+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Lokiarchaeum ossiferum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NEF87_002117 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NEF87_000245 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NEF87_002953 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NEF87_001604 Endonuclease III K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NEF87_000372 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E NEF87_003761 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E NEF87_003796 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E NEF87_004011 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E NEF87_003020 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E NEF87_004523 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D Other NER factors E NEF87_001001 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E NEF87_004777 3'-flap repair endonuclease Xpf K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E NEF87_004610 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E NEF87_002666 Replication factor A K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D NEF87_001556 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D NEF87_002413 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NEF87_003722 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NEF87_002117 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NEF87_000245 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NEF87_002953 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NEF87_001604 Endonuclease III K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NEF87_002344 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E NEF87_002442 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E NEF87_001159 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NEF87_003761 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NEF87_004640 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NEF87_001430 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E NEF87_003815 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E NEF87_001183 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E NEF87_001184 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E NEF87_002977 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E NEF87_004851 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NEF87_002614 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NEF87_002315 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E NEF87_004671 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 E NEF87_002588 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E NEF87_002362 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E NEF87_004851 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NEF87_002614 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NEF87_002341 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NEF87_000945 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E NEF87_003267 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E NEF87_001505 Protein RecA K04483 radA; DNA repair protein RadA E NEF87_003583 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E NEF87_004782 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E NEF87_002741 hypothetical protein K04483 radA; DNA repair protein RadA E NEF87_003587 hypothetical protein K04484 radB; DNA repair protein RadB E NEF87_000945 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E NEF87_003267 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03547 sbcD; DNA repair protein SbcD/Mre11 E NEF87_004403 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E NEF87_004779 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E NEF87_004799 hypothetical protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NEF87_004585 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NEF87_004584 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F NEF87_005056 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NEF87_001816 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NEF87_003373 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NEF87_002293 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F NEF87_001183 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F NEF87_001184 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NEF87_004381 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D NEF87_002413 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NEF87_003722 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D NEF87_004630 DNA repair protein NreA K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024