+E Ribosome biogenesis KO
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Ribosome Biogenesis - Lacticaseibacillus rhamnosus GG
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D LRHM_1587 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C LRHM_1487 GTP-binding protein Era K03595 era; GTPase
C LRHM_1306 putative GTPase K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C LRHM_1552 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C LRHM_1620 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C LRHM_2210 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D LRHM_0810 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D LRHM_2468 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LRHM_1605 RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LRHM_2181 16S rRNA methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D LRHM_1277 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LRHM_1508 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LRHM_0238 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LRHM_1225 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LRHM_2170 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LRHM_1615 putative rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D LRHM_0834 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D LRHM_2235 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LRHM_2691 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LRHM_1615 putative rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LRHM_0980 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LRHM_1326 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LRHM_0825 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LRHM_1720 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LRHM_1406 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LRHM_1829 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C LRHM_2163 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C LRHM_2754 acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C LRHM_1577 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C LRHM_1509 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C LRHM_1587 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C LRHM_0747 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C LRHM_2236 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C LRHM_2435 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C LRHM_0741 ATP-dependent DNA and RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C LRHM_1487 GTP-binding protein Era K03595 era; GTPase
C LRHM_1602 putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C LRHM_1334 GTP-binding protein EngA K03977 engA; GTPase
C LRHM_1306 putative GTPase K03979 obgE; GTPase [EC:3.6.5.-]
C LRHM_1353 putative GTPase K14540 rbgA; ribosome biogenesis GTPase A
C LRHM_1912 GTP-binding protein K03665 hflX; GTPase
C LRHM_1674 GTP-binding protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C LRHM_1120 translational factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C LRHM_1506 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C LRHM_1548 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C LRHM_1553 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C LRHM_0003 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C LRHM_1670 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C LRHM_1490 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C LRHM_1673 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C LRHM_0853 ribosome-associated protein K05808 hpf; ribosome hibernation promoting factor
C LRHM_0243 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C LRHM_1667 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024