+E Transcription factors KO #

  Transcription Factors - Lacticaseibacillus rhamnosus LOCK900

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D LOCK900_2615 LysR family transcriptional regulator YeiE K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D LOCK900_2667 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D LOCK900_0612 Lactose phosphotransferase system repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor D LOCK900_0411 Transcriptional regulator of sugar metabolism K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor D LOCK900_1331 Transcriptional repressor of the fructose operon, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D LOCK900_0243 Transcriptional repressor of the myo-inositol catabolic operon DeoR family K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D LOCK900_0274 Transcriptional regulator, DeoR family K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D LOCK900_2314 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family D LOCK900_0353 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LOCK900_0403 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LOCK900_0597 Galactose operon repressor, GalR-LacI family of transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LOCK900_0738 Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D LOCK900_2701 Transcriptional repressor of the arabinose operon K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D LOCK900_0549 Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D LOCK900_1802 Transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D LOCK900_0313 Transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D LOCK900_2742 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator D LOCK900_2208 Transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D LOCK900_0108 Transcriptional regulator, TetR family K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D LOCK900_1879 Transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D LOCK900_0063 Transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon D LOCK900_0077 Transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon C Lrp/AsnC family C LuxR family C MarR family D LOCK900_0368 Transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D LOCK900_2076 Transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D LOCK900_2660 regulatory protein, MarR K18909 mepR; MarR family transcriptional regulator, repressor for mepA D LOCK900_0895 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D LOCK900_1642 Transcriptional regulator, repressor of the glutamine synthetase, MerR family K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor C Fur family D LOCK900_1964 Zinc uptake regulation protein ZUR K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D LOCK900_0793 Peroxide stress regulator PerR, FUR family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D LOCK900_0076 Transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D LOCK900_2396 putative transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family C PadR family D LOCK900_1874 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D LOCK900_2345 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D LOCK900_0651 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator C Other families D LOCK900_0703 Mn-dependent transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D LOCK900_0741 Biotin-protein ligase/Biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D LOCK900_1221 putative transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D LOCK900_2628 Transcriptional regulator, Xre family K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor D LOCK900_2299 Positive transcriptional regulator MutR family K20375 ropB; HTH-type transcriptional regulator, pheromone-responsive regulator D LOCK900_2560 PurR: transcription regulator associated with purine metabolism K09685 purR; HTH-type transcriptional regulator, purine operon repressor D LOCK900_2324 Sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator D LOCK900_1228 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) K01926 rex; redox-sensing transcriptional repressor D LOCK900_2209 Redox-sensitive transcriptional regulator K01926 rex; redox-sensing transcriptional repressor D LOCK900_0917 putative transcriptional regulator K07729 K07729; putative transcriptional regulator D LOCK900_2579 Transcriptional regulator, PbsX family K07729 K07729; putative transcriptional regulator D LOCK900_1904 Transcriptional regulator, PBSX family K07729 K07729; putative transcriptional regulator D LOCK900_1058 Hypothetical protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family D LOCK900_2153 Beta-glucoside bgl operon antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator D LOCK900_2873 Beta-glucoside bgl operon antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator D LOCK900_2881 Mannitol operon activator, BglG family K03483 mtlR; mannitol operon transcriptional activator D LOCK900_0372 Transcriptional antiterminator and PTS system component IIA K03483 mtlR; mannitol operon transcriptional activator D LOCK900_0336 Transcriptional antiterminator of lichenan operon, BglG family K03491 licR; probable licABCH operon transcriptional regulator C Others D LOCK900_0225 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LOCK900_0227 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LOCK900_0383 Glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D LOCK900_0303 Beta-glucoside bgl operon antiterminator, BglG family K02531 lacT; transcriptional antiterminator D LOCK900_0590 Beta-glucoside bgl operon antiterminator, BglG family K02531 lacT; transcriptional antiterminator D LOCK900_1727 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D LOCK900_1621 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D LOCK900_1549 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D LOCK900_0347 Thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D LOCK900_2484 Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D LOCK900_0898 Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D LOCK900_1434 Uracil phosphoribosyltransferase/Pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D LOCK900_1697 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D LOCK900_1246 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0