_004323 GDP-mannose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D NEF87_004318 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D NEF87_004329 hypothetical protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D NEF87_004528 ADP-L-glycero-D-manno-heptose-6-epimerase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D NEF87_004321 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D NEF87_004328 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D NEF87_004176 ADP-L-glycero-D-manno-heptose-6-epimerase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25] C 01054 Nonribosomal peptide structures [PATH:lob01054] D NEF87_000285 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D NEF87_004309 GDP-L-fucose synthase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D NEF87_004323 GDP-mannose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:lob00946] D NEF87_001109 Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D NEF87_000504 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D NEF87_000887 hypothetical protein K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:lob00261] D NEF87_002039 Sulfate adenylyltransferase subunit 1 K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D NEF87_002038 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D NEF87_001616 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001975 putative aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D NEF87_001621 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_004083 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D NEF87_001620 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D NEF87_001619 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:lob00521] D NEF87_004644 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_004030 Phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D NEF87_002820 hypothetical protein K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D NEF87_000715 hypothetical protein K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D NEF87_005017 Fructose-1,6-bisphosphatase/inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D NEF87_005048 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D NEF87_003478 Bifunctional protein GlmU K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_004599 Bifunctional protein GlmU K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_004322 UTP--glucose-1-phosphate uridylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_001245 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_000117 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_004309 GDP-L-fucose synthase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D NEF87_004323 GDP-mannose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D NEF87_004318 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D NEF87_004329 hypothetical protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D NEF87_004528 ADP-L-glycero-D-manno-heptose-6-epimerase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D NEF87_004321 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D NEF87_004328 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:lob00525] D NEF87_003478 Bifunctional protein GlmU K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_004599 Bifunctional protein GlmU K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_004322 UTP--glucose-1-phosphate uridylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D NEF87_001245 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_000117 Bifunctional protein GlmU K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D NEF87_004309 GDP-L-fucose synthase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D NEF87_004323 GDP-mannose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:lob00401] D NEF87_002110 hypothetical protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_003086 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:lob00405] D NEF87_003859 hypothetical protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D NEF87_003860 hypothetical protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D NEF87_003321 Isochorismate synthase MenF K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D NEF87_003320 Anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D NEF87_000934 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001311 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001312 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002424 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002425 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002595 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:lob00998] D NEF87_003611 hypothetical protein K02078 acpP; acyl carrier protein D NEF87_004219 2-methylisocitrate lyase K23999 fom1; phosphoenolpyruvate phosphomutase / 2-hydroxyethylphosphonate cytidylyltransferase [EC:5.4.2.9 2.7.7.104] D NEF87_004218 hypothetical protein K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00999 Biosynthesis of various plant secondary metabolites [PATH:lob00999] D NEF87_002542 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D NEF87_003654 Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D NEF87_001109 Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D NEF87_000504 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:lob00362] D NEF87_003021 Putative aminoacrylate hydrolase RutD K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D NEF87_004572 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D NEF87_001314 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:lob00627] D NEF87_003826 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D NEF87_002604 hypothetical protein K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D NEF87_002603 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] C 00364 Fluorobenzoate degradation [PATH:lob00364] D NEF87_000486 hypothetical protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation D NEF87_000265 Phosphoglycolate phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:lob00361] D NEF87_000486 hypothetical protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D NEF87_000265 Phosphoglycolate phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation [PATH:lob00623] D NEF87_004856 hypothetical protein K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1] D NEF87_000486 hypothetical protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation C 00633 Nitrotoluene degradation D NEF87_002421 Ketoisovalerate oxidoreductase subunit VorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002874 Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D NEF87_002288 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002422 Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002873 hypothetical protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D NEF87_002875 hypothetical protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D NEF87_002291 Pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002419 Pyruvate synthase subunit PorC K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D NEF87_002290 hypothetical protein K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D NEF87_002420 Ion-translocating oxidoreductase complex subunit B K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation D NEF87_001314 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:lob00643] D NEF87_003826 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D NEF87_000837 hypothetical protein K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D NEF87_000838 hypothetical protein K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation D NEF87_000807 GDP-L-fucose synthase K16045 hsd; 3beta-hydroxy-Delta5-steroid dehydrogenase / steroid Delta-isomerase [EC:1.1.1.145 5.3.3.1] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:lob03020] D NEF87_002137 DNA-directed RNA polymerase subunit beta K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D NEF87_001573 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D NEF87_001572 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D NEF87_004046 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D NEF87_001309 DNA-directed RNA polymerase subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D NEF87_002138 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D NEF87_003941 hypothetical protein K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D NEF87_001281 hypothetical protein K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D NEF87_002643 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:lob03022] D NEF87_000967 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D NEF87_001342 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_001413 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_001884 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002281 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002283 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002465 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002644 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002705 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002815 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_003975 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_004103 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_000954 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_001391 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004667 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004168 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004172 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_002069 Transcription factor E K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D NEF87_003020 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_004523 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:lob03010] D NEF87_004232 hypothetical protein K02967 RP-S2; small subunit ribosomal protein S2 D NEF87_003562 hypothetical protein K02982 RP-S3; small subunit ribosomal protein S3 D NEF87_004553 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D NEF87_003548 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D NEF87_001569 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D NEF87_003553 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D NEF87_004045 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D NEF87_000153 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D NEF87_004552 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D NEF87_001570 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D NEF87_004554 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D NEF87_003554 hypothetical protein K02954 RP-S14; small subunit ribosomal protein S14 D NEF87_000124 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D NEF87_003559 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D NEF87_003566 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D NEF87_000123 hypothetical protein K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D NEF87_003556 30S ribosomal protein S4e K02987 RP-S4e; small subunit ribosomal protein S4e D NEF87_001277 30S ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D NEF87_004237 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D NEF87_002708 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D NEF87_001162 30S ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D NEF87_001302 hypothetical protein K02974 RP-S24e; small subunit ribosomal protein S24e D NEF87_001565 30S ribosomal protein S27e K02978 RP-S27e; small subunit ribosomal protein S27e D NEF87_001301 hypothetical protein K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D NEF87_001279 hypothetical protein K02979 RP-S28e; small subunit ribosomal protein S28e D NEF87_004208 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D NEF87_002525 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D NEF87_002719 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D NEF87_003555 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D NEF87_003552 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D NEF87_004209 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D NEF87_004207 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D NEF87_004210 hypothetical protein K02869 RP-L12; large subunit ribosomal protein L12 D NEF87_004044 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D NEF87_003558 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D NEF87_003546 hypothetical protein K02876 RP-L15; large subunit ribosomal protein L15 D NEF87_003549 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D NEF87_003563 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D NEF87_002717 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D NEF87_003557 hypothetical protein K02895 RP-L24; large subunit ribosomal protein L24 D NEF87_003561 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D NEF87_003547 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D NEF87_002718 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D NEF87_001280 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D NEF87_000099 hypothetical protein K02866 RP-L10e; large subunit ribosomal protein L10e D NEF87_001853 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e D NEF87_002827 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D NEF87_004043 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D NEF87_003550 50S ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D NEF87_002941 50S ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D NEF87_001278 50S ribosomal protein L24e K02896 RP-L24e; large subunit ribosomal protein L24e D NEF87_001571 50S ribosomal protein L30e K02908 RP-L30e; large subunit ribosomal protein L30e D NEF87_001164 hypothetical protein K02910 RP-L31e; large subunit ribosomal protein L31e D NEF87_003551 hypothetical protein K02912 RP-L32e; large subunit ribosomal protein L32e D NEF87_001850 hypothetical protein K02915 RP-L34e; large subunit ribosomal protein L34e D NEF87_004526 50S ribosomal protein L35Ae K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D NEF87_004124 hypothetical protein K02922 RP-L37e; large subunit ribosomal protein L37e D NEF87_002548 50S ribosomal protein L37Ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D NEF87_004025 hypothetical protein K02923 RP-L38e; large subunit ribosomal protein L38e D NEF87_001566 50S ribosomal protein L44e K02929 RP-L44e; large subunit ribosomal protein L44e D NEF87_001166 50S ribosomal protein L18Ae K02944 RP-LX; large subunit ribosomal protein LX C 00970 Aminoacyl-tRNA biosynthesis [PATH:lob00970] D NEF87_001985 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NEF87_002209 Glutamyl-tRNA(Gln) amidotransferase subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D NEF87_002237 Glutamyl-tRNA(Gln) amidotransferase subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D NEF87_002210 Glutamyl-tRNA(Gln) amidotransferase subunit E K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D NEF87_002236 Glutamyl-tRNA(Gln) amidotransferase subunit E K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D NEF87_002176 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NEF87_003960 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NEF87_004549 Aspartate--tRNA(Asp/Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D NEF87_001591 Aspartate--tRNA(Asp/Asn) ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D NEF87_004514 Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D NEF87_004429 hypothetical protein K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D NEF87_001418 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D NEF87_002830 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D NEF87_005019 hypothetical protein