+F Repair protein KO
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DNA Repair and Recombination Proteins - Candidatus Lokiarchaeum sp. GC14_75
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Lokiarch_25270 ogt_2; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Lokiarch_32130 ogt_3; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Lokiarch_23680 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Lokiarch_36860 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Lokiarch_28910 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Lokiarch_25730 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
E Lokiarch_25940 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
E Lokiarch_47590 fen; Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Lokiarch_16670 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
E Lokiarch_33990 rpa_2; putative replication protein A K07466 RFA1; replication factor A1
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
E Lokiarch_33990 rpa_2; putative replication protein A K07466 RFA1; replication factor A1
D RFC (replication factor C)
D Other MMR factors
E Lokiarch_25940 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
E Lokiarch_33990 rpa_2; putative replication protein A K07466 RFA1; replication factor A1
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
D Lokiarch_25940 pcn; DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
D Lokiarch_37470 vat_4; Vps4-like ATPase K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Lokiarch_53830 nudF; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lokiarch_40620 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Lokiarch_25270 ogt_2; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Lokiarch_32130 ogt_3; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Lokiarch_23680 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Lokiarch_36860 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Lokiarch_28910 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Lokiarch_20240 tag_1; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Lokiarch_49530 tag_2; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Lokiarch_25730 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Lokiarch_47130 nfo_2; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E Lokiarch_39100 nfi_1; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
E Lokiarch_45560 nfi_2; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E Lokiarch_17790 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Lokiarch_30120 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Lokiarch_28440 uvrA_3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E Lokiarch_10770 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E Lokiarch_28450 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E Lokiarch_30210 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Lokiarch_00850 mutS_1; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Lokiarch_18060 mutS_2; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E Lokiarch_07110 mutL_1; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
E Lokiarch_10950 mutL_2; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
E Lokiarch_46770 mutL_3; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E Lokiarch_52810 polC_4; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DNA ligase
E Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Lokiarch_32000 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Lokiarch_40060 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Lokiarch_45290 dpnM; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Lokiarch_19860 DNA double-strand break repair Rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E Lokiarch_17630 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Lokiarch_17790 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Lokiarch_30120 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E Lokiarch_08050 radA_2; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Lokiarch_25080 radA_5; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Lokiarch_24000 radA_4; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Lokiarch_21880 radA_3; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Lokiarch_38830 radA_6; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Lokiarch_25120 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB
E Lokiarch_19860 DNA double-strand break repair Rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E Lokiarch_17630 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Lokiarch_43500 gyrB_1; Topoisomerase IIA (DNA gyrase/topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Lokiarch_09080 topA_1; Topoisomerase IA (type III) K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Lokiarch_17790 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Lokiarch_30120 RecJ-like exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Lokiarch_01740 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F Lokiarch_28440 uvrA_3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F Lokiarch_10770 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F Lokiarch_28450 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Lokiarch_47680 dinB_2; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
D Lokiarch_49880 dinB_3; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D Lokiarch_53830 nudF; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Lokiarch_40620 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
D Lokiarch_34980 hypothetical protein K22585 nreA; DNA repair protein NreA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024