+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lacticaseibacillus paracasei N1115

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E AF91_08935 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AF91_06180 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AF91_02470 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AF91_06460 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E AF91_00740 ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AF91_13530 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_14745 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_12795 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_12930 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_11560 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AF91_14975 methylated-DNA--protein-cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E AF91_08935 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AF91_06180 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AF91_02470 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AF91_01420 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AF91_10645 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AF91_05345 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AF91_06460 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AF91_08900 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AF91_06285 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E AF91_06105 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AF91_08630 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AF91_05340 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AF91_13080 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AF91_09130 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AF91_09135 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AF91_07160 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AF91_08635 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AF91_03875 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AF91_05340 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AF91_08630 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AF91_12460 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AF91_12455 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AF91_12275 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AF91_12775 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F AF91_05750 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AF91_12635 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AF91_10760 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E AF91_10255 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E AF91_10755 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AF91_05700 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AF91_05705 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AF91_07070 DNA polymerase III subunit epsilon K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AF91_06005 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E AF91_14245 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AF91_07240 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AF91_10875 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AF91_08905 DNA polymerase III subunit alpha K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AF91_10910 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AF91_08630 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AF91_08635 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AF91_03875 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AF91_14275 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AF91_14285 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AF91_11160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AF91_03325 ATP-dependent endonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AF91_07380 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AF91_13140 protein RecA K03553 recA; recombination protein RecA E AF91_09300 protein RecA K03553 recA; recombination protein RecA E AF91_10355 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AF91_10350 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AF91_05760 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AF91_02450 DNA repair ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E AF91_02445 exonuclease SbcD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AF91_13140 protein RecA K03553 recA; recombination protein RecA E AF91_09300 protein RecA K03553 recA; recombination protein RecA E AF91_11555 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AF91_14255 recombinase RecF K03629 recF; DNA replication and repair protein RecF E AF91_05815 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AF91_06105 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AF91_06335 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AF91_10900 recombinase RecR K06187 recR; recombination protein RecR E AF91_05725 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AF91_06475 recU; recombinase RecU K03700 recU; recombination protein U E AF91_10355 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AF91_10350 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E AF91_06430 ATP-dependent helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E AF91_06425 ATP-dependent helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E AF91_02450 DNA repair ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E AF91_02445 exonuclease SbcD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AF91_14265 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AF91_14260 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AF91_06875 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AF91_15500 hypothetical protein K03530 hupB; DNA-binding protein HU-beta F AF91_06980 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AF91_09630 recombinase RecT K07455 recT; recombination protein RecT F AF91_04000 hypothetical protein K07455 recT; recombination protein RecT F AF91_11175 recombinase RecT K07455 recT; recombination protein RecT F AF91_06105 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AF91_06335 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AF91_10900 recombinase RecR K06187 recR; recombination protein RecR F AF91_08630 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AF91_07005 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AF91_08495 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AF91_13080 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AF91_09130 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AF91_09135 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AF91_10315 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AF91_08660 type VI secretion protein ImpB K03502 umuC; DNA polymerase V D AF91_15350 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D AF91_15435 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V C Other SOS response factors D AF91_13140 protein RecA K03553 recA; recombination protein RecA D AF91_09300 protein RecA K03553 recA; recombination protein RecA D AF91_02800 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D AF91_05725 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AF91_14275 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AF91_14285 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AF91_11160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AF91_05025 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AF91_06435 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D AF91_13530 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_14745 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_12795 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_12930 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF91_11560 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AF91_06530 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AF91_06525 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D AF91_10305 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D AF91_13590 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024