K10837 PSTK; O-phosphoseryl-tRNA(Sec) kinase [EC:2.7.1.164] D NEF87_001814 O-phosphoseryl-tRNA(Sec) selenium transferase K03341 SEPSECS; O-phospho-L-seryl-tRNASec:L-selenocysteinyl-tRNA synthase [EC:2.9.1.2] D NEF87_003225 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NEF87_003500 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NEF87_003759 hypothetical protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D NEF87_000068 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D NEF87_001829 Isoleucine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NEF87_000107 Isoleucine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NEF87_001120 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_001823 Isoleucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_004628 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D NEF87_002721 Lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D NEF87_003719 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NEF87_003713 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D NEF87_001295 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D NEF87_002480 Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D NEF87_002479 Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D NEF87_001509 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_004937 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_003012 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:lob03060] D NEF87_003013 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D NEF87_003504 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_004017 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_001168 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D NEF87_001169 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D NEF87_004236 hypothetical protein K03105 SRP19; signal recognition particle subunit SRP19 D NEF87_001171 Putative arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D NEF87_000105 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC D NEF87_004736 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D NEF87_004737 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:lob04122] D NEF87_001686 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_003752 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000102 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000362 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_002011 Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D NEF87_002196 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D NEF87_000360 Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D NEF87_002008 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D NEF87_002229 hypothetical protein K03636 moaD; sulfur-carrier protein D NEF87_003521 hypothetical protein K03636 moaD; sulfur-carrier protein D NEF87_002913 hypothetical protein K03636 moaD; sulfur-carrier protein D NEF87_000842 SAMP-activating enzyme E1 K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D NEF87_002995 hypothetical protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D NEF87_003305 hypothetical protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D NEF87_001481 tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D NEF87_002668 tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D NEF87_000076 hypothetical protein K03154 thiS; sulfur carrier protein D NEF87_001502 hypothetical protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome [PATH:lob03050] D NEF87_001647 Proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit D NEF87_002292 Proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit D NEF87_002627 Proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit D NEF87_001831 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_003031 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_002554 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_001989 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_002449 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_003696 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:lob03018] D NEF87_001958 Exosome complex component Csl4 K07573 CSL4; exosome complex component CSL4 D NEF87_002551 Exosome complex component Rrp4 K03679 RRP4; exosome complex component RRP4 D NEF87_002549 Exosome complex component Rrp42 K12589 RRP42; exosome complex component RRP42 D NEF87_002550 Ribonuclease PH K11600 RRP41; exosome complex component RRP41 D NEF87_001960 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NEF87_003642 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D NEF87_003370 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D NEF87_002602 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D NEF87_000667 Ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D NEF87_001379 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK B B 09124 Replication and repair C 03030 DNA replication [PATH:lob03030] D NEF87_001170 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D NEF87_004187 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D NEF87_002253 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D NEF87_001582 DNA polymerase 1 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D NEF87_002740 hypothetical protein K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D NEF87_002498 hypothetical protein K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D NEF87_002499 DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D NEF87_001554 hypothetical protein K02683 priS; DNA primase small subunit [EC:2.7.7.102] D NEF87_001555 hypothetical protein K18882 priL; DNA primase large subunit D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D NEF87_001979 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D NEF87_003981 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D NEF87_003982 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D NEF87_003980 Replication factor C large subunit K04800 rfcL; replication factor C large subunit D NEF87_005055 ATP-dependent RecD-like DNA helicase K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-] D NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:lob03410] D NEF87_000372 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D NEF87_003761 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D NEF87_002953 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D NEF87_001604 Endonuclease III K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D NEF87_001159 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D NEF87_002344 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D NEF87_002442 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D NEF87_004640 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D NEF87_001430 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:lob03420] D NEF87_001183 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D NEF87_001184 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D NEF87_002977 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D NEF87_004851 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NEF87_002614 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NEF87_003020 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_004523 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D NEF87_001001 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D NEF87_004777 3'-flap repair endonuclease Xpf K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:lob03430] D NEF87_002315 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D NEF87_004671 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D NEF87_002588 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D NEF87_002362 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D NEF87_004851 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NEF87_002614 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_002341 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination [PATH:lob03440] D NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 C 03450 Non-homologous end-joining D NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D NEF87_003632 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:lob02010] D NEF87_003909 hypothetical protein K15553 ssuA; sulfonate transport system substrate-binding protein D NEF87_003912 Vitamin B12 import ATP-binding protein BtuD K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D NEF87_002757 Vitamin B12 import ATP-binding protein BtuD K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D NEF87_001519 hypothetical protein K02064 thiB; thiamine transport system substrate-binding protein D NEF87_001518 hypothetical protein K02063 thiP; thiamine transport system permease protein D NEF87_002755 hypothetical protein K02063 thiP; thiamine transport system permease protein D NEF87_001517 Vitamin B12 import ATP-binding protein BtuD K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D NEF87_002756 Trehalose/maltose import ATP-binding protein MalK K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D NEF87_000548 Trehalose/maltose import ATP-binding protein MalK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D NEF87_003568 Trehalose/maltose-binding protein MalE K10236 thuE; trehalose/maltose transport system substrate-binding protein D NEF87_000550 Trehalose/maltose-binding protein MalE K10236 thuE; trehalose/maltose transport system substrate-binding protein D NEF87_004063 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D NEF87_004065 Trehalose/maltose import ATP-binding protein MalK K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D NEF87_002475 hypothetical protein K10037 glnP; glutamine transport system permease protein D NEF87_000726 Vitamin B12 import ATP-binding protein BtuD K15583 oppD; oligopeptide transport system ATP-binding protein D NEF87_002287 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000125 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000628 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000722 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_002208 hypothetical protein K12369 dppB; dipeptide transport system permease protein D NEF87_000724 hypothetical protein K12369 dppB; dipeptide transport system permease protein D NEF87_001626 hypothetical protein K12370 dppC; dipeptide transport system permease protein D NEF87_004077 hypothetical protein K19976 mntB; manganese transport system permease protein D NEF87_004075 hypothetical protein K09815 znuA; zinc transport system substrate-binding protein D NEF87_004078 putative ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D NEF87_000951 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D NEF87_000952 Cobalt transport protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D NEF87_000950 hypothetical protein K02008 cbiQ; cobalt/nickel transport system permease protein D NEF87_000949 Glucose import ATP-binding protein GlcV K02006 cbiO; cobalt/nickel transport system ATP-binding protein D NEF87_002264 Energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D NEF87_004276 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein D NEF87_004275 Vitamin B12 import ATP-binding protein BtuD K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D NEF87_000764 hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein D NEF87_000765 putative ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D NEF87_002517 Vitamin B12 import ATP-binding protein BtuD K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D NEF87_001787 Vitamin B12 import ATP-binding protein BtuD K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D NEF87_001788 Vitamin B12 import ATP-binding protein BtuD K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) D NEF87_001217 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:lob03070] D NEF87_003013 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D NEF87_001168 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D NEF87_003504 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_004017 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_000105 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC D NEF87_000442 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp B B 09132 Signal transduction C 02020 Two-component system [PATH:lob02020] D NEF87_004063 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D NEF87_003634 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D NEF87_004180 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D NEF87_001353 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_001499 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_002604 hypothetical protein K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D NEF87_002603 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_004496 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_002446 Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_004366 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_001961 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_001962 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_001963 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003407 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002346 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002468 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003889 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003885 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_003888 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_000406 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_000981 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003886 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000407 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000982 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_003887 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000398 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000980 Protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D NEF87_005064 hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D NEF87_004231 hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D NEF87_004311 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D NEF87_004315 UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D NEF87_000616 hypothetical protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:lob02024] D NEF87_003321 Isochorismate synthase MenF K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D NEF87_003320 Anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D NEF87_003859 hypothetical protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D NEF87_003860 hypothetical protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D NEF87_001758 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_003461 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004471 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004472 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000326 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000588 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000726 Vitamin B12 import ATP-binding protein BtuD K15583 oppD; oligopeptide transport system ATP-binding protein D NEF87_002207 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_002286 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_003045 HTH-type transcriptional regulator SgrR K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_003070 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_002327 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_000101 HTH-type transcriptional regulator SgrR K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_000626 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_000627 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_001627 