+E Transcription factors KO
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Transcription Factors - Lacticaseibacillus rhamnosus LOCK900
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
D LOCK900_2615 LysR family transcriptional regulator YeiE K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D LOCK900_2667 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D LOCK900_0612 Lactose phosphotransferase system repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D LOCK900_0411 Transcriptional regulator of sugar metabolism K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D LOCK900_1331 Transcriptional repressor of the fructose operon, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D LOCK900_0243 Transcriptional repressor of the myo-inositol catabolic operon DeoR family K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D LOCK900_0274 Transcriptional regulator, DeoR family K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D LOCK900_2314 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D LOCK900_0353 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LOCK900_0403 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LOCK900_0597 Galactose operon repressor, GalR-LacI family of transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LOCK900_0738 Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D LOCK900_2701 Transcriptional repressor of the arabinose operon K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D LOCK900_0549 Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D LOCK900_1802 Transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D LOCK900_0313 Transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D LOCK900_2742 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D LOCK900_2208 Transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D LOCK900_0108 Transcriptional regulator, TetR family K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D LOCK900_1879 Transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D LOCK900_0063 Transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
D LOCK900_0077 Transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
C LuxR family
C MarR family
D LOCK900_0368 Transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D LOCK900_2076 Transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D LOCK900_2660 regulatory protein, MarR K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D LOCK900_0895 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D LOCK900_1642 Transcriptional regulator, repressor of the glutamine synthetase, MerR family K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
C Fur family
D LOCK900_1964 Zinc uptake regulation protein ZUR K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D LOCK900_0793 Peroxide stress regulator PerR, FUR family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D LOCK900_0076 Transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
D LOCK900_2396 putative transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
D LOCK900_1874 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D LOCK900_2345 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D LOCK900_0651 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D LOCK900_0703 Mn-dependent transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D LOCK900_0741 Biotin-protein ligase/Biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D LOCK900_1221 putative transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D LOCK900_2628 Transcriptional regulator, Xre family K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D LOCK900_2299 Positive transcriptional regulator MutR family K20375 ropB; HTH-type transcriptional regulator, pheromone-responsive regulator
D LOCK900_2560 PurR: transcription regulator associated with purine metabolism K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D LOCK900_2324 Sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
D LOCK900_1228 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) K01926 rex; redox-sensing transcriptional repressor
D LOCK900_2209 Redox-sensitive transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D LOCK900_0917 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D LOCK900_2579 Transcriptional regulator, PbsX family K07729 K07729; putative transcriptional regulator
D LOCK900_1904 Transcriptional regulator, PBSX family K07729 K07729; putative transcriptional regulator
D LOCK900_1058 Hypothetical protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D LOCK900_2153 Beta-glucoside bgl operon antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
D LOCK900_2873 Beta-glucoside bgl operon antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
D LOCK900_2881 Mannitol operon activator, BglG family K03483 mtlR; mannitol operon transcriptional activator
D LOCK900_0372 Transcriptional antiterminator and PTS system component IIA K03483 mtlR; mannitol operon transcriptional activator
D LOCK900_0336 Transcriptional antiterminator of lichenan operon, BglG family K03491 licR; probable licABCH operon transcriptional regulator
C Others
D LOCK900_0225 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LOCK900_0227 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LOCK900_0383 Glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D LOCK900_0303 Beta-glucoside bgl operon antiterminator, BglG family K02531 lacT; transcriptional antiterminator
D LOCK900_0590 Beta-glucoside bgl operon antiterminator, BglG family K02531 lacT; transcriptional antiterminator
D LOCK900_1727 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism
D LOCK900_1621 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism
D LOCK900_1549 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D LOCK900_0347 Thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D LOCK900_2484 Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D LOCK900_0898 Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D LOCK900_1434 Uracil phosphoribosyltransferase/Pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D LOCK900_1697 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D LOCK900_1246 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0