+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lactiplantibacillus plantarum ST-III
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LPST_C1295 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LPST_C1584 era; GTP-binding protein Era K03595 era; GTPase
C LPST_C1726 obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LPST_C1633 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C LPST_C1264 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C LPST_C0516 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LPST_C1065 rsuA; pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D LPST_C0384 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LPST_C1282 sunL; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LPST_C0529 rsmC; 16S RNA methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D LPST_C1763 probable methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LPST_C1604 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LPST_C2636 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LPST_C1820 mraW; cell division protein MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LPST_C0538 methyltransferase (putative) K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LPST_C1269 hemolysin-like protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D LPST_C1830 rrmA; rRNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D LPST_C0511 trmH; tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LPST_C0036 SPOUT methyltransferase superfamily protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LPST_C2063 conjugal transfer nickase/helicase TraI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D LPST_C1269 hemolysin-like protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LPST_C0924 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LPST_C1516 rluB; pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LPST_C0774 rluE; pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LPST_C1836 rluD2; pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LPST_C1424 rluD1; pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LPST_C2180 rluA; pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C LPST_C0548 rimI1; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LPST_C0549 rimI2; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LPST_C1961 ribosomal protein acetylating enzyme K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C LPST_C2329 ribosomal protein acetylating enzyme K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C LPST_C1302 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C LPST_C1605 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C LPST_C1295 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LPST_C1886 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C LPST_C0510 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C LPST_C0423 rhe1; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C LPST_C1889 rhe3; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C LPST_C1584 era; GTP-binding protein Era K03595 era; GTPase
C LPST_C1285 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LPST_C1343 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LPST_C1509 engA; GTP-binding protein EngA K03977 engA; GTPase
C LPST_C1726 obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C LPST_C1486 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
C LPST_C0702 GTPase K03665 hflX; GTPase
C LPST_C1205 ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C LPST_C1976 SUA5 family translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LPST_C1602 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LPST_C1629 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LPST_C1634 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C LPST_C0003 hypothetical protein K14761 rlbA; ribosome-associated protein
C LPST_C1209 hypothetical protein K09710 ybeB; ribosome-associated protein
C LPST_C1586 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C LPST_C1206 hypothetical protein K07574 yhbY; RNA-binding protein
C LPST_C0564 ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C LPST_C2631 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C LPST_C1212 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024