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D NEF87_003071 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D NEF87_002326 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D NEF87_003072 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D NEF87_002325 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D NEF87_000725 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D NEF87_003073 Vitamin B12 import ATP-binding protein BtuD K02031 ddpD; peptide/nickel transport system ATP-binding protein D NEF87_002324 Vitamin B12 import ATP-binding protein BtuD K02031 ddpD; peptide/nickel transport system ATP-binding protein D NEF87_003074 Trehalose/maltose import ATP-binding protein MalK K02032 ddpF; peptide/nickel transport system ATP-binding protein D NEF87_002323 Trehalose/maltose import ATP-binding protein MalK K02032 ddpF; peptide/nickel transport system ATP-binding protein D NEF87_000727 Glucose import ATP-binding protein GlcV K02032 ddpF; peptide/nickel transport system ATP-binding protein D NEF87_003013 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D NEF87_001168 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D NEF87_003504 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_004017 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:lob02030] D NEF87_001961 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_001962 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_001963 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003407 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002346 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002468 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003889 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002287 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000125 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000628 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000722 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000981 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003886 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000407 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003885 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_003888 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_000406 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_000982 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_003887 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000398 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000970 hypothetical protein K03410 cheC; chemotaxis protein CheC D NEF87_000399 hypothetical protein K03410 cheC; chemotaxis protein CheC D NEF87_000980 Protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D NEF87_000978 Chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D NEF87_004496 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_002446 Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_004366 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] C 02040 Flagellar assembly C 04814 Motor proteins D NEF87_005051 hypothetical protein K10419 DYNLRB; dynein light chain roadblock-type C 04820 Cytoskeleton in muscle cells D NEF87_001960 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:lob04980] D NEF87_002018 hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D NEF87_005036 Fused isobutyryl-CoA mutase K07588 MMAA; GTPase [EC:3.6.5.-] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance D NEF87_000726 Vitamin B12 import ATP-binding protein BtuD K15583 oppD; oligopeptide transport system ATP-binding protein C 01502 Vancomycin resistance [PATH:lob01502] D NEF87_003879 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:lob01000] C 01001 Protein kinases [BR:lob01001] D NEF87_001300 putative bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1] D NEF87_003291 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D NEF87_002658 RIO-type serine/threonine-protein kinase Rio1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D NEF87_002065 RIO-type serine/threonine-protein kinase Rio2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D NEF87_000981 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003886 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000407 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:lob01009] D NEF87_002661 Translation initiation factor 2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2 D NEF87_003700 S-inosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D NEF87_004719 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D NEF87_002803 hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:lob01002] D NEF87_000830 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D NEF87_001630 hypothetical protein K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51] D NEF87_002244 Carbamoyl-phosphate synthase small chain K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NEF87_003944 NH(3)-dependent NAD(+) synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NEF87_004005 Carbamoyl-phosphate synthase small chain K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D NEF87_001091 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NEF87_004562 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D NEF87_001824 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_002319 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_002857 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D NEF87_000258 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D NEF87_003107 Deglycase PfpI K03152 thiJ; protein deglycase [EC:3.5.1.124] D NEF87_001002 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_001776 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_002024 CAAX prenyl protease 2 K07052 K07052; CAAX protease family protein D NEF87_002577 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_000141 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_000248 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_000273 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_000797 hypothetical protein K07052 K07052; CAAX protease family protein D NEF87_001775 hypothetical protein K01256 pepN; aminopeptidase N [EC:3.4.11.2] D NEF87_003171 Leucyl aminopeptidase K13722 trf2_3; tricorn protease interacting factor F2/3 [EC:3.4.11.-] D NEF87_002582 Leucyl aminopeptidase K13722 trf2_3; tricorn protease interacting factor F2/3 [EC:3.4.11.-] D NEF87_002968 hypothetical protein K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D NEF87_000274 hypothetical protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D NEF87_002243 putative metallohydrolase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D NEF87_000670 Peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D NEF87_001006 hypothetical protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D NEF87_002592 hypothetical protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D NEF87_000640 hypothetical protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D NEF87_001520 N-acetyldiaminopimelate deacetylase K12941 abgB; aminobenzoyl-glutamate utilization protein B D NEF87_004454 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D NEF87_004198 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D NEF87_000889 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_000892 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_000897 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_000898 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_002142 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_003113 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_003882 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D NEF87_003064 Thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D NEF87_003730 hypothetical protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D NEF87_004736 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D NEF87_004737 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D NEF87_001346 hypothetical protein K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D NEF87_000887 hypothetical protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D NEF87_003292 Peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21] D NEF87_002178 hypothetical protein K07059 K07059; rhomboid family protein D NEF87_001831 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_003031 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_002554 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_001989 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_002449 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_003696 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_001326 hypothetical protein K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D NEF87_000283 hypothetical protein K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D NEF87_001543 hypothetical protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D NEF87_001713 hypothetical protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D NEF87_000111 hypothetical protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D NEF87_003203 hypothetical protein K03592 pmbA; PmbA protein D NEF87_004483 hypothetical protein K03592 pmbA; PmbA protein D NEF87_003992 hypothetical protein K03592 pmbA; PmbA protein D NEF87_003204 hypothetical protein K03568 tldD; TldD protein D NEF87_004482 hypothetical protein K03568 tldD; TldD protein D NEF87_003993 Zinc metalloprotease TldD K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:lob01003] D NEF87_003615 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] D NEF87_004524 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] C 01005 Lipopolysaccharide biosynthesis proteins [BR:lob01005] D NEF87_001669 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lob01011] D NEF87_003879 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D NEF87_000941 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D NEF87_004715 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] C 01004 Lipid biosynthesis proteins [BR:lob01004] D NEF87_000934 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001311 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_001312 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002424 hypothetical protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002425 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_002595 L-rhamnose 1-dehydrogenase (NADP(+)) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D NEF87_005086 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D NEF87_001711 3-hydroxypropionyl-coenzyme A synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D NEF87_001755 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005013 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_005014 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_004163 Acetate--CoA ligase [ADP-forming] II subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000084 Acetate--CoA ligase [ADP-forming] K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_000598 Acetate--CoA ligase [ADP-forming] I subunit alpha K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D NEF87_001575 Acetate--CoA ligase [ADP-forming] I subunit beta K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D NEF87_001703 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_000610 Acetate--CoA ligase [ADP-forming] I K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D NEF87_001758 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_003461 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004471 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004472 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000326 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000588 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_001966 4-hydroxybutyrate--CoA ligase 2 K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D NEF87_000904 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_002904 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_002905 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D NEF87_000612 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:lob01008] D NEF87_003154 hypothetical protein K05555 actIV; cyclase [EC:4.-.-.-] D NEF87_000285 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:lob01006] D NEF87_003595 Short chain isoprenyl diphosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D NEF87_003780 Geranylfarnesyl diphosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] C 01007 Amino acid related enzymes [BR:lob01007] D NEF87_002721 Lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D NEF87_001985 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NEF87_001509 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_004937 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_003012 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D NEF87_003225 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NEF87_003500 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NEF87_003719 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NEF87_000068 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D NEF87_004628 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D NEF87_001829 Isoleucine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NEF87_000107 Isoleucine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NEF87_001120 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_001823 Isoleucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_001591 Aspartate--tRNA(Asp/Asn) ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D NEF87_004514 Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D NEF87_004549 Aspartate--tRNA(Asp/Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D NEF87_001295 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D NEF87_004429 hypothetical protein K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D NEF87_002830 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D NEF87_003713 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D NEF87_001418 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D NEF87_002176 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NEF87_003960 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NEF87_002480 Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D NEF87_002479 Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D NEF87_003759 hypothetical protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D NEF87_000606 LL-diaminopimelate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D NEF87_001615 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D NEF87_002444 Aromatic-amino-acid aminotransferase 2 K10907 K10907; aminotransferase [EC:2.6.1.