+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Lokiarchaeum sp. GC14_75

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Lokiarch_25270 ogt_2; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Lokiarch_32130 ogt_3; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Lokiarch_23680 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Lokiarch_36860 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Lokiarch_28910 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Lokiarch_25730 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E Lokiarch_25940 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E Lokiarch_47590 fen; Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Lokiarch_16670 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E Lokiarch_33990 rpa_2; putative replication protein A K07466 RFA1; replication factor A1 D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E Lokiarch_33990 rpa_2; putative replication protein A K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E Lokiarch_25940 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E Lokiarch_33990 rpa_2; putative replication protein A K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D Lokiarch_25940 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors D Lokiarch_37470 vat_4; Vps4-like ATPase K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Lokiarch_53830 nudF; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lokiarch_40620 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Lokiarch_25270 ogt_2; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Lokiarch_32130 ogt_3; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Lokiarch_23680 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Lokiarch_36860 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Lokiarch_28910 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Lokiarch_20240 tag_1; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Lokiarch_49530 tag_2; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Lokiarch_25730 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Lokiarch_47130 nfo_2; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E Lokiarch_39100 nfi_1; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] E Lokiarch_45560 nfi_2; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Lokiarch_17790 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Lokiarch_30120 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Lokiarch_28440 uvrA_3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E Lokiarch_10770 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E Lokiarch_28450 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E Lokiarch_30210 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Lokiarch_00850 mutS_1; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Lokiarch_18060 mutS_2; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Lokiarch_07110 mutL_1; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL E Lokiarch_10950 mutL_2; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL E Lokiarch_46770 mutL_3; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E Lokiarch_52810 polC_4; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Lokiarch_32000 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Lokiarch_40060 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Lokiarch_45290 dpnM; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Lokiarch_19860 DNA double-strand break repair Rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E Lokiarch_17630 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Lokiarch_17790 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Lokiarch_30120 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E Lokiarch_08050 radA_2; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Lokiarch_25080 radA_5; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Lokiarch_24000 radA_4; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Lokiarch_21880 radA_3; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Lokiarch_38830 radA_6; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Lokiarch_25120 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E Lokiarch_19860 DNA double-strand break repair Rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E Lokiarch_17630 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Lokiarch_43500 gyrB_1; Topoisomerase IIA (DNA gyrase/topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Lokiarch_09080 topA_1; Topoisomerase IA (type III) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Lokiarch_17790 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Lokiarch_30120 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Lokiarch_28440 uvrA_3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F Lokiarch_10770 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F Lokiarch_28450 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Lokiarch_47680 dinB_2; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] D Lokiarch_49880 dinB_3; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D Lokiarch_53830 nudF; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Lokiarch_40620 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D Lokiarch_34980 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024