-] D NEF87_003086 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D NEF87_000165 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D NEF87_001471 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D NEF87_002080 LL-diaminopimelate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D NEF87_000006 Aromatic-amino-acid aminotransferase 2 K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D NEF87_004673 [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D NEF87_001099 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D NEF87_000070 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D NEF87_001447 hypothetical protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D NEF87_001448 Putative branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:lob03000] D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D NEF87_000954 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_001391 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004667 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004168 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004172 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_001904 hypothetical protein K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D NEF87_000488 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator D NEF87_000389 hypothetical protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D NEF87_001590 putative HTH-type transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D NEF87_003106 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D NEF87_004575 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D NEF87_000341 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D NEF87_001623 hypothetical protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D NEF87_001734 hypothetical protein K10947 K10947; PadR family transcriptional regulator D NEF87_003255 hypothetical protein K10947 K10947; PadR family transcriptional regulator D NEF87_000760 hypothetical protein K10947 K10947; PadR family transcriptional regulator D NEF87_005060 HTH-type transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NEF87_004074 hypothetical protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NEF87_003644 HTH-type sugar sensing transcriptional regulator TrmBL1 K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NEF87_003778 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NEF87_004001 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NEF87_000997 hypothetical protein K02019 modE; molybdate transport system regulatory protein D NEF87_002254 hypothetical protein K07728 K07728; putative transcriptional regulator D NEF87_000567 hypothetical protein K07729 K07729; putative transcriptional regulator D NEF87_003520 Putative nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D NEF87_004023 Nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C 03021 Transcription machinery [BR:lob03021] D NEF87_000967 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D NEF87_001342 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_001413 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_001884 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002281 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002283 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002465 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002644 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002705 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D NEF87_002815 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_003975 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_004103 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D NEF87_000954 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_001391 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004667 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004168 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_004172 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D NEF87_002069 Transcription factor E K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D NEF87_003020 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_004523 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_003632 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5 D NEF87_001887 GPN-loop GTPase K24104 GPN; GPN-loop GTPase D NEF87_001573 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D NEF87_001572 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D NEF87_002137 DNA-directed RNA polymerase subunit beta K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D NEF87_004046 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D NEF87_001309 DNA-directed RNA polymerase subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D NEF87_002138 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D NEF87_003941 hypothetical protein K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D NEF87_001281 hypothetical protein K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D NEF87_002643 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D NEF87_001564 Transcription factor S K03057 tfs; transcription factor S D NEF87_004173 hypothetical protein K03057 tfs; transcription factor S D NEF87_000343 hypothetical protein K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:lob03019] D NEF87_003632 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5 D NEF87_005018 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004010 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004092 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_002271 Protein pelota K06965 PELO; protein pelota D NEF87_002632 Peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1 D NEF87_001928 Elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D NEF87_001958 Exosome complex component Csl4 K07573 CSL4; exosome complex component CSL4 D NEF87_002551 Exosome complex component Rrp4 K03679 RRP4; exosome complex component RRP4 D NEF87_002550 Ribonuclease PH K11600 RRP41; exosome complex component RRP41 D NEF87_002549 Exosome complex component Rrp42 K12589 RRP42; exosome complex component RRP42 D NEF87_000667 Ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D NEF87_003642 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D NEF87_003370 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D NEF87_002602 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D NEF87_001960 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NEF87_001379 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NEF87_000988 DEAD-box ATP-dependent RNA helicase CshB K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-] C 03041 Spliceosome [BR:lob03041] D NEF87_002418 hypothetical protein K06874 ZPR1; zinc finger protein ZPR1 C 03011 Ribosome [BR:lob03011] D NEF87_000123 hypothetical protein K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D NEF87_003556 30S ribosomal protein S4e K02987 RP-S4e; small subunit ribosomal protein S4e D NEF87_001277 30S ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D NEF87_004237 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D NEF87_002708 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D NEF87_001162 30S ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D NEF87_001302 hypothetical protein K02974 RP-S24e; small subunit ribosomal protein S24e D NEF87_001565 30S ribosomal protein S27e K02978 RP-S27e; small subunit ribosomal protein S27e D NEF87_001301 hypothetical protein K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D NEF87_001279 hypothetical protein K02979 RP-S28e; small subunit ribosomal protein S28e D NEF87_002718 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D NEF87_001280 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D NEF87_000099 hypothetical protein K02866 RP-L10e; large subunit ribosomal protein L10e D NEF87_001853 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e D NEF87_002827 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D NEF87_004043 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D NEF87_003550 50S ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D NEF87_002941 50S ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D NEF87_001278 50S ribosomal protein L24e K02896 RP-L24e; large subunit ribosomal protein L24e D NEF87_001571 50S ribosomal protein L30e K02908 RP-L30e; large subunit ribosomal protein L30e D NEF87_001164 hypothetical protein K02910 RP-L31e; large subunit ribosomal protein L31e D NEF87_003551 hypothetical protein K02912 RP-L32e; large subunit ribosomal protein L32e D NEF87_001850 hypothetical protein K02915 RP-L34e; large subunit ribosomal protein L34e D NEF87_004526 50S ribosomal protein L35Ae K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D NEF87_004124 hypothetical protein K02922 RP-L37e; large subunit ribosomal protein L37e D NEF87_002548 50S ribosomal protein L37Ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D NEF87_004025 hypothetical protein K02923 RP-L38e; large subunit ribosomal protein L38e D NEF87_001566 50S ribosomal protein L44e K02929 RP-L44e; large subunit ribosomal protein L44e D NEF87_004232 hypothetical protein K02967 RP-S2; small subunit ribosomal protein S2 D NEF87_003562 hypothetical protein K02982 RP-S3; small subunit ribosomal protein S3 D NEF87_004553 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D NEF87_003548 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D NEF87_001569 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D NEF87_003553 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D NEF87_004045 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D NEF87_000153 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D NEF87_004552 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D NEF87_001570 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D NEF87_004554 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D NEF87_003554 hypothetical protein K02954 RP-S14; small subunit ribosomal protein S14 D NEF87_000124 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D NEF87_003559 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D NEF87_003566 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D NEF87_004208 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D NEF87_002525 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D NEF87_002719 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D NEF87_003555 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D NEF87_003552 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D NEF87_004209 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D NEF87_004207 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D NEF87_004044 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D NEF87_003558 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D NEF87_003546 hypothetical protein K02876 RP-L15; large subunit ribosomal protein L15 D NEF87_003549 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D NEF87_003563 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D NEF87_002717 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D NEF87_003557 hypothetical protein K02895 RP-L24; large subunit ribosomal protein L24 D NEF87_003561 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D NEF87_003547 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D NEF87_004210 hypothetical protein K02869 RP-L12; large subunit ribosomal protein L12 D NEF87_001166 50S ribosomal protein L18Ae K02944 RP-LX; large subunit ribosomal protein LX C 03009 Ribosome biogenesis [BR:lob03009] D NEF87_002250 hypothetical protein K14564 NOP56; nucleolar protein 56 D NEF87_001552 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D NEF87_001156 Ribosomal RNA small subunit methyltransferase Nep1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D NEF87_002657 hypothetical protein K06961 KRR1; ribosomal RNA assembly protein D NEF87_003291 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D NEF87_002658 RIO-type serine/threonine-protein kinase Rio1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D NEF87_002065 RIO-type serine/threonine-protein kinase Rio2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D NEF87_002796 Putative adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D NEF87_002696 putative ribosome biogenesis protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D NEF87_001484 Vitamin B12 import ATP-binding protein BtuD K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D NEF87_002720 Vitamin B12 import ATP-binding protein BtuD K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D NEF87_002051 GTPase Obg K06943 NOG1; nucleolar GTP-binding protein D NEF87_002824 Ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D NEF87_001165 Translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D NEF87_002659 hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3 D NEF87_002552 Ribosome maturation protein SDO1 K14574 SDO1; ribosome maturation protein SDO1 D NEF87_005018 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004010 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004092 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_002251 Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K04795 flpA; fibrillarin-like pre-rRNA processing protein D NEF87_001280 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D NEF87_001414 hypothetical protein K07569 gar1; RNA-binding protein D NEF87_003237 putative ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D NEF87_002938 putative ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D NEF87_001998 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D NEF87_004699 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D NEF87_002139 putative S-adenosylmethionine-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D NEF87_003585 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D NEF87_004968 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D NEF87_003785 Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D NEF87_001948 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D NEF87_002280 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D NEF87_002352 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D NEF87_002416 Mycothiol acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D NEF87_002630 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D NEF87_003370 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D NEF87_002602 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D NEF87_002608 GTPase HflX K03665 hflX; GTPase D NEF87_002834 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D NEF87_002699 Obg-like ATPase 1 K06942 ychF; ribosome-binding ATPase D NEF87_004668 putative ribonuclease FAU-1 K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-] C 03016 Transfer RNA biogenesis [BR:lob03016] D NEF87_002824 Ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D NEF87_001157 hypothetical protein K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D NEF87_001216 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D NEF87_001348 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D NEF87_000802 Ribonuclease BN K00784 rnz; ribonuclease Z [EC:3.1.26.11] D NEF87_002466 tRNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D NEF87_002544 Protein archease K24956 ZBTB8OS; protein archease D NEF87_001928 Elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D NEF87_001985 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NEF87_003713 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D NEF87_004628 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D NEF87_001120 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_001823 Isoleucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_000068 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D NEF87_003719 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NEF87_002176 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NEF87_003960 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D NEF87_001591 Aspartate--tRNA(Asp/Asn) ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D NEF87_004514 Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D NEF87_004429 hypothetical protein K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D NEF87_001418 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D NEF87_002830 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D NEF87_003225 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NEF87_003500 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D NEF87_001829 Isoleucine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NEF87_000107 Isoleucine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D NEF87_001295 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D NEF87_002480 Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D NEF87_002479 Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D NEF87_001509 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_004937 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_003012 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D NEF87_004399 D-aminoacyl-tRNA deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D NEF87_001369 Alanyl-tRNA editing protein AlaX-M K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D NEF87_002738 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D NEF87_002706 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D NEF87_003586 tRNA (guanine(26)-N(2))-dimethyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D NEF87_002808 tRNA (guanine(37)-N1)-methyltransferase Trm5b K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D NEF87_004049 hypothetical protein K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D NEF87_004646 hypothetical protein K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229] D NEF87_001421 hypothetical protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D NEF87_003755 tRNA (guanine(37)-N1)-methyltransferase Trm5b K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114] D NEF87_001980 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D NEF87_002140 putative tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D NEF87_004550 putative tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D NEF87_002969 tRNA pseudouridine synthase Pus10 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D NEF87_001686 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_003752 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000102 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000362 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_002245 tRNA uridine(34) acetyltransferase K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D NEF87_002834 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D NEF87_000002 Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D NEF87_002427 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1 D NEF87_001456 Exosome complex component Rrp41 K00989 rph; ribonuclease PH [EC:2.7.7.56] D NEF87_001180 hypothetical protein K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D NEF87_004145 tRNA-splicing endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D NEF87_000659 hypothetical protein K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D NEF87_004950 RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D NEF87_002721 Lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D NEF87_003759 hypothetical protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D NEF87_004549 Aspartate--tRNA(Asp/Asn) ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D NEF87_000939 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D NEF87_000828 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D NEF87_001446 tRNA-dihydrouridine(16) synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D NEF87_001503 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D NEF87_002246 Carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D NEF87_003663 Ribosomal RNA small subunit methyltransferase F K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-] D NEF87_001826 tRNA-5-methyluridine(54) 2-sulfurtransferase K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D NEF87_002962 tRNA-5-methyluridine(54) 2-sulfurtransferase K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D NEF87_002011 Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D NEF87_002196 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D NEF87_000360 Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D NEF87_002008 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D NEF87_001300 putative bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1] D NEF87_002547 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1 D NEF87_000450 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D NEF87_000449 hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D NEF87_000451 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D NEF87_002806 tRNA-guanine(15) transglycosylase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D NEF87_001481 tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D NEF87_002668 tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03012 Translation factors [BR:lob03012] D NEF87_003624 Translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A D NEF87_004695 Protein translation factor SUI1 K03113 EIF1; translation initiation factor 1 D NEF87_001551 Translation initiation factor 2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1 D NEF87_002661 Translation initiation factor 2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2 D NEF87_003956 Translation initiation factor 2 subunit gamma K03242 EIF2S3; translation initiation factor 2 subunit 3 D NEF87_004014 Translation initiation factor 5A K03263 EIF5A; translation initiation factor 5A D NEF87_001276 putative translation initiation factor IF-2 K03243 EIF5B; translation initiation factor 5B D NEF87_001165 Translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D NEF87_001928 Elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D NEF87_002357 hypothetical protein K03232 EEF1B; elongation factor 1-beta D NEF87_001175 Elongation factor 2 K03234 EEF2; elongation factor 2 D NEF87_004973 Elongation factor 2 K03234 EEF2; elongation factor 2 D NEF87_002745 Elongation factor Tu K03833 selB; selenocysteine-specific elongation factor D NEF87_002632 Peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1 D NEF87_002937 Release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D NEF87_004024 Peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:lob03110] D NEF87_003011 ATP-dependent Clp protease ATP-binding subunit ClpX K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D NEF87_004719 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D NEF87_001379 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NEF87_003649 Thermosome subunit alpha K22447 cct; archaeal chaperonin D NEF87_002697 Thermosome subunit alpha K22447 cct; archaeal chaperonin D NEF87_004053 Thermosome subunit alpha K22447 cct; archaeal chaperonin D NEF87_001380 Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D NEF87_004109 Protein GrpE K03687 GRPE; molecular chaperone GrpE D NEF87_001540 hypothetical protein K13993 HSP20; HSP20 family protein D NEF87_004731 hypothetical protein K13993 HSP20; HSP20 family protein D NEF87_004090 hypothetical protein K13993 HSP20; HSP20 family protein D NEF87_004091 hypothetical protein K13993 HSP20; HSP20 family protein D NEF87_001167 Prefoldin subunit alpha K04797 pfdA; prefoldin alpha subunit D NEF87_002259 hypothetical protein K04798 pfdB; prefoldin beta subunit D NEF87_003038 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D NEF87_002066 hypothetical protein K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D NEF87_002954 hypothetical protein K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D NEF87_003691 hypothetical protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D NEF87_001335 Thiol:disulfide interchange protein DsbD K03671 TXN; thioredoxin D NEF87_004500 Thiol-disulfide oxidoreductase ResA K03671 TXN; thioredoxin D NEF87_005025 hypothetical protein K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:lob04131] D NEF87_002274 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D NEF87_005018 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004010 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004092 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_001464 hypothetical protein K12188 SNF8; ESCRT-II complex subunit VPS22 D NEF87_005051 hypothetical protein K10419 DYNLRB; dynein light chain roadblock-type D NEF87_001171 Putative arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D NEF87_001169 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D NEF87_001227 hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D NEF87_000816 hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D NEF87_004364 D-erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NEF87_004534 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D NEF87_004719 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D NEF87_001928 Elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D NEF87_003497 hypothetical protein K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system [BR:lob04121] D NEF87_001301 hypothetical protein K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae C 03051 Proteasome [BR:lob03051] D NEF87_004719 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D NEF87_001831 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_003031 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_002554 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D NEF87_001989 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_002449 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_003696 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D NEF87_001647 Proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit D NEF87_002292 Proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit D NEF87_002627 Proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:lob03032] D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D NEF87_004187 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D NEF87_005055 ATP-dependent RecD-like DNA helicase K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-] D NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D NEF87_001552 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D NEF87_001001 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D NEF87_004777 3'-flap repair endonuclease Xpf K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D NEF87_001170 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D NEF87_002496 ORC1-type DNA replication protein K10725 cdc6A; archaeal cell division control protein 6 D NEF87_002711 ORC1-type DNA replication protein 2 K10725 cdc6A; archaeal cell division control protein 6 D NEF87_000603 ORC1-type DNA replication protein K10725 cdc6A; archaeal cell division control protein 6 D NEF87_001554 hypothetical protein K02683 priS; DNA primase small subunit [EC:2.7.7.102] D NEF87_001555 hypothetical protein K18882 priL; DNA primase large subunit D NEF87_002253 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D NEF87_001582 DNA polymerase 1 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D NEF87_002740 hypothetical protein K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D NEF87_002499 DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D NEF87_002498 hypothetical protein K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D NEF87_003980 Replication factor C large subunit K04800 rfcL; replication factor C large subunit D NEF87_001979 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D NEF87_003981 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D NEF87_003982 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D NEF87_002341 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D NEF87_004585 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D NEF87_004584 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D NEF87_001820 DNA topoisomerase 6 subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D NEF87_005056 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:lob03036] D NEF87_000915 Archaeal histone A K24450 hmf; DNA-binding protein D NEF87_001932 hypothetical protein K24450 hmf; DNA-binding protein D NEF87_003109 Archaeal histone A K24450 hmf; DNA-binding protein D NEF87_003444 DNA-binding protein HMt-2 K24450 hmf; DNA-binding protein D NEF87_003445 DNA-binding protein HMt-2 K24450 hmf; DNA-binding protein D NEF87_005108 DNA-binding protein HMt-2 K24450 hmf; DNA-binding protein D NEF87_005109 DNA-binding protein HMt-2 K24450 hmf; DNA-binding protein D NEF87_002845 hypothetical protein K24450 hmf; DNA-binding protein D NEF87_003938 hypothetical protein K24450 hmf; DNA-binding protein D NEF87_001367 Chromosome partition protein Smc K03529 smc; chromosome segregation protein D NEF87_002456 Chromosome partition protein Smc K03529 smc; chromosome segregation protein D NEF87_001364 Segregation and condensation protein B K06024 scpB; segregation and condensation protein B D NEF87_002886 Segregation and condensation protein B K06024 scpB; segregation and condensation protein B D NEF87_002656 Cell division protein FtsZ 1 K03531 ftsZ; cell division protein FtsZ D NEF87_000371 Tyrosine recombinase XerA K04763 xerD; integrase/recombinase XerD D NEF87_003277 Iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:lob03400] D NEF87_002117 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NEF87_000245 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D NEF87_002953 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D NEF87_001604 Endonuclease III K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D NEF87_000372 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D NEF87_003761 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D NEF87_003020 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_004523 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D NEF87_001001 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D NEF87_004777 3'-flap repair endonuclease Xpf K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D NEF87_002413 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NEF87_003722 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NEF87_002344 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D NEF87_002442 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D NEF87_001159 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D NEF87_004640 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D NEF87_001430 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D NEF87_003815 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D NEF87_001183 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D NEF87_001184 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D NEF87_002977 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D NEF87_004851 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NEF87_002614 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D NEF87_002315 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D NEF87_004671 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D NEF87_002588 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D NEF87_002362 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D NEF87_002341 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D NEF87_000945 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D NEF87_003267 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03547 sbcD; DNA repair protein SbcD/Mre11 D NEF87_001505 Protein RecA K04483 radA; DNA repair protein RadA D NEF87_003583 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D NEF87_004782 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D NEF87_002741 hypothetical protein K04483 radA; DNA repair protein RadA D NEF87_003587 hypothetical protein K04484 radB; DNA repair protein RadB D NEF87_004403 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D NEF87_004779 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D NEF87_004799 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D NEF87_004585 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D NEF87_004584 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D NEF87_005056 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D NEF87_004381 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] D NEF87_004630 DNA repair protein NreA K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:lob03029] D NEF87_002824 Ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D NEF87_001509 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_004937 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D NEF87_001120 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_001823 Isoleucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D NEF87_004429 hypothetical protein K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D NEF87_003719 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D NEF87_001379 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NEF87_004109 Protein GrpE K03687 GRPE; molecular chaperone GrpE D NEF87_001380 Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D NEF87_001686 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_003752 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000102 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000362 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_003277 Iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D NEF87_004719 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:lob02000] D NEF87_000653 Vitamin B12 import ATP-binding protein BtuD K24708 K24708; ATP-binding cassette, subfamily B, putative efflux pump [EC:7.6.2.-] D NEF87_002517 Vitamin B12 import ATP-binding protein BtuD K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D NEF87_001787 Vitamin B12 import ATP-binding protein BtuD K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D NEF87_001788 Vitamin B12 import ATP-binding protein BtuD K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D NEF87_003391 Vitamin B12 import ATP-binding protein BtuD K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NEF87_004947 Vitamin B12 import ATP-binding protein BtuD K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NEF87_002518 Vitamin B12 import ATP-binding protein BtuD K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NEF87_003970 Vitamin B12 import ATP-binding protein BtuD K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NEF87_000397 Vitamin B12 import ATP-binding protein BtuD K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D NEF87_003909 hypothetical protein K15553 ssuA; sulfonate transport system substrate-binding protein D NEF87_003912 Vitamin B12 import ATP-binding protein BtuD K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D NEF87_002757 Vitamin B12 import ATP-binding protein BtuD K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D NEF87_001519 hypothetical protein K02064 thiB; thiamine transport system substrate-binding protein D NEF87_001518 hypothetical protein K02063 thiP; thiamine transport system permease protein D NEF87_002755 hypothetical protein K02063 thiP; thiamine transport system permease protein D NEF87_001517 Vitamin B12 import ATP-binding protein BtuD K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D NEF87_002756 Trehalose/maltose import ATP-binding protein MalK K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D NEF87_003911 hypothetical protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D NEF87_000548 Trehalose/maltose import ATP-binding protein MalK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D NEF87_003568 Trehalose/maltose-binding protein MalE K10236 thuE; trehalose/maltose transport system substrate-binding protein D NEF87_000550 Trehalose/maltose-binding protein MalE K10236 thuE; trehalose/maltose transport system substrate-binding protein D NEF87_004063 hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein D NEF87_004065 Trehalose/maltose import ATP-binding protein MalK K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D NEF87_002475 hypothetical protein K10037 glnP; glutamine transport system permease protein D NEF87_002476 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D NEF87_002474 Trehalose/maltose import ATP-binding protein MalK K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D NEF87_000726 Vitamin B12 import ATP-binding protein BtuD K15583 oppD; oligopeptide transport system ATP-binding protein D NEF87_002287 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000125 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000628 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_000722 hypothetical protein K12368 dppA; dipeptide transport system substrate-binding protein D NEF87_002208 hypothetical protein K12369 dppB; dipeptide transport system permease protein D NEF87_000724 hypothetical protein K12369 dppB; dipeptide transport system permease protein D NEF87_001626 hypothetical protein K12370 dppC; dipeptide transport system permease protein D NEF87_002207 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_002286 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_003045 HTH-type transcriptional regulator SgrR K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_003070 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_002327 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_000101 HTH-type transcriptional regulator SgrR K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_000626 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_000627 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D NEF87_001627 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D NEF87_003071 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D NEF87_002326 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D NEF87_003072 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D NEF87_002325 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D NEF87_000725 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D NEF87_003073 Vitamin B12 import ATP-binding protein BtuD K02031 ddpD; peptide/nickel transport system ATP-binding protein D NEF87_002324 Vitamin B12 import ATP-binding protein BtuD K02031 ddpD; peptide/nickel transport system ATP-binding protein D NEF87_003074 Trehalose/maltose import ATP-binding protein MalK K02032 ddpF; peptide/nickel transport system ATP-binding protein D NEF87_002323 Trehalose/maltose import ATP-binding protein MalK K02032 ddpF; peptide/nickel transport system ATP-binding protein D NEF87_000727 Glucose import ATP-binding protein GlcV K02032 ddpF; peptide/nickel transport system ATP-binding protein D NEF87_004877 Cobalamin import system permease protein BtuC K02015 ABC.FEV.P; iron complex transport system permease protein D NEF87_004878 Cobalamin-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D NEF87_004876 Vitamin B12 import ATP-binding protein BtuD K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D NEF87_004077 hypothetical protein K19976 mntB; manganese transport system permease protein D NEF87_004075 hypothetical protein K09815 znuA; zinc transport system substrate-binding protein D NEF87_004078 putative ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D NEF87_000951 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D NEF87_000950 hypothetical protein K02008 cbiQ; cobalt/nickel transport system permease protein D NEF87_000952 Cobalt transport protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D NEF87_000949 Glucose import ATP-binding protein GlcV K02006 cbiO; cobalt/nickel transport system ATP-binding protein D NEF87_002264 Energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D NEF87_002263 Vitamin B12 import ATP-binding protein BtuD K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D NEF87_005000 Vitamin B12 import ATP-binding protein BtuD K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D NEF87_004276 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein D NEF87_004275 Vitamin B12 import ATP-binding protein BtuD K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D NEF87_001605 hypothetical protein K25180 ybhR; drug efflux transport system permease protein D NEF87_001921 hypothetical protein K25181 ybhS; drug efflux transport system permease protein D NEF87_000429 hypothetical protein K25181 ybhS; drug efflux transport system permease protein D NEF87_000871 hypothetical protein K25147 berB; beta-exotoxin I transport system permease protein D NEF87_003264 hypothetical protein K25147 berB; beta-exotoxin I transport system permease protein D NEF87_000872 Vitamin B12 import ATP-binding protein BtuD K25148 berA; beta-exotoxin I transport system ATP-binding protein D NEF87_003265 Vitamin B12 import ATP-binding protein BtuD K25148 berA; beta-exotoxin I transport system ATP-binding protein D NEF87_000764 hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein D NEF87_000765 putative ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D NEF87_004693 Vitamin B12 import ATP-binding protein BtuD K24949 yknY; antimicrobial peptide resistance transport system ATP-binding protein [EC:7.6.2.-] D NEF87_000675 putative ABC transporter ATP-binding protein K24949 yknY; antimicrobial peptide resistance transport system ATP-binding protein [EC:7.6.2.-] D NEF87_001524 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D NEF87_002162 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D NEF87_003379 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D NEF87_005091 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D NEF87_000428 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D NEF87_000543 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D NEF87_001523 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_001606 Trehalose/maltose import ATP-binding protein MalK K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_001920 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_002161 Glucose import ATP-binding protein GlcV K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_002193 Glucose import ATP-binding protein GlcV K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_003380 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_004990 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_005092 Glucose import ATP-binding protein GlcV K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_002578 Trehalose/maltose import ATP-binding protein MalK K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_000427 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_000539 Trehalose/maltose import ATP-binding protein MalK K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_000542 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_000569 Trehalose/maltose import ATP-binding protein MalK K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_000681 Vitamin B12 import ATP-binding protein BtuD K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_000752 Trehalose/maltose import ATP-binding protein MalK K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D NEF87_001142 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D NEF87_003078 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D NEF87_003146 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D NEF87_004156 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D NEF87_000676 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D NEF87_000677 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D NEF87_000845 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_000850 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_000986 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_001143 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_001423 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_001664 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_001748 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_001750 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_002118 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_003079 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_003117 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_003145 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_003228 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_003436 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_003438 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_004680 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_004682 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_004160 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_004356 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_000119 Vitamin B12 import ATP-binding protein BtuD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_000559 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D NEF87_002931 putative branched-chain amino acid transport ATP-binding protein LivG K09013 sufC; Fe-S cluster assembly ATP-binding protein D NEF87_001712 hypothetical protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D NEF87_002923 hypothetical protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D NEF87_004221 hypothetical protein K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D NEF87_001372 hypothetical protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D NEF87_000077 Multidrug resistance protein MdtG K08153 blt; MFS transporter, DHA1 family, multidrug resistance protein D NEF87_001547 hypothetical protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D NEF87_003242 hypothetical protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D NEF87_001073 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_001609 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002125 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002133 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002241 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002991 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_003179 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_003627 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000138 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000139 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000236 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000298 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_004687 hypothetical protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein D NEF87_003497 hypothetical protein K06902 UMF1; MFS transporter, UMF1 family D NEF87_003499 Calcium-gated potassium channel MthK K10716 kch; voltage-gated potassium channel D NEF87_002754 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D NEF87_003361 hypothetical protein K03284 corA; magnesium transporter D NEF87_000580 Zinc transport protein ZntB K03284 corA; magnesium transporter D NEF87_005008 Putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter D NEF87_005009 Putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter D NEF87_003863 Putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter D NEF87_001021 Zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family D NEF87_003848 Zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family D NEF87_000984 hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family D NEF87_004751 hypothetical protein K03303 lutP; lactate permease D NEF87_001702 hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease D NEF87_000992 Voltage-gated ClC-type chloride channel ClcB K03281 clcA; chloride channel protein, CIC family D NEF87_001171 Putative arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D NEF87_000340 hypothetical protein K03325 ACR3; arsenite transporter D NEF87_001472 hypothetical protein K24180 mleP; malate permease and related proteins D NEF87_001868 queuosine precursor transporter K09125 yhhQ; queuosine precursor transporter D NEF87_000293 hypothetical protein K22736 VIT; vacuolar iron transporter family protein D NEF87_001645 manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein D NEF87_004823 manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein D NEF87_001646 hypothetical protein K07243 FTR; high-affinity iron transporter D NEF87_003575 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D NEF87_000743 K(+)-stimulated pyrophosphate-energized sodium pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D NEF87_000747 K(+)-stimulated pyrophosphate-energized sodium pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D NEF87_001229 hypothetical protein K06196 ccdA; cytochrome c-type biogenesis protein D NEF87_004120 hypothetical protein K04758 feoA; ferrous iron transport protein A D NEF87_004119 Fe(2+) transporter FeoB K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:lob02044] D NEF87_004451 hypothetical protein K07325 flaB; archaeal flagellin FlaB D NEF87_004453 hypothetical protein K07325 flaB; archaeal flagellin FlaB D NEF87_000699 Putative flagella-related protein H K07331 flaH; archaeal flagellar protein FlaH D NEF87_000698 hypothetical protein K07332 flaI; archaeal flagellar protein FlaI D NEF87_000697 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D NEF87_000830 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D NEF87_000013 hypothetical protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D NEF87_000442 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D NEF87_003013 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D NEF87_003504 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_004017 Signal recognition particle 54 kDa protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D NEF87_001168 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D NEF87_001169 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D NEF87_004236 hypothetical protein K03105 SRP19; signal recognition particle subunit SRP19 D NEF87_000105 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:lob02042] D NEF87_000900 hypothetical protein K11068 hlyIII; hemolysin III D NEF87_001754 hypothetical protein K11068 hlyIII; hemolysin III D NEF87_003327 hypothetical protein K11068 hlyIII; hemolysin III D NEF87_004372 hypothetical protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:lob02022] D NEF87_000981 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003886 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000407 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000982 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_003887 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000398 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000980 Protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:lob02035] D NEF87_000981 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003886 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_000407 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D NEF87_003885 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_003888 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_000406 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D NEF87_000970 hypothetical protein K03410 cheC; chemotaxis protein CheC D NEF87_000399 hypothetical protein K03410 cheC; chemotaxis protein CheC D NEF87_000978 Chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D NEF87_004496 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_002446 Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_004366 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D NEF87_000980 Protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D NEF87_000982 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_003887 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_000398 Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D NEF87_001961 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_001962 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_001963 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003407 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002346 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_002468 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_003889 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D NEF87_004451 hypothetical protein K07325 flaB; archaeal flagellin FlaB D NEF87_004453 hypothetical protein K07325 flaB; archaeal flagellin FlaB D NEF87_000699 Putative flagella-related protein H K07331 flaH; archaeal flagellar protein FlaH D NEF87_000698 hypothetical protein K07332 flaI; archaeal flagellar protein FlaI D NEF87_000697 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D NEF87_000830 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins [BR:lob03037] D NEF87_005051 hypothetical protein K10419 DYNLRB; dynein light chain roadblock-type C 04812 Cytoskeleton proteins [BR:lob04812] D NEF87_005051 hypothetical protein K10419 DYNLRB; dynein light chain roadblock-type D NEF87_004151 hypothetical protein K06990 MEMO1; MEMO1 family protein D NEF87_003313 hypothetical protein K18641 K18641; crenactin D NEF87_002656 Cell division protein FtsZ 1 K03531 ftsZ; cell division protein FtsZ C 04147 Exosome [BR:lob04147] D NEF87_004719 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D NEF87_001960 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D NEF87_004364 D-erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D NEF87_004365 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D NEF87_004534 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D NEF87_000274 hypothetical protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D NEF87_003095 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D NEF87_001928 Elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D NEF87_001175 Elongation factor 2 K03234 EEF2; elongation factor 2 D NEF87_004973 Elongation factor 2 K03234 EEF2; elongation factor 2 D NEF87_001379 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D NEF87_003874 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D NEF87_001438 Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D NEF87_001301 hypothetical protein K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D NEF87_005018 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004010 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_004092 VCP-like ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D NEF87_002738 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D NEF87_001758 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_003461 Acetyl-coenzyme A synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004471 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_004472 2-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000326 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_000588 4-hydroxybutyrate--CoA ligase 2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D NEF87_001581 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002392 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002423 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_002606 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D NEF87_003700 S-inosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D NEF87_001444 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D NEF87_002751 Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D NEF87_001307 hypothetical protein K01482 DDAH; dimethylargininase [EC:3.5.3.18] D NEF87_002181 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D NEF87_004070 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D NEF87_001353 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_001499 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D NEF87_002044 Glyoxylate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D NEF87_001437 Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D NEF87_001464 hypothetical protein K12188 SNF8; ESCRT-II complex subunit VPS22 D NEF87_001197 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D NEF87_004430 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004432 Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D NEF87_004508 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:lob02048] D NEF87_002341 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D NEF87_003463 Modification methylase MjaV K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D NEF87_004738 hypothetical protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D NEF87_001010 Modification methylase MthZI K24451 zim; modification methylase D NEF87_001011 hypothetical protein K24451 zim; modification methylase D NEF87_000384 hypothetical protein K24451 zim; modification methylase D NEF87_000643 Modification methylase MthZI K24451 zim; modification methylase D NEF87_003352 hypothetical protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D NEF87_003236 hypothetical protein K06218 relE; mRNA interferase RelE/StbE D NEF87_003271 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D NEF87_002733 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D NEF87_002656 Cell division protein FtsZ 1 K03531 ftsZ; cell division protein FtsZ D NEF87_001985 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D NEF87_004012 Endoribonuclease Nob1 K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] D NEF87_001686 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_003752 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000102 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D NEF87_000362 Cysteine desulfurase IscS 2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:lob01504] D NEF87_002123 hypothetical protein K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81] D NEF87_003036 hypothetical protein K17910 aphD; aminoglycoside 2''-phosphotransferase [EC:2.7.1.190] D NEF87_001372 hypothetical protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D NEF87_001073 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_001609 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002125 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002133 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002241 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_002991 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_003179 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_003627 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000138 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000139 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000236 hypothetical protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D NEF87_000298 Enterobactin exporter EntS K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:lob00537] D NEF87_000274 hypothetical protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D NEF87_003283 ADP-L-glycero-D-manno-heptose-6-epimerase K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219] D NEF87_003802 hypothetical protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D NEF87_001114 hypothetical protein K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D NEF87_004746 Indolepyruvate oxidoreductase subunit IorA K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D NEF87_005012 Indolepyruvate oxidoreductase subunit IorA K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D NEF87_000735 Indolepyruvate oxidoreductase subunit IorA K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D NEF87_004745 hypothetical protein K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D NEF87_005011 Indolepyruvate oxidoreductase subunit IorB K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D NEF87_000734 Indolepyruvate oxidoreductase subunit IorB K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D NEF87_000259 hypothetical protein K04940 odh; opine dehydrogenase [EC:1.5.1.28] D NEF87_000912 NADPH dehydrogenase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D NEF87_000297 Dihydrolipoyl dehydrogenase K17883 mtr; mycothione reductase [EC:1.8.1.15] D NEF87_000447 Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D NEF87_003805 Peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D NEF87_000683 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D NEF87_000302 hypothetical protein K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25] D NEF87_000342 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D NEF87_000309 hypothetical protein K05919 dfx; superoxide reductase [EC:1.15.1.2] D NEF87_001683 hypothetical protein K02217 ftnA; ferritin [EC:1.16.3.2] D NEF87_003530 Sulfide dehydrogenase subunit beta K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D NEF87_001008 Arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D NEF87_003954 Arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D NEF87_003027 7,8-dihydro-6-hydroxymethylpterin dimethyltransferase K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D NEF87_002434 Choline trimethylamine-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D NEF87_002896 hypothetical protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D NEF87_000393 Choline trimethylamine-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D NEF87_002667 Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D NEF87_002934 Thymidylate synthase K22882 K22882; thymidylate synthase [EC:2.1.1.-] D NEF87_001354 hypothetical protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D NEF87_001705 Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D NEF87_001698 hypothetical protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D NEF87_003382 hypothetical protein K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D NEF87_004286 hypothetical protein K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D NEF87_002060 putative deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D NEF87_000133 putative deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D NEF87_000160 N(4)-bis(aminopropyl)spermidine synthase K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128] D NEF87_004378 N5-carboxyaminoimidazole ribonucleotide mutase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D NEF87_001172 hypothetical protein K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-] D NEF87_002600 Glutamate-1-semialdehyde 2,1-aminomutase K21585 kat; 3-aminobutanoyl-CoA transaminase [EC:2.6.1.111] D NEF87_001173 hypothetical protein K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-] D NEF87_002832 hypothetical protein K18678 VTE5; phytol kinase [EC:2.7.1.182] D NEF87_003356 Homoserine kinase K23983 amiN; amicoumacin kinase [EC:2.7.1.230] D NEF87_002388 Stress response kinase A K23983 amiN; amicoumacin kinase [EC:2.7.1.230] D NEF87_004490 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D NEF87_004220 hypothetical protein K01009 E2.7.7.103; L-glutamine-phosphate cytidylyltransferase [EC:2.7.7.103] D NEF87_004257 hypothetical protein K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D NEF87_001080 hypothetical protein K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D NEF87_003274 hypothetical protein K03928 yvaK; carboxylesterase [EC:3.1.1.1] D NEF87_004116 hypothetical protein K03928 yvaK; carboxylesterase [EC:3.1.1.1] D NEF87_000665 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D NEF87_003414 Damage-control phosphatase K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D NEF87_001857 D-aminoacyl-tRNA deacylase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D NEF87_005021 D-aminoacyl-tRNA deacylase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D NEF87_003952 D-aminoacyl-tRNA deacylase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D NEF87_002515 hypothetical protein K15922 yihQ; sulfoquinovosidase [EC:3.2.1.199] D NEF87_002911 hypothetical protein K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225] D NEF87_003207 Putative D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D NEF87_005046 hypothetical protein K22408 dac; N,N'-diacetylchitobiose non-reducing end deacetylase [EC:3.5.1.136] D NEF87_001085 Diacetylchitobiose deacetylase K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D NEF87_004983 Diacetylchitobiose deacetylase K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D NEF87_005042 hypothetical protein K22135 bshB2; N-acetylglucosamine malate deacetylase 2 [EC:3.5.1.-] D NEF87_001494 2-iminobutanoate/2-iminopropanoate deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D NEF87_003686 2-iminobutanoate/2-iminopropanoate deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D NEF87_000085 RutC family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D NEF87_004460 hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D NEF87_002408 hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D NEF87_003974 hypothetical protein K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D NEF87_001844 hypothetical protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D NEF87_004183 NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D NEF87_003286 hypothetical protein K20026 hadC; (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit [EC:4.2.1.157] D NEF87_004710 Tryptophan synthase beta chain K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D NEF87_001689 hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D NEF87_003659 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel insertion protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D NEF87_001847 RNA 3'-terminal phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D NEF87_001125 Potassium-transporting ATPase ATP-binding subunit K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D NEF87_001458 Potassium-transporting ATPase ATP-binding subunit K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D NEF87_001576 Potassium-transporting ATPase ATP-binding subunit K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D NEF87_002584 Potassium-transporting ATPase ATP-binding subunit K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D NEF87_004246 Potassium-transporting ATPase ATP-binding subunit K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D NEF87_001624 Copper-exporting P-type ATPase B K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D NEF87_000164 Sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D NEF87_004391 hypothetical protein K04768 acuC; acetoin utilization protein AcuC C 99982 Energy metabolism D NEF87_001684 Iron-sulfur cluster assembly scaffold protein IscU 2 K04488 iscU; nitrogen fixation protein NifU and related proteins D NEF87_003828 hypothetical protein K04488 iscU; nitrogen fixation protein NifU and related proteins D NEF87_000363 Ferredoxin--NADP reductase K04488 iscU; nitrogen fixation protein NifU and related proteins D NEF87_003746 hypothetical protein K04748 norQ; nitric oxide reductase NorQ protein D NEF87_003927 hypothetical protein K04748 norQ; nitric oxide reductase NorQ protein D NEF87_003656 hypothetical protein K02574 napH; ferredoxin-type protein NapH D NEF87_003740 hypothetical protein K02574 napH; ferredoxin-type protein NapH D NEF87_000347 hypothetical protein K02574 napH; ferredoxin-type protein NapH C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D NEF87_004052 Pyridoxal phosphate homeostasis protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism C 99987 Cofactor metabolism D NEF87_001407 hypothetical protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D NEF87_002609 hypothetical protein K03627 MBF1; putative transcription factor D NEF87_001889 hypothetical protein K03622 ssh10b; archaea-specific DNA-binding protein D NEF87_001389 hypothetical protein K03704 cspA; cold shock protein D NEF87_004826 hypothetical protein K03704 cspA; cold shock protein D NEF87_002461 hypothetical protein K03704 cspA; cold shock protein D NEF87_000253 hypothetical protein K03704 cspA; cold shock protein D NEF87_000278 hypothetical protein K03704 cspA; cold shock protein D NEF87_000279 hypothetical protein K03704 cspA; cold shock protein D NEF87_001883 Putative snRNP Sm-like protein K04796 RUXX; small nuclear ribonucleoprotein D NEF87_002063 Putative snRNP Sm-like protein K04796 RUXX; small nuclear ribonucleoprotein D NEF87_004125 hypothetical protein K04796 RUXX; small nuclear ribonucleoprotein D NEF87_004469 Polyribonucleotide nucleotidyltransferase K06959 tex; protein Tex C 99974 Translation D NEF87_002939 hypothetical protein K07572 K07572; putative nucleotide binding protein D NEF87_002749 Ribonuclease J K07577 K07577; putative mRNA 3-end processing factor D NEF87_001959 Release factor glutamine methyltransferase K07579 K07579; putative methylase D NEF87_002356 hypothetical protein K07580 K07580; Zn-ribbon RNA-binding protein D NEF87_002826 RNA-binding protein K07581 K07581; RNA-binding protein C 99975 Protein processing D NEF87_001634 hypothetical protein K04653 hypC; hydrogenase expression/formation protein HypC D NEF87_001625 hypothetical protein K04654 hypD; hydrogenase expression/formation protein HypD D NEF87_001631 Thiamine-monophosphate kinase K04655 hypE; hydrogenase expression/formation protein HypE D NEF87_001632 hypothetical protein K04656 hypF; hydrogenase maturation protein HypF D NEF87_004230 Thiamine-monophosphate kinase K07388 K07388; hydrogenase expression/formation protein D NEF87_004406 ATP-dependent zinc metalloprotease FtsH K07392 PRS2; AAA family ATPase D NEF87_002626 tRNA-guanine(15) transglycosylase K07398 K07398; conserved protein with predicted RNA binding PUA domain C 99976 Replication and repair D NEF87_004018 Methylated-DNA--protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D NEF87_000485 hypothetical protein K07454 K07454; putative restriction endonuclease D NEF87_000007 Endonuclease III K07457 K07457; endonuclease III related protein D NEF87_004852 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D NEF87_005020 hypothetical protein K07461 K07461; putative endonuclease D NEF87_002785 hypothetical protein K07461 K07461; putative endonuclease D NEF87_000049 hypothetical protein K07463 K07463; archaea-specific RecJ-like exonuclease D NEF87_004250 hypothetical protein K07477 K07477; translin D NEF87_003331 hypothetical protein K07486 K07486; transposase D NEF87_004492 hypothetical protein K07486 K07486; transposase C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D NEF87_001258 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_001723 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_001970 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_002092 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_003357 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_003464 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_002411 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_003913 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_003919 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_000662 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_000817 hypothetical protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D NEF87_004473 hypothetical protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D NEF87_004934 hypothetical protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D NEF87_002960 hypothetical protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D NEF87_001121 Cation/acetate symporter ActP K03307 TC.SSS; solute:Na+ symporter, SSS family C 99978 Cell growth C 99993 Cell motility D NEF87_004594 hypothetical protein K24105 mglA; mutual gliding-motility protein MglA D NEF87_004651 hypothetical protein K24105 mglA; mutual gliding-motility protein MglA D NEF87_004786 hypothetical protein K24105 mglA; mutual gliding-motility protein MglA D NEF87_005116 hypothetical protein K24105 mglA; mutual gliding-motility protein MglA D NEF87_002703 hypothetical protein K24105 mglA; mutual gliding-motility protein MglA D NEF87_002828 hypothetical protein K24105 mglA; mutual gliding-motility protein MglA C 99995 Signaling proteins D NEF87_001163 DNA-binding protein K06875 PDCD5; programmed cell death protein 5 D NEF87_004165 hypothetical protein K23307 gvpD; gas vesicle operon resressor C 99992 Structural proteins C 99994 Others D NEF87_004066 hypothetical protein K02039 phoU; phosphate transport system protein D NEF87_004939 Bacteriohemerythrin K07216 hr; hemerythrin B B 09194 Poorly characterized C 99996 General function prediction only D NEF87_000660 putative KH and PIN-domain containing protein K06865 K06865; ATPase D NEF87_002921 hypothetical protein K06878 K06878; tRNA-binding protein D NEF87_000513 hypothetical protein K07001 K07001; NTE family protein D NEF87_001324 Phosphoglycolate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D NEF87_001851 Phosphoglycolate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D NEF87_003293 Glyceraldehyde 3-phosphate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D NEF87_004678 Phosphoglycolate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D NEF87_002818 Glyceraldehyde 3-phosphate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D NEF87_000106 Phosphoglycolate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D NEF87_002932 hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB D NEF87_002707 hypothetical protein K07143 K07143; UPF0148 protein C 99997 Function unknown D NEF87_004525 hypothetical protein K06869 K06869; uncharacterized protein D NEF87_001704 hypothetical protein K06873 K06873; uncharacterized protein D NEF87_001707 hypothetical protein K06873 K06873; uncharacterized protein D NEF87_001439 hypothetical protein K06883 K06883; uncharacterized protein D NEF87_001994 hypothetical protein K06883 K06883; uncharacterized protein D NEF87_002639 hypothetical protein K06883 K06883; uncharacterized protein D NEF87_003777 hypothetical protein K06883 K06883; uncharacterized protein D NEF87_002641 hypothetical protein K06885 K06885; uncharacterized protein D NEF87_000322 hypothetical protein K06888 K06888; uncharacterized protein D NEF87_001608 hypothetical protein K06889 K06889; uncharacterized protein D NEF87_001943 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K06889 K06889; uncharacterized protein D NEF87_002025 hypothetical protein K06889 K06889; uncharacterized protein D NEF87_001805 hypothetical protein K06933 K06933; uncharacterized protein D NEF87_002272 GTP 3',8-cyclase K06935 K06935; uncharacterized protein D NEF87_001182 hypothetical protein K06940 K06940; uncharacterized protein D NEF87_004645 hypothetical protein K06940 K06940; uncharacterized protein D NEF87_002725 hypothetical protein K06940 K06940; uncharacterized protein D NEF87_001903 hypothetical protein K06945 K06945; uncharacterized protein D NEF87_004961 hypothetical protein K06945 K06945; uncharacterized protein D NEF87_005117 hypothetical protein K06945 K06945; uncharacterized protein D NEF87_001440 hypothetical protein K06950 K06950; uncharacterized protein D NEF87_003674 hypothetical protein K06950 K06950; uncharacterized protein D NEF87_004717 hypothetical protein K06950 K06950; uncharacterized protein D NEF87_000999 hypothetical protein K06996 K06996; uncharacterized protein D NEF87_003872 hypothetical protein K07005 K07005; uncharacterized protein D NEF87_005024 hypothetical protein K07013 K07013; uncharacterized protein D NEF87_000167 hypothetical protein K07018 K07018; uncharacterized protein D NEF87_000168 hypothetical protein K07018 K07018; uncharacterized protein D NEF87_003655 Ribonuclease J K07041 K07041; uncharacterized protein D NEF87_001880 hypothetical protein K07051 K07051; uncharacterized protein D NEF87_004859 hypothetical protein K07064 K07064; uncharacterized protein D NEF87_002278 hypothetical protein K07073 K07073; uncharacterized protein D NEF87_001257 hypothetical protein K07079 K07079; uncharacterized protein D NEF87_003129 hypothetical protein K07079 K07079; uncharacterized protein D NEF87_003273 hypothetical protein K07079 K07079; uncharacterized protein D NEF87_003629 hypothetical protein K07079 K07079; uncharacterized protein D NEF87_002041 hypothetical protein K07090 K07090; uncharacterized protein D NEF87_002087 hypothetical protein K07090 K07090; uncharacterized protein D NEF87_004744 hypothetical protein K07090 K07090; uncharacterized protein D NEF87_000361 hypothetical protein K07092 K07092; uncharacterized protein D NEF87_003784 Phosphodiesterase K07095 K07095; uncharacterized protein D NEF87_003999 hypothetical protein K07095 K07095; uncharacterized protein D NEF87_003279 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K07096 K07096; uncharacterized protein D NEF87_004154 hypothetical protein K07096 K07096; uncharacterized protein D NEF87_002269 Xanthine phosphoribosyltransferase K07101 K07101; uncharacterized protein D NEF87_001906 hypothetical protein K07112 K07112; uncharacterized protein D NEF87_004664 Thiamine-monophosphate kinase K07123 K07123; uncharacterized protein D NEF87_000536 hypothetical protein K07124 K07124; uncharacterized protein D NEF87_002277 hypothetical protein K07129 K07129; uncharacterized protein D NEF87_001343 hypothetical protein K07131 K07131; uncharacterized protein D NEF87_001506 hypothetical protein K07131 K07131; uncharacterized protein D NEF87_004545 hypothetical protein K07131 K07131; uncharacterized protein D NEF87_002744 hypothetical protein K07131 K07131; uncharacterized protein D NEF87_003734 hypothetical protein K07131 K07131; uncharacterized protein D NEF87_004185 hypothetical protein K07131 K07131; uncharacterized protein D NEF87_002302 Ion-translocating oxidoreductase complex subunit B K07138 K07138; uncharacterized protein D NEF87_003622 hypothetical protein K07158 K07158; uncharacterized protein D NEF87_002669 hypothetical protein K07159 K07159; uncharacterized protein D NEF87_001954 hypothetical protein K09120 K09120; uncharacterized protein D NEF87_004466 hypothetical protein K09122 K09122; uncharacterized protein D NEF87_000993 hypothetical protein K09126 K09126; uncharacterized protein D NEF87_003371 hypothetical protein K09131 K09131; uncharacterized protein D NEF87_003865 hypothetical protein K09133 K09133; uncharacterized protein D NEF87_004020 hypothetical protein K09141 K09141; uncharacterized protein D NEF87_002660 hypothetical protein K09148 K09148; uncharacterized protein D NEF87_001112 hypothetical protein K09155 K09155; uncharacterized protein D NEF87_004980 hypothetical protein K09157 K09157; uncharacterized protein D NEF87_002441 hypothetical protein K09707 K09707; uncharacterized protein D NEF87_001595 hypothetical protein K09715 K09715; uncharacterized protein D NEF87_003372 hypothetical protein K09717 K09717; uncharacterized protein D NEF87_004214 hypothetical protein K09717 K09717; uncharacterized protein D NEF87_000065 hypothetical protein K09721 K09721; uncharacterized protein D NEF87_003614 hypothetical protein K09726 K09726; uncharacterized protein D NEF87_003694 hypothetical protein K09730 K09730; uncharacterized protein D NEF87_001726 hypothetical protein K09732 K09732; uncharacterized protein D NEF87_004243 hypothetical protein K09736 K09736; uncharacterized protein D NEF87_002807 hypothetical protein K09738 K09738; uncharacterized protein D NEF87_002190 hypothetical protein K09780 K09780; uncharacterized protein D NEF87_004759 hypothetical protein K09927 K09927; uncharacterized protein D NEF87_004235 hypothetical protein K09955 K09955; uncharacterized protein D NEF87_004601 hypothetical protein K09989 K09989; uncharacterized protein D NEF87_003797 hypothetical protein K01163 K01163; uncharacterized protein D NEF87_003178 hypothetical protein K07502 yprB; uncharacterized protein D NEF87_004465 hypothetical protein K07502 yprB; uncharacterized protein D NEF87_004474 hypothetical protein K07220 K07220; uncharacterized protein D NEF87_004933 hypothetical protein K07220 K07220; uncharacterized protein D NEF87_002758 hypothetical protein K07220 K07220; uncharacterized protein D NEF87_002961 hypothetical protein K07220 K07220; uncharacterized protein D NEF87_004133 hypothetical protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 20, 2024